EH406135
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 9.947e-24 Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 2 Query: 2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169 TARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL Sbjct: 14 TARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQDL 69
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.216e-21 Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 2 Query: 2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169 TARRKDAR+VKIK+++D+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSVQDL Sbjct: 14 TARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL 69
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=2 SV=3) HSP 1 Score: 91.6633 bits (226), Expect = 1.643e-18 Identity = 43/56 (76.79%), Postives = 52/56 (92.86%), Query Frame = 2 Query: 2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169 TARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+DL Sbjct: 14 TARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDL 69
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.643e-18 Identity = 43/56 (76.79%), Postives = 52/56 (92.86%), Query Frame = 2 Query: 2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169 TARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V++L Sbjct: 14 TARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKEL 69
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 4.782e-18 Identity = 42/56 (75.00%), Postives = 52/56 (92.86%), Query Frame = 2 Query: 2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169 TARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L Sbjct: 14 TARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 4.782e-18 Identity = 42/56 (75.00%), Postives = 52/56 (92.86%), Query Frame = 2 Query: 2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169 TARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L Sbjct: 14 TARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4) HSP 1 Score: 90.1225 bits (222), Expect = 4.782e-18 Identity = 42/56 (75.00%), Postives = 52/56 (92.86%), Query Frame = 2 Query: 2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169 TARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L Sbjct: 14 TARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_MACFA (60S ribosomal protein L38 OS=Macaca fascicularis GN=RPL38 PE=3 SV=3) HSP 1 Score: 88.5817 bits (218), Expect = 1.391e-17 Identity = 41/55 (74.55%), Postives = 51/55 (92.73%), Query Frame = 2 Query: 2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQD 166 TARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++ Sbjct: 14 TARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKE 68
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_LYSTE (60S ribosomal protein L38 OS=Lysiphlebus testaceipes GN=RpL38 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.624e-16 Identity = 39/56 (69.64%), Postives = 50/56 (89.29%), Query Frame = 2 Query: 2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169 TARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++ Sbjct: 14 TARRKDAKSVKIKKNAENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_IXOSC (60S ribosomal protein L38 OS=Ixodes scapularis GN=RpL38 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 3.427e-16 Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 2 Query: 2 TARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169 TARRKDA+SVKIK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSLPPGL V++L Sbjct: 14 TARRKDAKSVKIKKNPDNVTKFKVRCSKYLYTIVVTEKEKAEKLKQSLPPGLQVKEL 70 The following BLAST results are available for this feature:
BLAST of EH406135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
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Sequences
The
following sequences are available for this feature:
EST sequence >EH406135 ID=EH406135; Name=EH406135; organism=Citrus clementina; type=EST; length=462bpback to top |