FC872144

Overview
NameFC872144
Unique NameFC872144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length425
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC872144 vs. ExPASy Swiss-Prot
Match: AFC3_ARATH (Serine/threonine-protein kinase AFC3 OS=Arabidopsis thaliana GN=AFC3 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 2.607e-27
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 2
Query:    2 KYFRRGSRLNWPEGAVSRESIKAVKKLDRLKNMVSLHVDRARSTLTDLLHGLLRYDPSERLTARQALDHPFFRN 223
            KYFRRG RLNWPEGA SRESI+AVK+LDRLK+MVS HVD  RS   DLL+GLL YDPSERLTA +ALDHPFF++
Sbjct:  325 KYFRRGCRLNWPEGANSRESIRAVKRLDRLKDMVSKHVDNTRSRFADLLYGLLAYDPSERLTANEALDHPFFKS 398          
BLAST of FC872144 vs. ExPASy Swiss-Prot
Match: AFC1_ARATH (Serine/threonine-protein kinase AFC1 OS=Arabidopsis thaliana GN=AFC1 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.525e-22
Identity = 48/77 (62.34%), Postives = 59/77 (76.62%), Query Frame = 2
Query:    2 KYFRRGSRLNWPEGAVSRESIKAVKKLDRLKNMVSLHVDRARSTLTDLLHGLLRYDPSERLTARQALDHPFFRNLNE 232
            KYFRRG++L+WPEGA SR+S+KAV KL RL N++  HVD +   L DLL GLLRYDP+ER  AR+AL+HPFF    E
Sbjct:  372 KYFRRGAKLDWPEGATSRDSLKAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPTERFKAREALNHPFFTRSRE 448          
BLAST of FC872144 vs. ExPASy Swiss-Prot
Match: AFC2_ARATH (Serine/threonine-protein kinase AFC2 OS=Arabidopsis thaliana GN=AFC2 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.000e-19
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 2
Query:    2 KYFRRGSRLNWPEGAVSRESIKAVKKLDRLKNMVSLHVDRARSTLTDLLHGLLRYDPSERLTARQALDHPFF 217
            KY RRG RL+WP+GA SR+S+KAV KL RL+N++  HVD +   L +++ GLLR+DPSER+TAR+AL HPFF
Sbjct:  353 KYVRRG-RLDWPDGATSRDSLKAVLKLPRLQNLIMQHVDHSAGELINMVQGLLRFDPSERITAREALRHPFF 423          
The following BLAST results are available for this feature:
BLAST of FC872144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AFC3_ARATH2.607e-2777.03Serine/threonine-protein kinase AFC3 OS=Arabidopsi... [more]
AFC1_ARATH2.525e-2262.34Serine/threonine-protein kinase AFC1 OS=Arabidopsi... [more]
AFC2_ARATH2.000e-1961.11Serine/threonine-protein kinase AFC2 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC05701B06SK AbsCOv1 Citrus clementina cDNA clone C05701B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872144 ID=FC872144; Name=FC872144; organism=Citrus clementina; type=EST; length=425bp
AAAATATTTCAGGAGAGGATCAAGACTCAATTGGCCTGAGGGGGCAGTTT
CTAGGGAGAGTATTAAAGCCGTGAAGAAGCTAGATCGTCTGAAGAATATG
GTATCGCTTCATGTAGACAGAGCAAGGTCTACTCTCACCGATTTGTTGCA
TGGTTTGTTGAGATATGATCCATCCGAACGTCTCACTGCTCGGCAAGCTC
TCGATCACCCCTTCTTTAGAAATCTAAATGAATAAAATGGTTAGTTGTAA
TGGTTGTTTATACGAAATGTAAGGCTCAGACTGAGTTTCCCATTTACTTG
TAATCTGTGCATAAATGTTAACTTAATGAAAATGTTTTGTTGTCTTNTGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAATTTTGGGGGCCCCCCCGCCCCA
TTAATTTTTAAATTGGAAAAATTTT
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