FC868803
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868803 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 6.480e-32 Identity = 93/191 (48.69%), Postives = 108/191 (56.54%), Query Frame = 3 Query: 81 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGEPW*FVDEPDEPTGLGGAVIPQAK 647 MAQ MLLM GVST++ +LKR++L+ Q Q ++PK S+L F+PL + + K KVED K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP GAIGALG+ FVDEP TGL AVIP K Sbjct: 1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--TTGLEKAVIPPGK 181 HSP 2 Score: 71.2478 bits (173), Expect = 5.703e-12 Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 3 Query: 384 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 521 K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP Sbjct: 200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEP 245
BLAST of FC868803 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 3.931e-29 Identity = 85/189 (44.97%), Postives = 95/189 (50.26%), Query Frame = 3 Query: 81 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGEPW*FVDEPDEPTGLGGAVIPQAK 647 MAQTMLL + ++SLV + L+PKP S L + F + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGAL + F+D+P PTGL AVIP K Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGK 182
BLAST of FC868803 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 3.931e-29 Identity = 88/192 (45.83%), Postives = 97/192 (50.52%), Query Frame = 3 Query: 81 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGEPW*FVDEPDEPTGLGGAVIPQAKA 650 MAQTMLL + ++SLV + L+PKP S L PL + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGALG+ FVD+P PTGL AVIP K+ Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPPGKS 185
BLAST of FC868803 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1) HSP 1 Score: 124.405 bits (311), Expect = 5.677e-28 Identity = 86/192 (44.79%), Postives = 96/192 (50.00%), Query Frame = 3 Query: 81 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGEPW*FVDEPDEPTGLGGAVIPQAKA 650 MAQTMLL + ++SLV + L+PKP S L PL + K KVED KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP GAIGALG+ F+D+P TGL AVIP K+ Sbjct: 1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPPGKS 185
BLAST of FC868803 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 1.551e-26 Identity = 68/106 (64.15%), Postives = 71/106 (66.98%), Query Frame = 3 Query: 330 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGEPW*FVDEPDEPTGLGGAVIPQAK 647 K KVED K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP GAIGALG+ FVD+P PTGL AVIP K Sbjct: 69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGK 172 HSP 2 Score: 21.9422 bits (45), Expect = 1.551e-26 Identity = 8/13 (61.54%), Postives = 13/13 (100.00%), Query Frame = 2 Query: 641 GKSLRSALGLRKE 679 GK++RSALGL+++ Sbjct: 171 GKNVRSALGLKEQ 183 HSP 3 Score: 68.1662 bits (165), Expect = 4.828e-11 Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 3 Query: 384 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 521 K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP Sbjct: 191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEP 236 The following BLAST results are available for this feature:
BLAST of FC868803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868803 ID=FC868803; Name=FC868803; organism=Citrus clementina; type=EST; length=692bpback to top |