FC872408

Overview
NameFC872408
Unique NameFC872408
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig164 contig Ccv1_Contig164:1084..1612. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC2_PEA (Pyruvate decarboxylase isozyme 2 (Fragment) OS=Pisum sativum GN=PDC2 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 2.556e-57
Identity = 102/107 (95.33%), Postives = 104/107 (97.20%), Query Frame = 3 
Query:    6 GQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPPNPQ 326
            GQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEEL+EAI  ATGPKKD LCFIEV+VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  299 GQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELVEAIAKATGPKKDSLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 405
[Close]
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSI (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. indica GN=PDC2 PE=2 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 2.476e-52
Identity = 95/106 (89.62%), Postives = 98/106 (92.45%), Query Frame = 3 
Query:    9 QKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPPNPQ 326
            Q +IIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWT+KV CEEEL EAI  A G KKDCLCFIEV+ HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  501 QNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTSKVKCEEELTEAIGMALGEKKDCLCFIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 606
[Close]
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSJ (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. japonica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 7.203e-52
Identity = 93/107 (86.92%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 GQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPPNPQ 326
            GQK+IIFLINNGGYTIEVEIHDGPYNVIKNW+YTGL+DAIHN +G CWT KV  EEELIEAI  ATG KKDCLCFIE++VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  499 GQKSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLIDAIHNSDGNCWTKKVRTEEELIEAIATATGAKKDCLCFIEIIVHKDDTSKELLEWGSRVSAANSRPPNPQ 605
[Close]
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC1_ORYSI (Pyruvate decarboxylase isozyme 1 OS=Oryza sativa subsp. indica GN=PDC1 PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 7.203e-52
Identity = 93/107 (86.92%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 GQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPPNPQ 326
            GQK+IIFLINNGGYTIEVEIHDGPYNVIKNW+YTGL+DAIHN +G CWT KV  EEELIEAI  ATG KKDCLCFIE++VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  499 GQKSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLIDAIHNSDGNCWTKKVRTEEELIEAIATATGAKKDCLCFIEIIVHKDDTSKELLEWGSRVSAANSRPPNPQ 605
[Close]
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC2_TOBAC (Pyruvate decarboxylase isozyme 2 OS=Nicotiana tabacum GN=PDC2 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 6.098e-51
Identity = 93/106 (87.74%), Postives = 95/106 (89.62%), Query Frame = 3 
Query:    9 QKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPPNPQ 326
            QK IIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEG CWT KV  EEEL EAI  ATG KKDCLCFIEV+VHKDDTSKELLEWGSRV +AN RPPNPQ
Sbjct:  509 QKNIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGNCWTMKVRTEEELTEAIATATGEKKDCLCFIEVIVHKDDTSKELLEWGSRVCSANGRPPNPQ 614
[Close]
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC2_ORYSJ (Pyruvate decarboxylase isozyme 2 OS=Oryza sativa subsp. japonica GN=PDC2 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.358e-50
Identity = 94/106 (88.68%), Postives = 98/106 (92.45%), Query Frame = 3 
Query:    9 QKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPPNPQ 326
            Q +IIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWT+KV CEEEL EAI  A G +KDCLCFIEV+ HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  501 QNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTSKVKCEEELTEAIGMALG-EKDCLCFIEVIAHKDDTSKELLEWGSRVSAANSRPPNPQ 605
[Close]
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC2_MAIZE (Pyruvate decarboxylase isozyme 2 (Fragment) OS=Zea mays GN=PDC2 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 2.317e-50
Identity = 92/106 (86.79%), Postives = 97/106 (91.51%), Query Frame = 3 
Query:    9 QKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPPNPQ 326
            Q +IIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLV+A HNGEG C+T KV  EEEL EA+E A GPKKDCLCFIEV+VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:    1 QNSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVEAFHNGEGACYTAKVRTEEELTEALEAALGPKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 106
[Close]
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC1_MAIZE (Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PDC1 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.026e-50
Identity = 92/107 (85.98%), Postives = 97/107 (90.65%), Query Frame = 3 
Query:    6 GQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPPNPQ 326
            GQK+IIFLINNGGYTIEVEIHDGPYNVIKNW+YTGLV+AIHN EG CWT KV  EE+L EAI   TG KKDCLCFIEV+VHKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  504 GQKSIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVNAIHNSEGNCWTMKVRTEEQLKEAIATVTGAKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 610
[Close]
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC3_ORYSJ (Pyruvate decarboxylase isozyme 3 OS=Oryza sativa subsp. japonica GN=PDC3 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 7.454e-49
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = 3 
Query:    6 GQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPPNPQ 326
            GQ++IIFLINNGGYTIEVEIHDGPYNVIKNW+Y GLV+AIHNGEG+CW T+V CEEEL  AI  ATG K D LCFIEV+ HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  481 GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYVGLVNAIHNGEGRCWATRVRCEEELEAAIATATGDKADSLCFIEVVAHKDDTSKELLEWGSRVSAANSRPPNPQ 587
[Close]
BLAST of FC872408 vs. ExPASy Swiss-Prot
Match: PDC3_ORYSI (Pyruvate decarboxylase isozyme 3 OS=Oryza sativa subsp. indica GN=PDC3 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 7.454e-49
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = 3 
Query:    6 GQKTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHNGEGKCWTTKVFCEEELIEAIENATGPKKDCLCFIEVLVHKDDTSKELLEWGSRVSAANSRPPNPQ 326
            GQ++IIFLINNGGYTIEVEIHDGPYNVIKNW+Y GLV+AIHNGEG+CW T+V CEEEL  AI  ATG K D LCFIEV+ HKDDTSKELLEWGSRVSAANSRPPNPQ
Sbjct:  481 GQRSIIFLINNGGYTIEVEIHDGPYNVIKNWDYVGLVNAIHNGEGRCWATRVRCEEELEAAIATATGDKADSLCFIEVVAHKDDTSKELLEWGSRVSAANSRPPNPQ 587
The following BLAST results are available for this feature:
BLAST of FC872408 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PDC2_PEA2.556e-5795.33Pyruvate decarboxylase isozyme 2 (Fragment) OS=Pis... [more]
PDC2_ORYSI2.476e-5289.62Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC1_ORYSJ7.203e-5286.92Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC1_ORYSI7.203e-5286.92Pyruvate decarboxylase isozyme 1 OS=Oryza sativa s... [more]
PDC2_TOBAC6.098e-5187.74Pyruvate decarboxylase isozyme 2 OS=Nicotiana taba... [more]
PDC2_ORYSJ1.358e-5088.68Pyruvate decarboxylase isozyme 2 OS=Oryza sativa s... [more]
PDC2_MAIZE2.317e-5086.79Pyruvate decarboxylase isozyme 2 (Fragment) OS=Zea... [more]
PDC1_MAIZE3.026e-5085.98Pyruvate decarboxylase isozyme 1 OS=Zea mays GN=PD... [more]
PDC3_ORYSJ7.454e-4983.18Pyruvate decarboxylase isozyme 3 OS=Oryza sativa s... [more]
PDC3_ORYSI7.454e-4983.18Pyruvate decarboxylase isozyme 3 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1BD11ZM1 AbsCOv1 Citrus clementina cDNA clone KN0AAB1BD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872408 ID=FC872408; Name=FC872408; organism=Citrus clementina; type=EST; length=529bp
GGGGTGGGCAGAAGACTATAATCTTCCTGATTAACAATGGTGGTTACACC
ATTGAAGTTGAGATCCATGATGGACCGTACAATGTGATCAAGAACTGGAA
CTACACCGGGTTGGTTGATGCAATCCACAATGGCGAAGGCAAGTGCTGGA
CAACCAAGGTCTTCTGCGAGGAGGAGCTCATCGAAGCCATTGAGAACGCT
ACTGGACCCAAGAAGGATTGCTTGTGCTTCATTGAAGTACTTGTTCACAA
GGATGATACAAGCAAAGAGCTTTTGGAATGGGGCTCCAGGGTCTCCGCTG
CCAATAGCCGCCCACCAAATCCTCAGTAGATATGAGGCGGCTCATATTGC
AAATTGCACTCTACTACCATTTATAGCCAAATTAAATGCGCGCATGTCTT
TTCTGTGGTTACTTTACTAAGTTTTGGGTATTTTGAACTATTTGCTGGTT
TCTAATGTAAATTCATTTTAAAATTTAATATCTACTAAATCCTCTCCATT
GCGTAAAAAAAAAAAAAAAAAAAAAAAAA
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