FC868986
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_CHLRE (Ribosome biogenesis protein WDR12 homolog OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_128420 PE=3 SV=2) HSP 1 Score: 137.502 bits (345), Expect = 7.225e-32 Identity = 77/189 (40.74%), Postives = 114/189 (60.32%), Query Frame = 1 Query: 148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSN-----------PGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNII-KSDGLKYVTVATGFKDQTLRLWKVDAEE 678 +V V+F TKL +VP +A+PS+L R+GLS ++N+LL A++P PFDFL++GELVR SLEQ LLA +SAE LE+EY+ AV P +++ + HDDWVS+VDGS G +++G YD L R+W + H G V+ V + KS G + T KD+ +++W++ + E Sbjct: 6 QVLVKFVTKLPAHLRVPETPVAVPSDLKRYGLSQIINHLL-ALDPP---RPFDFLIDGELVRKSLEQHLLAHNLSAESTLEVEYVPAVVPPQQKNSTPHDDWVSSVDGSRCAPASSSGGSPSGVVVSGSYDGLLRLWNGDLEAVASVSAHAGGVNCVRFLPKSQG---DLLLTSGKDRLVKMWQLSSSE 187
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_DICDI (Ribosome biogenesis protein WDR12 homolog OS=Dictyostelium discoideum GN=wdr12 PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 8.266e-28 Identity = 67/191 (35.08%), Postives = 106/191 (55.50%), Query Frame = 1 Query: 121 EDQNEENSRRVQVRFKTKLK-----PPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEE 678 E +N+ N+++V+ K K+K +V IA+P L R GLS V+++L + N S+PFDFL+NG+ +R +L++ + +S E+++ IEY++A+ K E+ HDDWVS VDGSN G +++G YD RVW G GH V SV I ++ + D+TLR+W + + Sbjct: 2 ESENKNNNKKVKEESKVKVKFITNDANIRVTDTPIAVPVRLGRLGLSEVIHHLREEENET--SKPFDFLINGKFIRTTLDKHIKNANLSEEQIITIEYLEAITEPKREKECQHDDWVSCVDGSNFGLVVSGSYDLGVRVWGYDGELISTGTGHLAGVKSVCWISDKNADNLSFVSASMDKTLRVWNFNKSQ 190
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_ASHGO (Ribosome biogenesis protein YTM1 OS=Ashbya gossypii GN=YTM1 PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.011e-25 Identity = 68/183 (37.16%), Postives = 105/183 (57.38%), Query Frame = 1 Query: 136 ENSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEEL 681 E+ +V+V+F T+ + + V + +P +L R+GLS ++N+LL P PFDFL++G+L+R SL+ +L KG+S+E VL +EY +AV P + ++DWVSA+D I++G YD + R W G GH GAV +V I S L +G D+TLRLWK +++ Sbjct: 3 EDKSQVKVKFFTRSRTSRLHVLDAPLLLPVSLKRYGLSEIINHLLGLAEPV----PFDFLIDGQLLRCSLQDYLTRKGLSSEAVLNVEYTRAVLPPSYLKSFSNEDWVSALD-VGAERIVSGSYDGVVRTWNLSGKIEKQYSGHTGAVRAVKFISSTRL-----VSGGNDRTLRLWKTKNDDV 175
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_XENTR (Ribosome biogenesis protein wdr12 OS=Xenopus tropicalis GN=wdr12 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.320e-25 Identity = 65/176 (36.93%), Postives = 101/176 (57.39%), Query Frame = 1 Query: 148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAE 675 ++Q RF T+ + KV +IP+ LS+++N LL+ N + K FDFLV + +RM L + + A+GIS E V+EIEY++ + + EE +HDDWVS++ G+ +ILTG YD R+W G + GH AV V +K D L + ++ DQT++LW+ + E Sbjct: 3 QIQARFFTE-EEKYKVDDVPFSIPATSEIVDLSNLINKLLETKNGDHKPVEFDFLVKSQFLRMPLIKHMEAEGISTEVVVEIEYVEKITAPQPEECMMHDDWVSSIAGTEE-WILTGSYDKTCRIWSLEGKTIMTITGHTEAVKDVTWVKKDSLSCLLLSASI-DQTIQLWEWNTE 175
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: WDR12_DANRE (Ribosome biogenesis protein wdr12 OS=Danio rerio GN=wdr12 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.251e-25 Identity = 67/176 (38.07%), Postives = 100/176 (56.82%), Query Frame = 1 Query: 148 RVQVRFKTKLKPPQKVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAE 675 ++Q RF T+ K V +IP++ LS V+N LL+A N K FDFLV G+ +R SL++ + + IS E+V+EIEY++ + EE +HDDW+S+V+ + +ILTG YD R+W G + GH V V +K DGL V + T DQT+ LW+ ++E Sbjct: 3 QLQARFFTENKK-YLVDDVPFSIPASSEVADLSGVINKLLEAKNAGHKHVEFDFLVRGQFLRTSLDKHIETENISTEEVVEIEYVEKFTAPQPEECIMHDDWISSVEADSE-WILTGSYDKTARIWSMEGKAVMTVAGHADVVKDVAWVKRDGLNSV-LLTASLDQTVMLWEWNSE 175
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_YEAST (Ribosome biogenesis protein YTM1 OS=Saccharomyces cerevisiae GN=YTM1 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.906e-24 Identity = 68/184 (36.96%), Postives = 101/184 (54.89%), Query Frame = 1 Query: 136 ENSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD-GSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEEL 681 E+ +V++RF T+ K V + P +L R+GLS +VN+LL + P PFDFL+ GEL+R SL +L KG+S+E L +EY +A+ P ++DWVS++D G I++G YD + R W G GH G + +V I + L V+ G D+TLRLWK ++L Sbjct: 3 EDKSQVKIRFFTREKDELLHVQDTPMYAPISLKRYGLSEIVNHLLGSEKPV----PFDFLIEGELLRTSLHDYLTKKGLSSEASLNVEYTRAILPPSYLNSFSNEDWVSSLDVGDGSKHIISGSYDGIVRTWDLSGNVQKQYSGHSGPIRAVKYISNTRL----VSAG-NDRTLRLWKTKNDDL 177
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_YEAS7 (Ribosome biogenesis protein YTM1 OS=Saccharomyces cerevisiae (strain YJM789) GN=YTM1 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.906e-24 Identity = 68/184 (36.96%), Postives = 101/184 (54.89%), Query Frame = 1 Query: 136 ENSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD-GSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEEL 681 E+ +V++RF T+ K V + P +L R+GLS +VN+LL + P PFDFL+ GEL+R SL +L KG+S+E L +EY +A+ P ++DWVS++D G I++G YD + R W G GH G + +V I + L V+ G D+TLRLWK ++L Sbjct: 3 EDKSQVKIRFFTREKDELLHVQDTPMYAPISLKRYGLSEIVNHLLGSEKPV----PFDFLIEGELLRTSLHDYLTKKGLSSEASLNVEYTRAILPPSYLNSFSNEDWVSSLDVGDGSKHIISGSYDGIVRTWDLSGNVQKQYSGHSGPIRAVKYISNTRL----VSAG-NDRTLRLWKTKNDDL 177
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_KLULA (Ribosome biogenesis protein YTM1 OS=Kluyveromyces lactis GN=YTM1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24 Identity = 71/180 (39.44%), Postives = 106/180 (58.89%), Query Frame = 1 Query: 148 RVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVD-GSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEEL 681 +V++RF T+ + V I P +L R+GLS +VN+LL+ KS PFDFL++GEL+R SL+ +L+ KG+S+E L +EY +AV P ++DWVS++D GSN +I +G YD + R + G GH G + +V+ I S L V+ G D+TLRLWK ++L Sbjct: 7 QVKLRFFTREEDETLHVNDAPIYAPVSLKRYGLSEIVNHLLELP----KSMPFDFLIDGELLRTSLQDYLIKKGLSSETFLNVEYTRAVLPPSYLSSFDNEDWVSSLDVGSN--YIYSGSYDGIVRTYNLSGKVEKQYSGHSGPIRAVHYISSTRL----VSAG-NDRTLRLWKTKNDDL 175
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_CANGA (Ribosome biogenesis protein YTM1 OS=Candida glabrata GN=YTM1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 3.251e-24 Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = 1 Query: 139 NSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNP-GFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEE 678 ++ +V+V+F T+ K V + P +L R+GLS +VN+LL++ P PFDFL++GEL+R SL+++L KG+S+E L +EY +AV P +DDWVSA+D S+ I +G YD + R W G GH GAV +V I + + + D++LRLWK ++ Sbjct: 4 DTSQVKVKFFTREKDESLHVDDVPMYAPISLKRYGLSEIVNHLLESETPI----PFDFLIDGELLRTSLQEYLTKKGLSSETTLTVEYTRAVLPPSFLANFNNDDWVSALDVSDDFRHIYSGSYDGVVRTWNMSGKVEKQYSGHTGAVKAVKYISN-----TRIVSAGNDRSLRLWKTKNDD 176
BLAST of FC868986 vs. ExPASy Swiss-Prot
Match: YTM1_VANPO (Ribosome biogenesis protein YTM1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=YTM1 PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 4.245e-24 Identity = 65/182 (35.71%), Postives = 101/182 (55.49%), Query Frame = 1 Query: 139 NSRRVQVRFKTKLKPPQ-KVPSNSIAIPSNLTRFGLSSVVNNLLQAVNPEWKSEPFDFLVNGELVRMSLEQFLLAKGISAEKVLEIEYIKAVAPQKEEEPSLHDDWVSAVDGSNPGFILTGCYDNLGRVWKAGGVCTHILEGHCGAVSSVNIIKSDGLKYVTVATGFKDQTLRLWKVDAEEL 681 +S +V++RF T+ + V + P +L R+GLS VVN+LL P PFDFL++GEL+R+SL+++L G+S+E L +EY +AV P ++DWVS++D + I++G YD + R W G GH + +V I + + +G D+TLRLWK E+L Sbjct: 4 DSSQVKLRFFTREQDESLHVQDAPMYAPISLKRYGLSEVVNHLLGFEKPV----PFDFLIDGELLRISLQEYLTKHGLSSETFLNVEYTRAVLPPSFLSSFSNEDWVSSLDVGDNNKIISGSYDGVVRTWNLSGKIEKQYSGHSAPIRAVKYISN-----TRMVSGGNDRTLRLWKTKNEDL 176 The following BLAST results are available for this feature:
BLAST of FC868986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868986 ID=FC868986; Name=FC868986; organism=Citrus clementina; type=EST; length=736bpback to top |