FC868705

Overview
NameFC868705
Unique NameFC868705
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10289 contig Ccv1_Contig10289:307..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868705 vs. ExPASy Swiss-Prot
Match: BPS1_ARATH (Protein BPS1, chloroplastic OS=Arabidopsis thaliana GN=BPS1 PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.077e-67
Identity = 106/160 (66.25%), Postives = 137/160 (85.62%), Query Frame = 3
Query:    3 IKDLITDLELPVSDWDEKWIDVYLDISVNLLDICIAFSPVLTKVSQGHLLLQCVLHTLDSSSPTQFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAFL 482
            IK LITDLELPVSDW++KW+DVYLDISV LLD+C AFS  LT+++QGHLLLQ  LH L+++SP    +A SSLD+W++HI SKNPR+E+CR+IL +LV +L+LPKVKNSAKGKVLMRA+YGVKV T+++  +FAAAFSGS++NL+ L VS+ LPWA +F+
Sbjct:   78 IKTLITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSPQNLSKAQSSLDSWKQHIVSKNPRIENCRAILSSLVQTLNLPKVKNSAKGKVLMRALYGVKVKTLYISGVFAAAFSGSSQNLMYLTVSNELPWAQSFM 237          

HSP 2 Score: 51.6026 bits (122), Expect = 1.077e-67
Identity = 30/74 (40.54%), Postives = 43/74 (58.11%), Query Frame = 2
Query:  473 SISALQANVNAEVRNILSSGRATVLNELEAVDGSVKKLYEVI-QNEVDTVEEELLQKSVLDLGKRAEYLSQGLD 691
            S   +Q  +NAE++NI  S   TVL ELEAV   VKKLY  I Q  +D +  + L+ SV +L    + +S+ +D
Sbjct:  235 SFMEVQNTMNAEIKNIFLSDGLTVLKELEAVASGVKKLYPAIQQGSIDPISLQPLKDSVTELSNGIDLVSKEVD 308          
BLAST of FC868705 vs. ExPASy Swiss-Prot
Match: U496D_ORYSI (UPF0496 protein 4 OS=Oryza sativa subsp. indica GN=OsI_033149 PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.865e-43
Identity = 91/163 (55.83%), Postives = 112/163 (68.71%), Query Frame = 3
Query:    3 IKDLITDLELPVSDWDEKWIDVYLDISVNLLDICIAFSPVLTKVSQGHLLLQCVLHTLDSSSPT----QFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAF 479
            I +LITDLELPVSDWD+KW+D+YL+ SV LLDICIA S  L+++ QG LLLQ  LH L S S      Q  RA  SL  W E +  + PR+ SC + L  L  +L L KVKNS KGKVLMRA+YG++ +TVFVCSIF A  SGS K L+EL+V +   W+ AF
Sbjct:   78 IANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCPRLVSCSATLQELAGNLSLMKVKNSVKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPLVELHVPEKFGWSQAF 240          
BLAST of FC868705 vs. ExPASy Swiss-Prot
Match: U496D_ORYSJ (UPF0496 protein 4 OS=Oryza sativa subsp. japonica GN=Os10g0513300 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.416e-42
Identity = 91/163 (55.83%), Postives = 112/163 (68.71%), Query Frame = 3
Query:    3 IKDLITDLELPVSDWDEKWIDVYLDISVNLLDICIAFSPVLTKVSQGHLLLQCVLHTLDSSSPT----QFGRACSSLDNWREHISSKNPRVESCRSILDNLVASLDLPKVKNSAKGKVLMRAMYGVKVLTVFVCSIFAAAFSGSAKNLLELNVSDTLPWAPAF 479
            I +LITDLELPVSDWD+KW+D+YL+ SV LLDICIA S  L+++ QG LLLQ  LH L S S      Q  RA  SL  W E +  +  R+ SC + L  L  +L L KVKNSAKGKVLMRA+YG++ +TVFVCSIF A  SGS K L+EL+V +   W+ AF
Sbjct:   78 IANLITDLELPVSDWDDKWVDIYLNSSVKLLDICIALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLREWMELVGVRCARLVSCSATLQELAGNLSLMKVKNSAKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPLVELHVPEKFGWSQAF 240          
The following BLAST results are available for this feature:
BLAST of FC868705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
BPS1_ARATH1.077e-6766.25Protein BPS1, chloroplastic OS=Arabidopsis thalian... [more]
U496D_ORYSI4.865e-4355.83UPF0496 protein 4 OS=Oryza sativa subsp. indica GN... [more]
U496D_ORYSJ1.416e-4255.83UPF0496 protein 4 OS=Oryza sativa subsp. japonica ... [more]
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Properties
Property NameValue
Genbank descriptionC31003G04EF AbioticL1 Citrus clementina cDNA clone C31003G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868705 ID=FC868705; Name=FC868705; organism=Citrus clementina; type=EST; length=698bp
TCATAAAAGACCTTATAACTGACTTGGAGCTTCCTGTAAGTGACTGGGAT
GAGAAATGGATAGACGTGTACTTAGACATCAGTGTAAACTTGCTTGATAT
ATGCATTGCTTTTAGCCCTGTTCTCACGAAGGTCAGCCAAGGCCACCTAT
TGCTTCAGTGTGTCTTGCACACTTTGGATTCTTCCTCTCCAACACAGTTT
GGGCGAGCCTGTTCTTCTCTTGATAACTGGAGGGAGCACATTAGTTCAAA
GAACCCCAGAGTTGAGAGCTGTCGTTCAATCTTAGACAATCTGGTAGCTT
CTTTGGATTTGCCCAAGGTTAAGAACTCAGCCAAAGGGAAGGTTTTGATG
CGCGCAATGTATGGGGTTAAGGTGTTGACTGTATTTGTTTGTAGTATTTT
TGCTGCAGCCTTCTCTGGATCAGCCAAGAATTTGTTAGAACTGAACGTTT
CTGACACATTACCTTGGGCACCAGCATTTCTGCCTTGCAAGCTAATGTGA
ATGCAGAAGTTAGGAACATATTATCCTCTGGAAGAGCTACAGTTTTGAAC
GAACTAGAGGCTGTTGATGGGAGCGTTAAGAAATTGTATGAGGTGATTCA
AAATGAGGTTGACACTGTTGAAGAGGAACTGCTCCAGAAATCTGTTTTGG
ATTTGGGAAAGAGGGCAGAATACCTTTCTCAAGGGCTAGATCATCTTA
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