FC870545
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR_VITVI (Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1) HSP 1 Score: 463.381 bits (1191), Expect = 7.136e-130 Identity = 215/262 (82.06%), Postives = 241/262 (91.98%), Query Frame = 2 Query: 56 KDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGEPWWRKFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRNDMKTMKWAFWITGSYGSHPDKYYDPHALP 841 +DAVLLASQD +WPVI+PLPSYGRGRD GRY+SLIFGTNLTDV+ITGDNGTIDGQG WW++F G+LKYTRPYLIE+M+S +IQISNLTL+NSPSWNVHPVYS ++++QGITILAPV SPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWD+YGIAYGMPTKQL+IRRLTCISP+SAVIALGSEMSGGIQDVRAEDI AI+SESG+RIKT +GRGG+VKDIYVR MKTMKWAFW+TG+YGSH D +YDP A P Sbjct: 124 RDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSLIFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNSPSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKTGIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFP 385
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR_RHIRD (Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 9.303e-21 Identity = 62/181 (34.25%), Postives = 90/181 (49.72%), Query Frame = 2 Query: 290 IEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSG-WDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKT-AVGRGGFVKDIYVRRNDMKTMKWAFWITGSYGSHPDKYYD 826 + ++ Q+ T+ N+ SW +HP + TI+AP SPNTDG NP+SC N I GDDC+AVK+G G + + I R + P + +GSEMSGG+ DV ED I ++ G+R+KT A GG V +I +RR + ++ A Y D + D Sbjct: 25 LHLVSCHKTQLLGFTIRNAASWTIHPQGCEDLTAAASTIIAPHDSPNTDGFNPESCRNVMISGVRFSVGDDCIAVKAGKRGPDGEDDHLAETRGITVRHCLMQPGHGGLVIGSEMSGGVHDVTVEDCDMIGTDRGLRLKTGARSGGGMVGNITMRRVLLDGVQTALSANAHYHCDADGHDD 205
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR3_ARATH (Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.909e-19 Identity = 63/195 (32.31%), Postives = 101/195 (51.79%), Query Frame = 2 Query: 167 IFGTNLTDVVITGDNGTIDGQGEPWWRKFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGG----IQDVRAEDITAIDSESGVRIKTAVGRGGFVKDI 739 I T++ +VI GD G I+GQG WW E K +RP ++ N+++S LT ++SP ++H + V + + I AP +SPNTDGI+ + +N I+DC I +GDDC+A+ SG T + I + C I++GS G +++V ++ + +G RIKT G G+ + I Sbjct: 107 ILFTDIEGLVIEGD-GEINGQGSSWW------EHKGSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSG-----------TSNIHISGIDCGPGHG--ISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQGGSGYARMI 281
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR2_CHAOB (Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 7.371e-18 Identity = 67/205 (32.68%), Postives = 99/205 (48.29%), Query Frame = 2 Query: 182 LTDVVITGDNGTIDGQGEPWWRKFRVGELKYT----------RPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMS-GGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRNDM 760 LTD + G G IDGQG+ WW G+ K RP I+I +S+++ + LTL+NSP +++ V +QG+ I AP SPNTDGI+ + IE C I +GDDC+A+ +G + + I+ L C I +LG + S + V ID+++G+RIKT G G I +M Sbjct: 145 LTDFNLMG-TGVIDGQGQQWW----AGQCKVVNGRTVCNDRNRPTAIKIDYSKSVTVKELTLMNSPEFHLVFGECEGVKIQGLKIKAPRDSPNTDGIDIFASKRFHIEKCVIGTGDDCIAIGTG-----------SSNITIKDLICGPGHGISIGSLGRDNSRAEVSHVHVNRAKFIDTQNGLRIKTWQGGSGLASYITYENVEM 333
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR2_JUNAS (Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.658e-17 Identity = 70/201 (34.83%), Postives = 95/201 (47.26%), Query Frame = 2 Query: 182 LTDVVITGDNGTIDGQGEPWWR------KFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMS-GGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRNDM 760 LTD + G G IDGQG WW R RP I+I S+++ + LTL NSP +++ V +QGI I AP SPNTDGI+ + IE C I +GDDCVAV +G + + I+ LTC I +LG S + V + ID+++G+RIKT G G I +M Sbjct: 146 LTDFNLMG-TGVIDGQGNRWWSDQCKTINGRTVCNDKGRPTAIKIDFSKSVTVKELTLTNSPEFHLVFGECDGVKIQGIKIKAPRDSPNTDGIDIFASKRFEIEKCTIGTGDDCVAVGTG-----------SSNITIKDLTCGPGHGMSIGSLGKGNSRSEVSFVHLDGAKFIDTQNGLRIKTWQGGSGLASHITYENVEM 334
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: ADPG2_ARATH (Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 1.537e-15 Identity = 55/195 (28.21%), Postives = 93/195 (47.69%), Query Frame = 2 Query: 203 GDNGTIDGQGEPWWR---KFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMSGG-IQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRNDMKTMK 772 GD G +DG GE WW+ K + P + +S+++ + NL + N+ + S+V V + + AP SPNTDGI+ + N R+ + I +GDDC++++SG ++ + I +TC I +LG + S + V + +++GVRIKT G G +I + M +K Sbjct: 163 GDTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLKVRNAQQIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSESIIGTGDDCISIESG-----------SQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMDNVK 346
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR1_PECCC (Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=peh PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 4.472e-15 Identity = 74/224 (33.04%), Postives = 105/224 (46.88%), Query Frame = 2 Query: 137 DTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGE--------PWW---RKFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSS--VIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRNDMKTM 769 DT G + I T+ T+ I G GTIDGQG WW +V +LK P LI+I S+N + N++LINSP N H V+S TI P T+ NTDGI+P S N I I +GDD VA+K AY ++ I L +++GSE + G+ +V +D+ + +G+RIK+ G V + MK + Sbjct: 119 DTNGKGCDAFITATSTTNSGIYGP-GTIDGQGGVKLQDKKVSWWDLAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSP--NFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAHSNISTGDDNVAIK--------AYKGRSETRNISILHNEFGTGHGMSIGSE-TMGVYNVTVDDLIMTGTTNGLRIKSDKSAAGVVNGVRYSNVVMKNV 330
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR2_CRYJA (Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.962e-15 Identity = 65/205 (31.71%), Postives = 94/205 (45.85%), Query Frame = 2 Query: 182 LTDVVITGDNGTIDGQGEPWWRKFRVGELKYT----------RPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMS-GGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRNDM 760 LT + G G IDGQG+ WW G+ K+ RP I+ S + I L L+NSP +++ V + GI+I AP SPNTDGI+ + N ++ I +GDDCVA+ +G + ++I L C I +LG E S + V ID+++G+RIKT G G I +M Sbjct: 145 LTGFTLMG-KGVIDGQGKQWW----AGQCKWVNGREICNDRDRPTAIKFDFSTGLIIQGLKLMNSPEFHLVFGNCEGVKIIGISITAPRDSPNTDGIDIFASKNFHLQKNTIGTGDDCVAIGTG-----------SSNIVIEDLICGPGHGISIGSLGRENSRAEVSYVHVNGAKFIDTQNGLRIKTWQGGSGMASHIIYENVEM 333
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: PGLR1_ARATH (Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.699e-14 Identity = 59/211 (27.96%), Postives = 107/211 (50.71%), Query Frame = 2 Query: 188 DVVITGDNGTIDGQGEPWWRKFRVGELKYTR--PYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFS-AVIALGS-EMSGGIQDVRAEDITAIDSESGVRIKTAVGRG-GFVKDIYVRRNDMKTMKWAFWITGSYGS 805 ++V+TG GT G+GE W+ G+ P ++ + +N++I+ ++ +N+ ++++ V + +V +Q I + AP SPNTDGI+ + N I D I +GDDCV+V G + + + R+ C +V +LG + + + + T I++++G+RIKT G DI M+++K I +YGS Sbjct: 137 NLVLTG-TGTFHGKGEAVWKADGCGKKVQCNLPPTSLKFRNMKNVEINGISSVNAKAFHMFLVKTENVNIQNIKLTAPAESPNTDGIHLSNADNVSILDSTIATGDDCVSV-----------GRGSNNVTVERVICGPGHGLSVGSLGKYKNEEDVSGIHVNNCTMIETDNGLRIKTWGGSDPSKAVDIKFENIIMQSVKNPIIIDQNYGS 335
BLAST of FC870545 vs. ExPASy Swiss-Prot
Match: ADPG1_ARATH (Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.699e-14 Identity = 56/195 (28.72%), Postives = 93/195 (47.69%), Query Frame = 2 Query: 203 GDNGTIDGQGEPWWR---KFRVGELKYTRPYLIEIMHSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVI-ALGSEMSGG-IQDVRAEDITAIDSESGVRIKTAVGRGGFVKDIYVRRNDMKTMK 772 G G I+G G+ WW+ K + P + + + +N+ + NL + N+ + + V V + I AP SPNTDGI+ + N R+ + I +GDDC++++ G T+ L I LTC I +LG + S + + + +S++GVRIKT G G K+I + M+ +K Sbjct: 163 GSTGIINGNGKTWWQNSCKIDKSKPCTKAPTALTLYNLKNLNVKNLRVKNAQQIQISIEKCNKVEVSNVEITAPGDSPNTDGIHITNTQNIRVSNSDIGTGDDCISIEDG-----------TQNLQIFDLTCGPGHGISIGSLGDDNSKAYVSGINVDGAKFSESDNGVRIKTYQGGSGTAKNIKFQNIRMENVK 346 The following BLAST results are available for this feature:
BLAST of FC870545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC870545 ID=FC870545; Name=FC870545; organism=Citrus clementina; type=EST; length=841bpback to top |