FC868669
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CAF1I_ARATH (Probable CCR4-associated factor 1 homolog 9 OS=Arabidopsis thaliana GN=CAF1-9 PE=2 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 2.056e-64 Identity = 121/166 (72.89%), Postives = 137/166 (82.53%), Query Frame = 2 Query: 170 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667 REVWA NLESEFELIS++ID YPFISMDTEFPG++++ D+ R P D Y +LK+NVDAL+LIQVG TLSD +GNLPDLG + FIWEFNFRDFD+A DAHAPDSIELLR QGIDFERN ++GV+S RFAELMMSSGLVCNE VSWVTFHSAYDFGY Sbjct: 20 REVWAENLESEFELISEIIDDYPFISMDTEFPGVIFKSDL--------RFTNPDDLYTLLKANVDALSLIQVGLTLSDVNGNLPDLGDDLHRGFIWEFNFRDFDVARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFGY 177
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CAF1K_ARATH (Probable CCR4-associated factor 1 homolog 11 OS=Arabidopsis thaliana GN=CAF1-11 PE=2 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 4.580e-64 Identity = 117/166 (70.48%), Postives = 137/166 (82.53%), Query Frame = 2 Query: 170 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667 R+VWA NLESEF+LI +++ YPFISMDTEFPG++Y+ D+D R+ P+ Y +LKSNVDAL+LIQVG TLSD+ GNLPDLG N ++IWEFNFRDFD+ D HAPDSIELLR GIDFERNR+EGV+S RFAELMMSSGL+CNESVSWVTFHSAYDFGY Sbjct: 15 RDVWAYNLESEFDLIRGIVEDYPFISMDTEFPGVIYKADLD-----VLRRGNPNYLYNLLKSNVDALSLIQVGLTLSDADGNLPDLGGQKNRRYIWEFNFRDFDVERDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGY 175
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CAF1G_ARATH (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana GN=CAF1-7 PE=2 SV=2) HSP 1 Score: 189.504 bits (480), Expect = 1.339e-47 Identity = 95/167 (56.89%), Postives = 121/167 (72.46%), Query Frame = 2 Query: 170 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667 REVW NLESE LI +V+D +PF++MDTEFPG+V RP T + HY+ LK+NV+ L +IQ+G T SD GNLP G+ +NK+ IW+FNFR+FD+ +D +A DSIELLR GIDF +N + G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGY Sbjct: 13 REVWNDNLESEMALIREVVDDFPFVAMDTEFPGIVCRPVGTFKTNTEY-------HYETLKTNVNILKMIQLGLTFSDEKGNLPTCGT--DNKYCIWQFNFREFDLESDIYATDSIELLRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGY 170
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CAF1J_ARATH (Probable CCR4-associated factor 1 homolog 10 OS=Arabidopsis thaliana GN=CAF1-10 PE=2 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 5.264e-44 Identity = 91/167 (54.49%), Postives = 120/167 (71.86%), Query Frame = 2 Query: 170 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKF-IWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667 REVW NL EF LI +++D++ +I+MDTEFPG+V +P +T Y +Y+ LK NVD L LIQVG T SD +GNLP G+ +KF IW+FNFR+F+I D +A +SIELLR GIDF++N ++G+D VRF ELMMSSG+V N+++SWVTFH YDFGY Sbjct: 13 REVWDYNLVEEFALIREIVDKFSYIAMDTEFPGVVLKP---VATFKYNNDL----NYRTLKENVDLLKLIQVGLTFSDENGNLPTCGT---DKFCIWQFNFREFNIGEDIYASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGY 169
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CAF1F_ARATH (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana GN=CAF1-6 PE=2 SV=1) HSP 1 Score: 176.022 bits (445), Expect = 1.532e-43 Identity = 88/167 (52.69%), Postives = 115/167 (68.86%), Query Frame = 2 Query: 170 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667 REVW NL+ E +LI V+D +P+++MDTEFPG+V RP S Y HY+ LK+NV+ L +IQ+G T S+ GNLP G+ + IW+FNFR+FD+ +D A DSIELL+ GID +N +G+DS RFAEL+MSSG+V NE+V WVTFHS YDFGY Sbjct: 13 REVWNDNLQEEMDLIRDVVDDFPYVAMDTEFPGIVVRPVGTFKSNADY--------HYETLKTNVNILKMIQLGLTFSNEQGNLPTCGT--DKYCIWQFNFREFDLDSDIFALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGY 169
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CAF1B_ARATH (Probable CCR4-associated factor 1 homolog 2 OS=Arabidopsis thaliana GN=CAF1-2 PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 9.928e-43 Identity = 88/167 (52.69%), Postives = 115/167 (68.86%), Query Frame = 2 Query: 170 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667 REVW NLE E LI Q ID +P+++MDTEFPG+V + +P+ PY + + Y LK+NV+ L LIQ+G TLSD GNLP G+ N + IW+FNFR+F++ +D A DSIELLR ID E+N + GVD+ RFAEL+M SG+V N+ + WVTFH YDFGY Sbjct: 17 REVWNHNLEQEMALIEQSIDDFPYVAMDTEFPGIVCKTVTANPNPNPYSIHYEYN--YDTLKANVNMLKLIQLGLTLSDEKGNLPTCGT--NKQCIWQFNFREFNVISDMFALDSIELLRKSAIDLEKNNECGVDAKRFAELLMGSGVVLNDKIHWVTFHCGYDFGY 179
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CAF1_SCHPO (Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe GN=caf1 PE=1 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 3.654e-37 Identity = 79/167 (47.31%), Postives = 110/167 (65.87%), Query Frame = 2 Query: 170 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRP-DVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667 R+VW++NL+ E LI +I+RYP +SMDTEFPG+V RP V S+ Y HY+ L++NVD+L +IQ+G LSD GN P W+FNF F++ D +AP+SIELL GIDF+++++ G++ FAEL++ SGLV E V+W+TFHS YDF Y Sbjct: 23 RDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDY--------HYQTLRANVDSLKIIQIGLALSDEEGNAPV------EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAY 174
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.314e-33 Identity = 73/166 (43.98%), Postives = 109/166 (65.66%), Query Frame = 2 Query: 173 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667 EVWASNLE E I +++ Y +I+MDTEFPG+V RP R D+ Y++L+ NVD L +IQ+G T ++ G P SG N W+FNF+ F++ D ++ DSI+LL G+ F+++ +EG+D++ FAEL+M+SG+V ++V W++FHS YDFGY Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGY 164
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.314e-33 Identity = 73/166 (43.98%), Postives = 109/166 (65.66%), Query Frame = 2 Query: 173 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667 EVWASNLE E I +++ Y +I+MDTEFPG+V RP R D+ Y++L+ NVD L +IQ+G T ++ G P SG N W+FNF+ F++ D ++ DSI+LL G+ F+++ +EG+D++ FAEL+M+SG+V ++V W++FHS YDFGY Sbjct: 14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGY 164
BLAST of FC868669 vs. ExPASy Swiss-Prot
Match: CNOT7_MOUSE (CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 1.589e-32 Identity = 74/166 (44.58%), Postives = 106/166 (63.86%), Query Frame = 2 Query: 173 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGPTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDIATDAHAPDSIELLRLQGIDFERNRKEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGY 667 EVWA NL+ E + I QVI +Y +++MDTEFPG+V RP R +D+ Y++L+ NVD L +IQ+G T + G P S W+FNF+ F++ D +A DSIELL GI F+++ +EG+++ FAEL+M+SG+V E V W++FHS YDFGY Sbjct: 14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGY 164 The following BLAST results are available for this feature:
BLAST of FC868669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868669 ID=FC868669; Name=FC868669; organism=Citrus clementina; type=EST; length=667bpback to top |