FC869144

Overview
NameFC869144
Unique NameFC869144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11304 contig Ccv1_Contig11304:15..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2E_ARATH (Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.290e-37
Identity = 82/148 (55.41%), Postives = 96/148 (64.86%), Query Frame = 3
Query:  252 MYRDR-------GGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGKSQLDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYYDY 674
            MY+DR       GGG+S+SEI+ G +DRKRINDALDKHL+K+SPSTSR  +SKDK+  SVPSTS  KSQL  R     S   ++                        WISWFCNLRGNEFFCEVD++YIQDDF LCG+S Q PYYDY
Sbjct:    1 MYKDRSGGGIMGGGGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRVFTSKDKD--SVPSTSTAKSQLHSRSPDVESDTDSE-----------GSDVSGSEGDDTSWISWFCNLRGNEFFCEVDEDYIQDDFNLCGLSGQVPYYDY 135          
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2D_ARATH (Casein kinase II subunit beta-3 OS=Arabidopsis thaliana GN=CKB3 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.877e-31
Identity = 75/147 (51.02%), Postives = 92/147 (62.59%), Query Frame = 3
Query:  252 MYRDR----GGGASKSEIVAGPLDRKRINDALDKHLEK--TSPSTSRALSSKDKERLSVPSTSAGKSQLDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYYDY 674
            MY++R    GGG+S+SEI+ G +DRKRINDAL+K LEK  TS +TSR  SSKDK+  S  ST   K+QL   +S + S   +                         WISWFCNLRGN+FFCEVD++YIQDDF LCG+S Q PYYDY
Sbjct:    1 MYKERSGGGGGGSSRSEILGGAIDRKRINDALNKKLEKSSTSTTTSRVFSSKDKDPFSFTST---KTQLPDVESETDSEGSD---------------VSGSEGDDTSWISWFCNLRGNDFFCEVDEDYIQDDFNLCGLSGQVPYYDY 129          
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2B_ARATH (Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.583e-30
Identity = 77/148 (52.03%), Postives = 91/148 (61.49%), Query Frame = 3
Query:  252 MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSA---GKSQ---LDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXXXX-WISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYYDY 674
            MYRDRG   S+ E+V    DRKRINDAL    E+ SPSTSR ++ K K  ++  +T+A   GK Q   ++HRDSRSASL KN                          WISWFCNLRGNEFFCEVDD+YIQDDF LCG+SS  PYY+Y
Sbjct:    1 MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQVNGKGKGTVTAATTTANLIGKQQSNNINHRDSRSASLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSLVPYYEY 140          
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2C_ARATH (Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.766e-24
Identity = 67/144 (46.53%), Postives = 77/144 (53.47%), Query Frame = 3
Query:  252 MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGKSQL-DHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXXXX--WISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYYDY 674
            MYR+RG   SKSE+V    DRKRIN+  D       PS S +     K +++  S   GK QL D   SRS S+ K                            WISWFCNLRGNEFFCEVDD+YIQDDF LCG+S Q PYYDY
Sbjct:    1 MYRERGMVGSKSEVV----DRKRINEIHDNR-----PSHSMSQPVNGKGKVTSTSVLMGKQQLHDKESSRSGSISKTNISDAVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSHQVPYYDY 135          
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2B_XENLA (Casein kinase II subunit beta OS=Xenopus laevis GN=csnk2b PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 3
Query:  555 WISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYY 668
            WISWFC LRGNEFFCEVD++YIQD F L G++ Q P+Y
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHY 46          
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2B_RAT (Casein kinase II subunit beta OS=Rattus norvegicus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 3
Query:  555 WISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYY 668
            WISWFC LRGNEFFCEVD++YIQD F L G++ Q P+Y
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHY 46          
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2B_RABIT (Casein kinase II subunit beta OS=Oryctolagus cuniculus GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 3
Query:  555 WISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYY 668
            WISWFC LRGNEFFCEVD++YIQD F L G++ Q P+Y
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHY 46          
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2B_PIG (Casein kinase II subunit beta OS=Sus scrofa GN=CSNK2B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 3
Query:  555 WISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYY 668
            WISWFC LRGNEFFCEVD++YIQD F L G++ Q P+Y
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHY 46          
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2B_MOUSE (Casein kinase II subunit beta OS=Mus musculus GN=Csnk2b PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 3
Query:  555 WISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYY 668
            WISWFC LRGNEFFCEVD++YIQD F L G++ Q P+Y
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHY 46          
BLAST of FC869144 vs. ExPASy Swiss-Prot
Match: CSK2B_HUMAN (Casein kinase II subunit beta OS=Homo sapiens GN=CSNK2B PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 3
Query:  555 WISWFCNLRGNEFFCEVDDEYIQDDFYLCGVSSQAPYY 668
            WISWFC LRGNEFFCEVD++YIQD F L G++ Q P+Y
Sbjct:    9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHY 46          
The following BLAST results are available for this feature:
BLAST of FC869144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CSK2E_ARATH8.290e-3755.41Putative casein kinase II subunit beta-4 OS=Arabid... [more]
CSK2D_ARATH8.877e-3151.02Casein kinase II subunit beta-3 OS=Arabidopsis tha... [more]
CSK2B_ARATH2.583e-3052.03Casein kinase II subunit beta OS=Arabidopsis thali... [more]
CSK2C_ARATH2.766e-2446.53Casein kinase II subunit beta' OS=Arabidopsis thal... [more]
CSK2B_XENLA2.056e-1171.05Casein kinase II subunit beta OS=Xenopus laevis GN... [more]
CSK2B_RAT2.056e-1171.05Casein kinase II subunit beta OS=Rattus norvegicus... [more]
CSK2B_RABIT2.056e-1171.05Casein kinase II subunit beta OS=Oryctolagus cunic... [more]
CSK2B_PIG2.056e-1171.05Casein kinase II subunit beta OS=Sus scrofa GN=CSN... [more]
CSK2B_MOUSE2.056e-1171.05Casein kinase II subunit beta OS=Mus musculus GN=C... [more]
CSK2B_HUMAN2.056e-1171.05Casein kinase II subunit beta OS=Homo sapiens GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC31009A04EF AbioticL1 Citrus clementina cDNA clone C31009A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC869144 ID=FC869144; Name=FC869144; organism=Citrus clementina; type=EST; length=674bp
AGAGACCTAAGATCCGCTCGTGTGTGTTTAGTTTTTACCTTGGTTTTCTC
CGTCTCTGAACTCAAATCAAATCTAGGGTTTCCCGTCTCCATCCCAAAAA
AAGTGTCCTTTAAAGTAAAAAGTCCTTAATCTACGTAATCCATATACAGG
TTTTTCTATGTGAAGTATCAAAGCTGGAATCTTTGGGAGTTTAGGGTTCT
GAAATTGGAAAAGGAAAAAAGAAAATAAAGTAAAAAAGAATTGGGGCAGC
TATGTATAGAGATCGAGGAGGAGGGGCGTCGAAGTCGGAGATAGTGGCAG
GACCGTTGGATCGAAAGCGCATAAACGATGCGCTGGACAAGCATTTAGAG
AAGACCTCCCCTTCTACTTCGAGGGCCTTGAGTTCTAAAGACAAGGAGAG
GTTGTCCGTACCTTCCACTTCTGCCGGTAAATCGCAGCTCGATCACCGCG
ATTCTCGCTCCGCCTCTCTCCCCAAGAACAAATGCTCTGATGAGGAATCT
GAAACAGACAGTGAAGAATCTGATGTTAGCGGTTCTGATGGAGATGACAC
ATCTTGGATCTCATGGTTTTGCAATTTGCGAGGAAATGAATTTTTCTGTG
AAGTTGATGATGAGTACATCCAGGATGATTTTTATCTTTGTGGAGTGAGC
AGTCAAGCTCCATACTATGATTAT
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