FC868845

Overview
NameFC868845
Unique NameFC868845
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868845_ssr5 microsatellite FC868845_ssr5:5..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig13930 contig Ccv1_Contig13930:12..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH28_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.106e-87
Identity = 146/182 (80.22%), Postives = 168/182 (92.31%), Query Frame = 2
Query:  134 RNLPIVPFDEGYSHLFGHDNLVVHRDGKSVHLSLDE-TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWAT 676
            + LP++ FDEGY+ LFG  NL+VHRDGKSV L+LDE TGSGFVS+D+YLHGFFS+SIKLPADY+AGVV+AFY+SNGD++EKNHDEIDFEFLGNIRG+ WRIQTNIYGNGST +GREERYNLWFDP++DFHQYSILW+ S IIFY+D +PIRE KRTASMGGDFPAKPMSLY+TIWDGS WAT
Sbjct:   24 QKLPLIQFDEGYTQLFGDQNLIVHRDGKSVRLTLDERTGSGFVSNDIYLHGFFSSSIKLPADYSAGVVIAFYLSNGDLYEKNHDEIDFEFLGNIRGREWRIQTNIYGNGSTHLGREERYNLWFDPTEDFHQYSILWSLSHIIFYVDNVPIREVKRTASMGGDFPAKPMSLYSTIWDGSKWAT 205          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH27_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2)

HSP 1 Score: 313.153 bits (801), Expect = 8.764e-85
Identity = 145/182 (79.67%), Postives = 161/182 (88.46%), Query Frame = 2
Query:  134 RNLPIVPFDEGYSHLFGHDNLVVHRDGKSVHLSLDE-TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWAT 676
            +NLPI  F+E Y+ LFG  NL VH+DGKSV L+LDE TGSGFVS+D YLHGFFSASIKLP+DYTAGVVVAFYMSNGDM+EKNHDEIDFEFLGNIR K WR+QTNIYGNGST  GREERYNLWFDP++DFHQYSILW+DS IIF++D +PIRE KRTA MGG FP+KPMSLY TIWDGS WAT
Sbjct:   24 QNLPITSFEESYTQLFGDKNLFVHQDGKSVRLTLDERTGSGFVSNDYYLHGFFSASIKLPSDYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIREKEWRVQTNIYGNGSTHSGREERYNLWFDPTEDFHQYSILWSDSHIIFFVDNVPIREVKRTAEMGGHFPSKPMSLYTTIWDGSKWAT 205          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH30_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 6.742e-69
Identity = 123/183 (67.21%), Postives = 144/183 (78.69%), Query Frame = 2
Query:  131 YRNLPIVPFDEGYSHLFGHDNLVVHRDGKSVHLSLDE-TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWAT 676
            + NL  + F+E  S LFG  NLV   D  SV L LD  TGSGF+S ++Y HGF+S+ IKLPADYTAGVVVAFY SNGD+FEK HDE+D EFLGNI+GK WR QTN+YGNGST  GREERY LWFDPS +FH+YSILWT  +IIF++D +PIRE  R  +MG D+PAKPM+LYATIWD SDWAT
Sbjct:   24 FTNLNTLSFEESLSPLFGDANLVRSPDDLSVRLLLDRYTGSGFISSNMYQHGFYSSMIKLPADYTAGVVVAFYTSNGDVFEKTHDELDIEFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKIIFWVDDVPIREVIRNDAMGADYPAKPMALYATIWDASDWAT 206          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH29_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.370e-68
Identity = 119/181 (65.75%), Postives = 142/181 (78.45%), Query Frame = 2
Query:  137 NLPIVPFDEGYSHLFGHDNLVVHRDGKSVHLSLDE-TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWAT 676
            N+  + FDEG SHLFG  NL+   D +SV L LD+ TGSGF+S  +Y HGFFS+ IKLP  YTAG+VVAFY SNGD+F K+HDE+D EFLGN+ GK WR QTN+YGNGST+ GREERY LWFDPS +FH+YSILWT ++IIF++D +PIRE  R   M GD+P KPMSLYATIWD S WAT
Sbjct:   34 NINPIFFDEGLSHLFGEGNLIRSPDDRSVRLLLDKYTGSGFISSSMYQHGFFSSLIKLPGAYTAGIVVAFYTSNGDVFVKDHDELDIEFLGNLEGKPWRFQTNMYGNGSTNRGREERYRLWFDPSKEFHRYSILWTPTKIIFWVDDVPIREILRKEEMNGDYPQKPMSLYATIWDASSWAT 214          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH33_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 5.933e-49
Identity = 86/177 (48.59%), Postives = 121/177 (68.36%), Query Frame = 2
Query:  149 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDET-GSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWAT 676
            +  + G+S  FG  N+ V+  G    L+LD++ G+G VS + Y +GFFSA +KLPA + +GVVVAFY+SN + + K+HDEID E LG  R  +W IQTN+Y NGST  GREE++  WFDP+  FH Y+++W     +F +D IP+R+F    +    +P+KPMSLY T+WDGS+WAT
Sbjct:   41 IAIENGFSRRFGAHNIQVN--GSLAKLTLDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAYPSKPMSLYVTVWDGSEWAT 215          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH2_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 2 OS=Arabidopsis thaliana GN=XTH2 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.379e-42
Identity = 87/178 (48.88%), Postives = 114/178 (64.04%), Query Frame = 2
Query:  149 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLD-ETGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYM-SNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWAT 676
            + FD  Y   +G D+++    GK V LS+D  +GSGF S   Y  GFF   IKLP   +AGVV AFY+ S GD     HDE+DFEFLGN +GK   IQTN++ NG    GRE+++  WFDP+  FH Y ILW   QI+FY+D +PIR FK     G ++P+KPM L A++W+G +WAT
Sbjct:   30 IDFDVNYVVTWGQDHILKLNQGKEVQLSMDYSSGSGFESKSHYGSGFFQMRIKLPPRDSAGVVTAFYLTSKGD----THDEVDFEFLGNRQGKPIAIQTNVFSNGQG--GREQKFVPWFDPTTSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYPSKPMQLVASLWNGENWAT 201          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH1_ARATH (Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.025e-42
Identity = 85/177 (48.02%), Postives = 116/177 (65.54%), Query Frame = 2
Query:  149 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDET-GSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWAT 676
            V FD+ Y   +G +N++    GK V LSLD + GSGF S + Y  GFF   IK+P   T+GVV AFY+++       HDE+DFEFLGN  GK   +QTN++ NG  +  RE++  LWFDPS DFH Y+ILW   QI+ Y+D IP+R FK T S G ++P+KPM +  ++W+G +WAT
Sbjct:   37 VGFDDNYVVTWGQNNVLKLNQGKEVQLSLDHSSGSGFESKNHYESGFFQIRIKVPPKDTSGVVTAFYLTSKG---NTHDEVDFEFLGNKEGK-LAVQTNVFTNGKGN--REQKLALWFDPSKDFHTYAILWNPYQIVLYVDNIPVRVFKNTTSQGMNYPSKPMQVVVSLWNGENWAT 207          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH5_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 5 OS=Arabidopsis thaliana GN=XTH5 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.952e-40
Identity = 83/178 (46.63%), Postives = 115/178 (64.61%), Query Frame = 2
Query:  149 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDE-TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWAT 676
            VPF   Y   +  D++     G  VHL LD+ TG+GF S   YL G FS  IK+ A  +AG V AFY+S+ +     HDEIDFEFLGN  G+ + +QTN++  G+ +  RE+R NLWFDPS D+H YS+LW   QI+F++D +PIR FK +  +G  FP  +PM +Y+++W+  DWAT
Sbjct:   30 VPFGRNYFPTWAFDHIKYLNGGSEVHLVLDKYTGTGFQSKGSYLFGHFSMHIKMVAGDSAGTVTAFYLSSQN---SEHDEIDFEFLGNRTGQPYILQTNVFTGGAGN--REQRINLWFDPSKDYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWAT 202          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH31_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.913e-39
Identity = 84/183 (45.90%), Postives = 113/183 (61.75%), Query Frame = 2
Query:  140 LPIVPFDEGYSHLFGHDNLVVHRDGKSVHLSLDE-TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGS---TSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFPAKPMSLYATIWDGSDWAT 676
            +P  PFD  +  L+G  +    R+   V L LD+ TGSGF S   Y  G+F ASIKL   +TAGV  + Y+SN      +HDE+D EFLG   GK + +QTN++  GS     IGRE ++ LWFDP+ DFH Y+ILW  +QI+F++D +PIR + R       FP +PM +Y +IWD SDWAT
Sbjct:   34 VPTSPFDREFRTLWGSQHQ--RREQDVVTLWLDKSTGSGFKSLRPYRSGYFGASIKLQPGFTAGVDTSLYLSNNQEHPGDHDEVDIEFLGTTPGKPYSLQTNVFVRGSGDRNVIGREMKFTLWFDPTQDFHHYAILWNPNQIVFFVDDVPIRTYNRKNE--AIFPTRPMWVYGSIWDASDWAT 212          
BLAST of FC868845 vs. ExPASy Swiss-Prot
Match: XTH4_ARATH (Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.495e-39
Identity = 86/178 (48.31%), Postives = 110/178 (61.80%), Query Frame = 2
Query:  149 VPFDEGYSHLFGHDNLVVHRDGKSVHLSLDE-TGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMFEKNHDEIDFEFLGNIRGKNWRIQTNIYGNGSTSIGREERYNLWFDPSDDFHQYSILWTDSQIIFYIDGIPIREFKRTASMGGDFP-AKPMSLYATIWDGSDWAT 676
            VPF   Y   +  D+      G  + L LD+ TG+GF S   YL G FS  IKLPA  TAGVV AFY+S+ +     HDEIDFEFLGN  G+   +QTN++  G  +  RE+R  LWFDPS  +H YSILW   QI+F++D IPIR FK    +G  FP  +PM LY+++W+  DWAT
Sbjct:   33 VPFGRNYVPTWAFDHQKQFNGGSELQLILDKYTGTGFQSKGSYLFGHFSMHIKLPAGDTAGVVTAFYLSSTN---NEHDEIDFEFLGNRTGQPAILQTNVFTGGKGN--REQRIYLWFDPSKAYHTYSILWNMYQIVFFVDNIPIRTFKNAKDLGVRFPFNQPMKLYSSLWNADDWAT 205          
The following BLAST results are available for this feature:
BLAST of FC868845 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
XTH28_ARATH1.106e-8780.22Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH27_ARATH8.764e-8579.67Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH30_ARATH6.742e-6967.21Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH29_ARATH4.370e-6865.75Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH33_ARATH5.933e-4948.59Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH2_ARATH5.379e-4248.88Xyloglucan endotransglucosylase/hydrolase protein ... [more]
XTH1_ARATH7.025e-4248.02Putative xyloglucan endotransglucosylase/hydrolase... [more]
XTH5_ARATH2.952e-4046.63Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH31_ARATH1.913e-3945.90Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH4_ARATH9.495e-3948.31Xyloglucan endotransglucosylase/hydrolase protein ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31005E08EF AbioticL1 Citrus clementina cDNA clone C31005E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868845 ID=FC868845; Name=FC868845; organism=Citrus clementina; type=EST; length=698bp
GCACATATATATATAAACATACACTCACAGAGACAGAGCAAAAACAGAGA
GAGAAGAAAAGATGGTGGTGTCTTATGAGGGTTGTTTTCTTCTAGTATTT
TCTCTTCTTGCTGTGGTTGCTTCTGGGTTGTACAGAAACCTGCCTATTGT
GCCTTTTGATGAAGGGTATAGTCATTTGTTTGGGCATGATAATCTTGTTG
TTCATAGAGATGGAAAATCTGTTCATTTATCTCTAGATGAAACAGGGTCT
GGATTTGTGTCACATGACCTCTATCTTCATGGTTTCTTCAGTGCTTCAAT
AAAGTTGCCTGCTGATTATACTGCCGGCGTTGTTGTTGCCTTCTATATGT
CAAATGGTGACATGTTTGAGAAGAATCATGATGAAATAGACTTTGAGTTC
TTGGGTAATATTAGAGGCAAAAATTGGAGGATTCAGACTAATATTTATGG
CAATGGAAGCACCAGCATTGGAAGAGAAGAGAGATACAATCTCTGGTTTG
ATCCTTCTGATGATTTCCATCAGTACAGTATTCTCTGGACTGATTCCCAG
ATCATATTTTATATAGACGGTATTCCAATTAGGGAGTTTAAGAGAACTGC
ATCTATGGGAGGAGATTTTCCTGCTAAGCCGATGTCTTTGTACGCCACAA
TCTGGGATGGCTCTGATTGGGCTACAATGGTGGNCAATACCGAGTGAA
back to top