FC872368
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872368 vs. ExPASy Swiss-Prot
Match: ATL4E_ARATH (RING-H2 finger protein ATL4E OS=Arabidopsis thaliana GN=ATL4E PE=2 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.112e-24 Identity = 56/121 (46.28%), Postives = 77/121 (63.64%), Query Frame = 3 Query: 6 DTQCSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDIQQETIQESSVTENADGASDQQRSEAYEEPQAVKHS---ESRNEDGTTLQNSPKEQGRSS 359 D+QCS+CL DYQAE+KLQQ+P+CGH FHM+CID WLT+HTTCPLCRLSL+ K S +LS E + S EN++G + ++ +A+ H+ E N D + +E R+S Sbjct: 108 DSQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLI--PKPSLDLSHQSTEIV---SSIENSNGGEASTQPDSQSATEAISHTDDVEEGNRDSQEVSKETEENDRNS 223
BLAST of FC872368 vs. ExPASy Swiss-Prot
Match: ATL4F_ARATH (RING-H2 finger protein ATL4F OS=Arabidopsis thaliana GN=ATL4F PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.602e-24 Identity = 54/121 (44.63%), Postives = 74/121 (61.16%), Query Frame = 3 Query: 6 DTQCSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDIQQETIQESSVTENADGASDQQRSEAYEEPQAVKH---SESRNEDGTTLQNSPKEQGRSS 359 DTQCS+CL DYQAE+KLQQ+P+CGH FHM+CID WLT+HTTCPLCRLSL+ D+ ++I+ S EN +G + ++ +A+ H E N D + +E R+S Sbjct: 94 DTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSLIPKPSV-----DLSHQSIEIVSSIENTNGGEASTQPDSQSATEAIIHIDDVEEGNRDSIEVVKESEENDRNS 209
BLAST of FC872368 vs. ExPASy Swiss-Prot
Match: ATL1G_ARATH (RING-H2 finger protein ATL1G OS=Arabidopsis thaliana GN=ATL1G PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 4.121e-20 Identity = 54/140 (38.57%), Postives = 74/140 (52.86%), Query Frame = 3 Query: 6 DTQCSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDIQQETIQESSVTENADGASDQQRSEAYEEPQAVKHSESRNEDGTTLQNSPKEQGRSSH-SLDHEREVRDTTNETGEHEQ 422 D+QCS+CL DYQ DKLQQIP C H FHMDCID WLT+HTTCPLCRL+L+ P+++ D S+ + S Q SE ES + + + + P+ Q +H + + E + + HEQ Sbjct: 97 DSQCSVCLGDYQPNDKLQQIPVCKHTFHMDCIDLWLTSHTTCPLCRLALI-PSRSRQSQDD------PVPSLVSPDEEVSSQPESEPVNHRVVSTQPESEPVNHSGVSSQPESQPVVNHRGVSSQPESQPVNHINDGHEQ 229
BLAST of FC872368 vs. ExPASy Swiss-Prot
Match: ATL4K_ARATH (RING-H2 finger protein ATL4K OS=Arabidopsis thaliana GN=ATL4K PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 8.892e-15 Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3 Query: 15 CSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDIQQETIQESSVTENADGASDQQ 254 C++CL +++ EDKL+ +P C HAFHMDCID WL +H+TCPLCR SLL S+LS Q V E+A S ++ Sbjct: 134 CAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLCRSSLL------SDLSSHQDPRSSFLLVLESASDHSSRE 207
BLAST of FC872368 vs. ExPASy Swiss-Prot
Match: ATL1P_ARATH (RING-H2 finger protein ATL1P OS=Arabidopsis thaliana GN=ATL1P PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.764e-14 Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = 3 Query: 12 QCSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDIQQETIQESSVTENADGASDQQRSEAYEEPQAV 287 +CS+CL++ DK + +P C H+FH++CID W +H+TCP+CR ++L P +ASS+ + + + + T N A Q + + E P V Sbjct: 126 ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPICRNTVLGPEQASSKRVEQVPDNAENAGTTNNNHDALSQLSTSSPEFPTNV 217
BLAST of FC872368 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 1.284e-13 Identity = 44/146 (30.14%), Postives = 73/146 (50.00%), Query Frame = 3 Query: 9 TQCSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDIQQETI----------QESSVTENADGASDQQRSEAYEEPQAVKHSESR-NEDGTTLQNSPKEQGRSSHSL-DHEREVRDTTNETG 410 + CS+CL+++Q + L+ +P C HAFH+ CID WL +H+ CPLCR ++ ++ E+ D+ + I +S V N D + + R+E E K E + + DG +++ G S+ D RE+ D G Sbjct: 157 SDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIV--TSSAVEIVDLTNQQIVTENNSISTGDDSVVVVNLDLENSRSRNETVNEGSTPKPPEMQDSRDGEERRSASLNSGGGVVSIADILREIEDDEESAG 300
BLAST of FC872368 vs. ExPASy Swiss-Prot
Match: ATL2C_ARATH (Putative RING-H2 finger protein ATL2C OS=Arabidopsis thaliana GN=ATL2C PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.284e-13 Identity = 66/230 (28.70%), Postives = 97/230 (42.17%), Query Frame = 3 Query: 15 CSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELS-------DIQQETIQESSVTE---------NADGASDQQRS-----------EAYEE---PQAVKHSESRNED----------GTTLQNSPKEQGRSSHSLDHEREVRDTTNETGEHEQSKKIPDLTLKSP*WIQTPSCIPFFAPALEQLEASVITKFRKISMSNICLTGKCE 584 C +CL +++ EDKL+ +P C HAFH++CID WL +H+TCPLCR +LL+ + LS + +Q + V E N D S + RS + +E P VK + RN D + NS GR S+ + D H +KK+ C F P ++ +E SV+ + S+S I L GK E Sbjct: 126 CPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLCRSNLLSGFSSHHNLSSSYLLVLESEQSSRDMVPVLESNSQLGYDVNNDSESTRIRSGRKSCDPDGDMDGLDEKVVPLEVKLGKFRNIDHVGEGSDQKKNSISGNSKNVDGRRCLSMGSYEYIMDQEATLKVHVSTKKLSGKDRVPSHRTVMSEC--GFDPTVKGIEKSVVER-ESFSLSKIWLRGKKE 352
BLAST of FC872368 vs. ExPASy Swiss-Prot
Match: ATL5E_ARATH (Putative RING-H2 finger protein ATL5E OS=Arabidopsis thaliana GN=ATL5E PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.879e-13 Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 3 Query: 15 CSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDI 191 CS+CL DY+A + ++ IP C H FH DC+D WL T TCPLCR S AP++ ++ LSD+ Sbjct: 94 CSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCRNS-PAPSRLATPLSDL 151
BLAST of FC872368 vs. ExPASy Swiss-Prot
Match: ATL5I_ARATH (RING-H2 finger protein ATL5I OS=Arabidopsis thaliana GN=ATL5I PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 8.323e-13 Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 3 Query: 15 CSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPA-KASSELSDIQQETIQESSVTEN 230 C++CL ++ +DKL+ +P C HAFH++CID WL +++TCPLCR +L +P + + D E VTEN Sbjct: 143 CAVCLCEFSEKDKLRLLPMCSHAFHLNCIDTWLQSNSTCPLCRGTLFSPGFSMENPMFDFDDIREDEEGVTEN 215
BLAST of FC872368 vs. ExPASy Swiss-Prot
Match: ATL5F_ARATH (RING-H2 finger protein ATL5F OS=Arabidopsis thaliana GN=ATL5F PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.422e-12 Identity = 31/84 (36.90%), Postives = 50/84 (59.52%), Query Frame = 3 Query: 9 TQCSLCLADYQAEDKLQQIPACGHAFHMDCIDHWLTTHTTCPLCRLSLLAPAKASSELSDIQQETIQESSVTENADGASDQQRS 260 T+CS+CL +++ ++ L+ +P C HAFH++CID WL +H CPLCR +L + + ++ + ESS + G D RS Sbjct: 133 TECSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSESS--NDLRGRQDSSRS 214 The following BLAST results are available for this feature:
BLAST of FC872368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 27
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872368 ID=FC872368; Name=FC872368; organism=Citrus clementina; type=EST; length=929bpback to top |