EH406181

Overview
NameEH406181
Unique NameEH406181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13823 contig Ccv1_Contig13823:1436..1796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EH406181 vs. ExPASy Swiss-Prot
Match: SC61A_DICDI (Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.160e-11
Identity = 35/44 (79.55%), Postives = 37/44 (84.09%), Query Frame = 3 
Query:    3 ALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 134
            ALTV+ADFMGAIGSGTGILLAVTIIYQYFETF KE+    G  G
Sbjct:  429 ALTVVADFMGAIGSGTGILLAVTIIYQYFETFVKEQQELSGGIG 472
[Close]
BLAST of EH406181 vs. ExPASy Swiss-Prot
Match: S61A1_RAT (Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus norvegicus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.410e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:    3 ALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 134
            AL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  430 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of EH406181 vs. ExPASy Swiss-Prot
Match: S61A1_PONAB (Protein transport protein Sec61 subunit alpha isoform 1 OS=Pongo abelii GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.410e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:    3 ALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 134
            AL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  430 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of EH406181 vs. ExPASy Swiss-Prot
Match: S61A1_MOUSE (Protein transport protein Sec61 subunit alpha isoform 1 OS=Mus musculus GN=Sec61a1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.410e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:    3 ALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 134
            AL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  430 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of EH406181 vs. ExPASy Swiss-Prot
Match: S61A1_HUMAN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Homo sapiens GN=SEC61A1 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.410e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:    3 ALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 134
            AL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  430 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of EH406181 vs. ExPASy Swiss-Prot
Match: S61A1_CANFA (Protein transport protein Sec61 subunit alpha isoform 1 OS=Canis familiaris GN=SEC61A1 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.410e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:    3 ALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 134
            AL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  430 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of EH406181 vs. ExPASy Swiss-Prot
Match: S61A1_BOVIN (Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos taurus GN=SEC61A1 PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.410e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:    3 ALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 134
            AL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  430 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of EH406181 vs. ExPASy Swiss-Prot
Match: S61A2_PONAB (Protein transport protein Sec61 subunit alpha isoform 2 OS=Pongo abelii GN=SEC61A2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.759e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:    3 ALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 134
            AL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+A E+G  G
Sbjct:  430 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQA-EVGGMG 472
[Close]
BLAST of EH406181 vs. ExPASy Swiss-Prot
Match: S61A2_MOUSE (Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.759e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:    3 ALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 134
            AL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+A E+G  G
Sbjct:  430 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQA-EVGGMG 472
[Close]
BLAST of EH406181 vs. ExPASy Swiss-Prot
Match: S61A2_HUMAN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.759e-11
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = 3 
Query:    3 ALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 134
            AL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+A E+G  G
Sbjct:  430 ALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQA-EVGGMG 472
The following BLAST results are available for this feature:
BLAST of EH406181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
SC61A_DICDI1.160e-1179.55Protein transport protein Sec61 subunit alpha OS=D... [more]
S61A1_RAT4.410e-1179.55Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_PONAB4.410e-1179.55Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_MOUSE4.410e-1179.55Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_HUMAN4.410e-1179.55Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_CANFA4.410e-1179.55Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_BOVIN4.410e-1179.55Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_PONAB5.759e-1179.55Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_MOUSE5.759e-1179.55Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_HUMAN5.759e-1179.55Protein transport protein Sec61 subunit alpha isof... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BF10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406181 ID=EH406181; Name=EH406181; organism=Citrus clementina; type=EST; length=361bp
GTGCATTAACAGTCCTGGCTGATTTCATGGGAGCAATTGGGTCAGGAACT
GGGATATTGCTCGCAGTTACGATCATATATCAGTACTTTGAGACGTTTGA
GAAGGAGAGAGCTAGTGAACTTGGCTTCTTTGGCTTTTAATACACCAATG
ATCTTGAGTTTCAGATTAGTTGGTGAGTAGTATTGTGCAATATTGTTGCA
GAATTCAAAGACTTAACATAGGCCATACCTTGTTAACACCTATGAATAGA
GATTCAGATCAGTCTGTAGTTTGGCCAATGCTTAGCCGCCTTTCTTTTTT
CTTTTGAAAGTTTCTGTACGTTCAACACGCCAAGGAAGATAGAAAGAATT
TCTGTTGAAAA
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