FC869074

Overview
NameFC869074
Unique NameFC869074
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13000 contig Ccv1_Contig13000:236..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC869074 vs. ExPASy Swiss-Prot
Match: SKI31_ARATH (F-box protein SKIP31 OS=Arabidopsis thaliana GN=SKIP31 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.510e-59
Identity = 103/147 (70.07%), Postives = 126/147 (85.71%), Query Frame = 3 
Query:  273 RIDTGIFSKIPPELFTHMLKFLSSEDLVSCSLVCRFRNYAASDESLWRRLYCMRWGLLPPTKNLRVCAWKKLYIQRDKEDLAELVRSCPTEFKEYYIQMQAAKRSQAPLPSQVKDDRIIIDKTVGDQVSLWKKQ*GLTDNVLTDHAC 713
            RI++G+F+ +P ELF H+LKFLSSEDLVSCSLVC+F N+AA+DESLWRRLYC+RWGL  P++ LR  AWKKLYI RD++D+ ELVR+CP++FKEYY+ MQAAKRSQAPLPSQ+ DDRII+D TV +QVSLWKK  GLTD  +T H C
Sbjct:   65 RIESGVFTNVPTELFRHILKFLSSEDLVSCSLVCKFLNFAAADESLWRRLYCIRWGLTLPSRKLRESAWKKLYIDRDEQDMIELVRTCPSDFKEYYVHMQAAKRSQAPLPSQMVDDRIILDNTVLEQVSLWKKSKGLTDKAVTGHIC 211
The following BLAST results are available for this feature:
BLAST of FC869074 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI31_ARATH6.510e-5970.07F-box protein SKIP31 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionC31008C04EF AbioticL1 Citrus clementina cDNA clone C31008C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869074 ID=FC869074; Name=FC869074; organism=Citrus clementina; type=EST; length=714bp
GGAAGCCAGATTCCGCTGCTCCTCTCGTCTCGACGATGACGTTATCCGAC
GACGAAGACGATAGCTTGGCTCAGTTCCTGGAATCCGAAGTCCTCGCTCA
AGTTTCAGATTCCGAGGAAGAGAAGCAATCCAAGGAAGAAGATGAACCGA
AAAAGAAGAAATTGTGCGTGGAGAAATTCTCAGCCACGGGCTCGTGCTCG
GGGTCGGGCTCGGATAGTATTAGTAACAATAATAATATTAATAATAAAAG
TGAGATTCATTCTAGTCCTAATAGAATTGATACTGGAATTTTCAGCAAGA
TTCCGCCTGAATTATTCACGCACATGCTCAAATTCCTGTCTTCTGAGGAT
CTTGTATCATGTTCGCTGGTTTGTAGATTCCGGAATTATGCTGCTTCTGA
TGAGTCCTTGTGGCGTCGCTTATACTGTATGCGATGGGGTCTGTTGCCCC
CAACCAAAAATTTACGAGTTTGTGCTTGGAAAAAGCTTTATATTCAGCGC
GACAAGGAAGACTTGGCCGAACTAGTTAGAAGTTGCCCAACTGAGTTTAA
AGAGTACTATATCCAGATGCAAGCTGCTAAGAGAAGCCAAGCACCACTTC
CTTCACAGGTGAAAGATGATCGGATCATTATTGACAAGACAGTTGGGGAT
CAAGTTTCTTTGTGGAAAAAGCAGTAGGGCTTGACTGATAACGTGCTCAC
TGACCATGCTTGTT
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