FC868663
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_ARATH (U1 small nuclear ribonucleoprotein 70 kDa OS=Arabidopsis thaliana GN=RNU1 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.717e-26 Identity = 65/105 (61.90%), Postives = 75/105 (71.43%), Query Frame = 1 Query: 79 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEP-RIREDR 390 ++V LVTD+ TNKP+GYAFIEYMHTRDMKAAYKQADG+K+DGRRVLVDVERGRTVPNWRPR + G EQ+P S+S EP R RE+R Sbjct: 165 KRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVDVERGRTVPNWRPR---RLGGGLGTSRVGGGEEIVG-EQQPQGRTSQSEEPSRPREER 265
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_XENTR (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus tropicalis GN=snrnp70 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21 Identity = 52/104 (50.00%), Postives = 65/104 (62.50%), Query Frame = 1 Query: 79 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEPRIREDR 390 +++ +V +K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPR N R+SGR+ + SR R + DR Sbjct: 130 KRIHMVYNKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRD-DTSRYDERDRDRERERDR 232
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_MOUSE (U1 small nuclear ribonucleoprotein 70 kDa OS=Mus musculus GN=Snrnp70 PE=1 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 1.078e-20 Identity = 50/104 (48.08%), Postives = 60/104 (57.69%), Query Frame = 1 Query: 79 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEPRIREDR 390 +++ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPR N R+SGR+ P DR Sbjct: 130 KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDR 233
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_HUMAN (U1 small nuclear ribonucleoprotein 70 kDa OS=Homo sapiens GN=SNRNP70 PE=1 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 1.078e-20 Identity = 50/104 (48.08%), Postives = 60/104 (57.69%), Query Frame = 1 Query: 79 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEPRIREDR 390 +++ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPR N R+SGR+ P DR Sbjct: 130 KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDR 233
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_BOVIN (U1 small nuclear ribonucleoprotein 70 kDa OS=Bos taurus GN=SNRNP70 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.078e-20 Identity = 50/104 (48.08%), Postives = 60/104 (57.69%), Query Frame = 1 Query: 79 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEPRIREDR 390 +++ +V K + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPR N R+SGR+ P DR Sbjct: 130 KRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDR 233
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_DROME (U1 small nuclear ribonucleoprotein 70 kDa OS=Drosophila melanogaster GN=snRNP70K PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 5.349e-20 Identity = 52/104 (50.00%), Postives = 64/104 (61.54%), Query Frame = 1 Query: 79 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEPRIREDR 390 +K+ L+ D+E+ KP+GYAFIEY H RDM AAYK ADG+K+D +RVLVDVER RTV W PR N ++SGRE + R R R REDR Sbjct: 129 KKIVLIHDQESGKPKGYAFIEYEHERDMHAAYKHADGKKIDSKRVLVDVERARTVKGWLPRRLGGGLGGTRRGGNDVNIKHSGRE-DNERERERYRLEREREDR 231
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_XENLA (U1 small nuclear ribonucleoprotein 70 kDa OS=Xenopus laevis GN=snrnp70 PE=2 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 3.467e-19 Identity = 51/97 (52.58%), Postives = 57/97 (58.76%), Query Frame = 1 Query: 109 TNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGRE-----QEPSRGPSRSAEPRIRE 384 + KPRGYAFIEY H RDM +AYK ADG+K+DGRRVLVDVERGRTV WRPR N R+SGR+ E R R R RE Sbjct: 143 SGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERDRERERDRRERSRE 239
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_DICDI (U1 small nuclear ribonucleoprotein 70 kDa OS=Dictyostelium discoideum GN=snrnp70 PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17 Identity = 44/99 (44.44%), Postives = 58/99 (58.59%), Query Frame = 1 Query: 103 KETNKPR---GYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPRXXXXXXXXXXXXXXXXNQRYSGREQEPSRGPSRSAEPRIREDR 390 K++N P GYAFIE+ RDMKAAYKQADG K+D RR++VD+ERGR + NW+PR NQ +SGRE SR + E +++ Sbjct: 132 KDSNNPEKHTGYAFIEFERERDMKAAYKQADGMKIDDRRIVVDIERGRVIKNWKPRKFGGGLGNTRAGGVDVNQTFSGREMSESREKEKEREKEKEKEK 230
BLAST of FC868663 vs. ExPASy Swiss-Prot
Match: RU17_SCHPO (U1 small nuclear ribonucleoprotein 70 kDa homolog OS=Schizosaccharomyces pombe GN=usp101 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12 Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1 Query: 79 EKVRLVTDKETNKPRGYAFIEYMHTRDMKAAYKQADGRKLDGRRVLVDVERGRTVPNWRPR 261 E++R+V +K T K GYAF+ + RD+K AYK + G L+GRR++VDVERGRTV W PR Sbjct: 127 ERIRVVRNKVTGKSMGYAFVVFERERDLKVAYKASAGLMLNGRRIVVDVERGRTVKGWLPR 187 The following BLAST results are available for this feature:
BLAST of FC868663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868663 ID=FC868663; Name=FC868663; organism=Citrus clementina; type=EST; length=671bpback to top |