FC870627

Overview
NameFC870627
Unique NameFC870627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length864
Libraries
Library NameType
AbsAOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC870627_ssr103 microsatellite FC870627_ssr103:103..114. BLAST: Citrus ESTs to Prunus persica proteins V1
FC870627_ssr773 microsatellite FC870627_ssr773:773..784. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig741 contig Ccv1_Contig741:4..867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC870627 vs. ExPASy Swiss-Prot
Match: TRXL6_ARATH (Thioredoxin-like 6, chloroplastic OS=Arabidopsis thaliana GN=At4g29670 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 9.922e-58
Identity = 104/143 (72.73%), Postives = 122/143 (85.31%), Query Frame = 2
Query:  251 PRKRLISFKVHATLAETNQPKWWERNAPNMIDIHSTQEFLKALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDRCSIG 679
            P+ +++  KV   +AET  PKWWERNAPNM+DIHST+EFL ALS AG+RLVIVEFYGTWCASCRALFPKLC+TA EHP+IVFLKVNFDENKPMCKSLNV+VLP+FHFYRGA GQLESFSCSLA   K+K+AI++    +  +G
Sbjct:   76 PKSQVVRVKVDENVAETEPPKWWERNAPNMVDIHSTEEFLSALSGAGERLVIVEFYGTWCASCRALFPKLCKTAVEHPDIVFLKVNFDENKPMCKSLNVRVLPFFHFYRGADGQLESFSCSLA---KVKKAISVSPFPQLELG 215          
BLAST of FC870627 vs. ExPASy Swiss-Prot
Match: TRXL2_ARATH (Thioredoxin-like 2, chloroplastic OS=Arabidopsis thaliana GN=At4g26160 PE=2 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.887e-57
Identity = 111/173 (64.16%), Postives = 127/173 (73.41%), Query Frame = 2
Query:  176 ISNNKRIYPLXXXXXXXGLARFSL------TPRKRLISFKVHATLAETNQPKWWERNA-PNMIDIHSTQEFLKALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDRCS 673
            +S+  R Y L        L   SL      + R + +S KV A  AET QPKWWER A PNMIDI S ++FL AL  AGDRLVIV+FYGTWC SCRA+FPKLC+TA+EHP I+FLKVNFDENK +CKSLNVKVLPYFHFYRGA GQ+ESFSCSLAKFQK++EAI  HN    S
Sbjct:   34 LSSCNRFYGLSSSSSSSSLTTSSLIGNLVFSSRNQSLSVKVQALAAETEQPKWWERKAGPNMIDITSAEQFLNALKDAGDRLVIVDFYGTWCGSCRAMFPKLCKTAKEHPNILFLKVNFDENKSLCKSLNVKVLPYFHFYRGADGQVESFSCSLAKFQKLREAIERHNVGSIS 206          
BLAST of FC870627 vs. ExPASy Swiss-Prot
Match: TRXL1_ARATH (Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.258e-36
Identity = 74/178 (41.57%), Postives = 111/178 (62.36%), Query Frame = 2
Query:  257 KRLISFKVHATLAETNQPKWWERNAP-NMIDIHSTQEFLKALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDRCSIGPPKGVGDLSLEGIS-------------VPLEKPAGS 748
            +R  +     TL      KWWE+    NM +I S QE + +L+ AGD+LV+V+F+   C  C+AL PK+C+ AE +P++ FL+VN++E+K MC SL V VLP+F FYRG+ G++ SFSC+ A  +K ++A+A H  DRCS+GP KG+ +  L  ++             VP+EK A +
Sbjct:   71 RRSSAITAQTTLRIGTAQKWWEKGLKDNMREISSAQELVDSLTNAGDKLVVVDFFSPGCGGCKALHPKICQFAEMNPDVQFLQVNYEEHKSMCYSLGVHVLPFFRFYRGSQGRVCSFSCTNATIKKFRDALAKHGPDRCSLGPTKGLEEKELVALAANKELNFTYTPKPVPVEKEAAT 248          
BLAST of FC870627 vs. ExPASy Swiss-Prot
Match: TRXL7_ARATH (Thioredoxin-like 7, chloroplastic OS=Arabidopsis thaliana GN=At2g33270 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.180e-34
Identity = 67/157 (42.68%), Postives = 107/157 (68.15%), Query Frame = 2
Query:  245 LTPRKRLISF-KVHATLAETNQPKWWERNA-PNMIDIHSTQEFLKALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDRCSIGPPKGVGDLSL 709
            L  +K++ +F +   +L      KWWE+   PNM  + S Q+ + +L  AGD+LV+V+F+   C  C+AL PK+C+ AE++PE+ FL+VN++E++ +C+SLN+ VLP+F FYRG+ G++ SFSC+ A  +K KEA+  H  ++CSIG  KG+ +  L
Sbjct:   62 LFSKKKIPAFVRCQTSLGIGRNQKWWEKELKPNMKSVTSPQDLVVSLRNAGDKLVVVDFFSPSCGGCKALHPKICKIAEKNPEVEFLQVNYEEHRSLCQSLNIHVLPFFRFYRGSSGRVCSFSCTNATIRKFKEALEKHGREQCSIGETKGLEEKEL 218          
BLAST of FC870627 vs. ExPASy Swiss-Prot
Match: TRXL3_ARATH (Thioredoxin-like 3, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.907e-33
Identity = 62/138 (44.93%), Postives = 95/138 (68.84%), Query Frame = 2
Query:  311 KWWERNAP-NMIDIHSTQEFLKALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDRCSIGPPKGVGDLSLEGIS 721
            +WWE++   NM++I S    + +L  AGDRLV+++FY   C  C++L PK+C+ AE +P ++FLKVN +E + MC  LNV VLP+F FYRGA G++ SFSC++A   K K+A+  H ++RCS+G  KG+ +  L  ++
Sbjct:   77 RWWEKSTNHNMLEIQSANHLVDSLLNAGDRLVVLDFYSPGCGGCKSLHPKICQLAETNPNVMFLKVNQEELRTMCHGLNVHVLPFFKFYRGAEGKVCSFSCTIATINKFKKALDKHGSERCSLGDAKGLDEKELAALA 214          
BLAST of FC870627 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.404e-11
Identity = 27/72 (37.50%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  362 EFLKALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYR 577
            +F +AL  AGD+LV+++F  +WC  C+ + PK    A+E P+++F KV+ DEN    ++  ++ +P F FY+
Sbjct:   10 DFDQALKDAGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYK 81          
BLAST of FC870627 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.335e-11
Identity = 36/108 (33.33%), Postives = 61/108 (56.48%), Query Frame = 2
Query:  338 MIDIHSTQEFLKALSQAGDRLVIVEFYGTWCASCRALFP--KLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALH 655
            ++ I +   F  AL  AGD+LV+V+F  TWC  C+ + P  +    +E++  +VFLKV+ D+   +    ++K +P FHFY+    +++ FS   A  Q +K+ I  H
Sbjct:    2 VVHIENLNAFSAALKNAGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQ-KIDEFSG--ANEQTLKQKINDH 106          
BLAST of FC870627 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.100e-11
Identity = 32/95 (33.68%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  362 EFLKALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAI 646
            EF   LS AG +L++V+F  TWC  C+ + P      E++P++VF++++ D+ + +    +VK +P F FY+  + ++  FS   A  +K++EAI
Sbjct:   10 EFRAELSNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKN-NEKVHEFSG--ANKEKLEEAI 101          
The following BLAST results are available for this feature:
BLAST of FC870627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TRXL6_ARATH9.922e-5872.73Thioredoxin-like 6, chloroplastic OS=Arabidopsis t... [more]
TRXL2_ARATH2.887e-5764.16Thioredoxin-like 2, chloroplastic OS=Arabidopsis t... [more]
TRXL1_ARATH6.258e-3641.57Thioredoxin-like 1 OS=Arabidopsis thaliana GN=At1g... [more]
TRXL7_ARATH1.180e-3442.68Thioredoxin-like 7, chloroplastic OS=Arabidopsis t... [more]
TRXL3_ARATH2.907e-3344.93Thioredoxin-like 3, chloroplastic OS=Arabidopsis t... [more]
THIO_GEOCY1.404e-1137.50Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
THIO_ICTPU5.335e-1133.33Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
THIO_OPHHA9.100e-1133.68Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
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Properties
Property NameValue
Genbank descriptionKN0AAA3DC09ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3DC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC870627 ID=FC870627; Name=FC870627; organism=Citrus clementina; type=EST; length=864bp
GCGGGGATTGTCATTTCTCTTCATTTTCAAAATTTAATTCTATCTCGGCA
ACCCGTAAATGGCATATGTTATAAGGGCATGTTCATTTCAGTCACTTCGT
TTTTCTTCTTCTTCAGTGCTCACCTCATTTTCCTCAACGTCGGGTTGCCT
TCAACTGGGTCTGCCTCCTAATCAAATTTCAAATAATAAGAGAATCTATC
CTCTTGCTGCTGCATCTTCTTCTGCTGGCCTTGCTCGCTTTTCATTGACA
CCCAGGAAGCGTTTAATCTCATTTAAGGTACATGCAACCCTTGCTGAAAC
CAACCAGCCAAAATGGTGGGAAAGAAACGCACCAAATATGATTGACATTC
ATTCTACACAGGAATTTTTAAAAGCCCTGAGTCAAGCTGGTGATAGATTA
GTCATTGTTGAATTTTATGGAACCTGGTGTGCATCATGCCGGGCATTATT
TCCAAAGCTCTGTAGGACAGCTGAGGAACATCCTGAGATTGTATTCCTAA
AAGTCAATTTTGATGAGAACAAACCAATGTGCAAAAGTTTGAATGTGAAG
GTGCTTCCTTATTTCCACTTTTACCGCGGCGCCCATGGACAGTTAGAATC
ATTTTCGTGTTCACTTGCTAAGTTTCAAAAAATAAAAGAGGCCATAGCAC
TGCACAATACGGATCGTTGCAGCATTGGCCCACCAAAGGGAGTTGGAGAT
CTCAGTCTTGAAGGTATATCGGTTCCATTGGAGAAGCCGGCAGGATCAAG
TTAAAGCGTTAAACATACGACTATTAATTAATTAAGCATTAATTTGTCTA
GGGATTGTGCATGCTTGTGTATGTTACTGACCGAAAAGCATATGCGGTGA
GCTACAACTGGTAT
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