FC870545

Overview
NameFC870545
Unique NameFC870545
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length841
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9604 contig Ccv1_Contig9604:1..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1)

HSP 1 Score: 463.381 bits (1191), Expect = 7.136e-130
Identity = 215/262 (82.06%), Postives = 241/262 (91.98%), Query Frame = 2
Query:   56 KDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGEPWWRKFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRNDMKTMKWAFWITGSYGSHPDKYYDPHALP 841
            +DAVLLASQD  +WPVI+PLPSYGRGRD   GRY+SLIFGTNLTDV+ITGDNGTIDGQG  WW++F  G+LKYTRPYLIE+M+S +IQISNLTL+NSPSWNVHPVYS ++++QGITILAPV SPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWD+YGIAYGMPTKQL+IRRLTCISP+SAVIALGSEMSGGIQDVRAEDI AI+SESG+RIKT +GRGG+VKDIYVR   MKTMKWAFW+TG+YGSH D +YDP A P
Sbjct:  124 RDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFP 385          
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.303e-21
Identity = 62/181 (34.25%), Postives = 90/181 (49.72%), Query Frame = 2
Query:  290 IEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG-WDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKT-AVGRGGFVKDIYVRRNDMKTMKWAFWITGSYGSHPDKYYD 826
            + ++     Q+   T+ N+ SW +HP     +     TI+AP  SPNTDG NP+SC N  I       GDDC+AVK+G     G    +   + I  R   + P    + +GSEMSGG+ DV  ED   I ++ G+R+KT A   GG V +I +RR  +  ++ A      Y    D + D
Sbjct:   25 LHLVSCHKTQLLGFTIRNAASWTIHPQGCEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETRGITVRHCLMQPGHGGLVIGSEMSGGVHDVTVEDCDMIGTDRGLRLKTGARSGGGMVGNITMRRVLLDGVQTALSANAHYHCDADGHDD 205          
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.909e-19
Identity = 63/195 (32.31%), Postives = 101/195 (51.79%), Query Frame = 2
Query:  167 IFGTNLTDVVITGDNGTIDGQGEPWWRKFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGG----IQDVRAEDITAIDSESGVRIKTAVGRGGFVKDI 739
            I  T++  +VI GD G I+GQG  WW      E K +RP  ++     N+++S LT ++SP  ++H    + V +  + I AP +SPNTDGI+  + +N  I+DC I +GDDC+A+ SG           T  + I  + C       I++GS    G    +++V  ++     + +G RIKT  G  G+ + I
Sbjct:  107 ILFTDIEGLVIEGD-GEINGQGSSWW------EHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIHISGIDCGPGHG--ISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMI 281          
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.371e-18
Identity = 67/205 (32.68%), Postives = 99/205 (48.29%), Query Frame = 2
Query:  182 LTDVVITGDNGTIDGQGEPWWRKFRVGELKYT----------RPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMS-GGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRNDM 760
            LTD  + G  G IDGQG+ WW     G+ K            RP  I+I +S+++ +  LTL+NSP +++       V +QG+ I AP  SPNTDGI+  +     IE C I +GDDC+A+ +G           +  + I+ L C       I +LG + S   +  V       ID+++G+RIKT  G  G    I     +M
Sbjct:  145 LTDFNLMG-TGVIDGQGQQWW----AGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG-----------SSNITIKDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQGGSGLASYITYENVEM 333          
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.658e-17
Identity = 70/201 (34.83%), Postives = 95/201 (47.26%), Query Frame = 2
Query:  182 LTDVVITGDNGTIDGQGEPWWR------KFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMS-GGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRNDM 760
            LTD  + G  G IDGQG  WW         R       RP  I+I  S+++ +  LTL NSP +++       V +QGI I AP  SPNTDGI+  +     IE C I +GDDCVAV +G           +  + I+ LTC       I +LG   S   +  V  +    ID+++G+RIKT  G  G    I     +M
Sbjct:  146 LTDFNLMG-TGVIDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNITIKDLTCGPGHGMSIGSLGKGNSRSEVSFVHLDGAKFIDTQNGLRIKTWQGGSGLASHITYENVEM 334          
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.537e-15
Identity = 55/195 (28.21%), Postives = 93/195 (47.69%), Query Frame = 2
Query:  203 GDNGTIDGQGEPWWR---KFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMSGG-IQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRNDMKTMK 772
            GD G +DG GE WW+   K    +     P  +   +S+++ + NL + N+    +     S+V V  + + AP  SPNTDGI+  +  N R+ +  I +GDDC++++SG           ++ + I  +TC       I +LG + S   +  V  +      +++GVRIKT  G  G   +I  +   M  +K
Sbjct:  163 GDTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG-----------SQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVK 346          
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR1_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=peh PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.472e-15
Identity = 74/224 (33.04%), Postives = 105/224 (46.88%), Query Frame = 2
Query:  137 DTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGE--------PWW---RKFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSS--VIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRNDMKTM 769
            DT G    + I  T+ T+  I G  GTIDGQG          WW      +V +LK   P LI+I  S+N  + N++LINSP  N H V+S          TI  P T+ NTDGI+P S  N  I    I +GDD VA+K        AY   ++   I  L         +++GSE + G+ +V  +D+    + +G+RIK+     G V  +      MK +
Sbjct:  119 DTNGKGCDAFITATSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWDLAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAHSNISTGDDNVAIK--------AYKGRSETRNISILHNEFGTGHGMSIGSE-TMGVYNVTVDDLIMTGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNV 330          
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.962e-15
Identity = 65/205 (31.71%), Postives = 94/205 (45.85%), Query Frame = 2
Query:  182 LTDVVITGDNGTIDGQGEPWWRKFRVGELKYT----------RPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMS-GGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRNDM 760
            LT   + G  G IDGQG+ WW     G+ K+           RP  I+   S  + I  L L+NSP +++       V + GI+I AP  SPNTDGI+  +  N  ++   I +GDDCVA+ +G           +  ++I  L C       I +LG E S   +  V       ID+++G+RIKT  G  G    I     +M
Sbjct:  145 LTGFTLMG-KGVIDGQGKQWW----AGQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTG-----------SSNIVIEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTWQGGSGMASHIIYENVEM 333          
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.699e-14
Identity = 59/211 (27.96%), Postives = 107/211 (50.71%), Query Frame = 2
Query:  188 DVVITGDNGTIDGQGEPWWRKFRVGELKYTR--PYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFS-AVIALGS-EMSGGIQDVRAEDITAIDSESGVRIKTAVGRG-GFVKDIYVRRNDMKTMKWAFWITGSYGS 805
            ++V+TG  GT  G+GE  W+    G+       P  ++  + +N++I+ ++ +N+ ++++  V + +V +Q I + AP  SPNTDGI+  +  N  I D  I +GDDCV+V           G  +  + + R+ C      +V +LG  +    +  +   + T I++++G+RIKT  G       DI      M+++K    I  +YGS
Sbjct:  137 NLVLTG-TGTFHGKGEAVWKADGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSV-----------GRGSNNVTVERVICGPGHGLSVGSLGKYKNEEDVSGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQNYGS 335          
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.699e-14
Identity = 56/195 (28.72%), Postives = 93/195 (47.69%), Query Frame = 2
Query:  203 GDNGTIDGQGEPWWR---KFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMSGG-IQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRNDMKTMK 772
            G  G I+G G+ WW+   K    +     P  + + + +N+ + NL + N+    +     + V V  + I AP  SPNTDGI+  +  N R+ +  I +GDDC++++ G           T+ L I  LTC       I +LG + S   +  +  +     +S++GVRIKT  G  G  K+I  +   M+ +K
Sbjct:  163 GSTGIINGNGKTWWQNSCKIDKSKPCTKAPTALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDG-----------TQNLQIFDLTCGPGHGISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVK 346          
The following BLAST results are available for this feature:
BLAST of FC870545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PGLR_VITVI7.136e-13082.06Probable polygalacturonase OS=Vitis vinifera GN=GS... [more]
PGLR_RHIRD9.303e-2134.25Polygalacturonase OS=Rhizobium radiobacter GN=pgl ... [more]
PGLR3_ARATH3.909e-1932.31Probable polygalacturonase At3g15720 OS=Arabidopsi... [more]
PGLR2_CHAOB7.371e-1832.68Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=... [more]
PGLR2_JUNAS3.658e-1734.83Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 ... [more]
ADPG2_ARATH1.537e-1528.21Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN... [more]
PGLR1_PECCC4.472e-1533.04Endo-polygalacturonase OS=Pectobacterium carotovor... [more]
PGLR2_CRYJA9.962e-1531.71Polygalacturonase OS=Cryptomeria japonica PE=1 SV=... [more]
PGLR1_ARATH1.699e-1427.96Exopolygalacturonase clone GBGE184 OS=Arabidopsis ... [more]
ADPG1_ARATH1.699e-1428.72Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAA3CH04ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3CH04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870545 ID=FC870545; Name=FC870545; organism=Citrus clementina; type=EST; length=841bp
GCGGTGGCTGACTGGAAGCTTCTTTCTCACCAGCCATTTCACTTTGTTTC
TTCACAAGGATGCTGTTCTTCTTGCTTCCCAGGATGAGAAAGAATGGCCT
GTGATCGAGCCTCTGCCATCCTACGGTAGAGGAAGGGACACAGAAGGTGG
AAGGTATAGCAGTCTTATTTTTGGAACCAACCTCACTGATGTTGTCATAA
CAGGGGACAATGGAACTATTGATGGTCAGGGTGAGCCCTGGTGGCGAAAA
TTTCGTGTGGGAGAGCTAAAGTATACCCGTCCATACCTTATTGAAATCAT
GCACTCACAGAATATTCAAATATCCAACCTCACATTGATCAATTCCCCAT
CCTGGAATGTTCATCCTGTTTATAGCAGTAGTGTCATAGTTCAAGGCATA
ACGATCCTAGCGCCGGTGACATCTCCAAACACTGATGGTATTAATCCTGA
TTCTTGCACAAACACCAGAATAGAGGACTGCTACATTGTATCAGGGGATG
ACTGTGTAGCAGTTAAAAGTGGCTGGGATCAGTATGGTATTGCTTACGGG
ATGCCAACAAAGCAGCTTATTATCAGACGCCTAACGTGCATTTCTCCATT
CAGTGCAGTGATTGCACTGGGAAGTGAGATGTCCGGTGGGATTCAGGACG
TACGGGCAGAAGATATCACAGCCATTGATTCTGAATCAGGTGTCAGGATC
AAAACTGCTGTTGGAAGAGGAGGTTTTGTGAAGGACATATATGTGAGAAG
AAATGACATGAAAACCATGAAATGGGCATTTTGGATTACAGGCAGTTATG
GTTCTCATCCTGACAAATACTATGATCCGCATGCACTTCCT
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