FC872976

Overview
NameFC872976
Unique NameFC872976
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length798
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1157 contig Ccv1_Contig1157:1..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP5_ORYSJ (Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.444e-70
Identity = 132/193 (68.39%), Postives = 145/193 (75.13%), Query Frame = 1
Query:    4 HSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEP-ITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            H KQVSPRLP  NY + ++SYEL VLR RGPRRM C M +IP   I+EGG APTPT    S DEQ  + ++ KGKEP I +                  PL LKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVA+V+PS  +P AEQEKVILQFGKIGKDIFTMDY YPLSAFQAFAICL+SFDTKPACE
Sbjct:  236 HFKQVSPRLPLGNYNVATVSYELTVLRNRGPRRMQCTMHSIPALCIQEGGKAPTPTGIIHSLDEQVPALSTSKGKEPAIEFSSTSLSADLSGPVCTNEVPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVASVDPSLGIPAAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLTSFDTKPACE 428          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP6_ORYSJ (Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.149e-57
Identity = 119/190 (62.63%), Postives = 135/190 (71.05%), Query Frame = 1
Query:   13 QVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPL-AEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            QVSPR+PA NY +  ISYELNVL  RGPRRMNCIM +IP S+++EGG APT T F  S  + F S +  + K                      + L LKNK+PRWHEQLQCWCLNFRGRVTVASVKNFQLVA+ E   N P   EQ+KVILQFGKIGKD+FTMDY YP+SAFQ+FAICLSSFDTK ACE
Sbjct:  223 QVSPRVPAGNYPVSHISYELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEFPLSGLDSFPSISFFRSKSA------RIDSATSQLSTQKEEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDE---NGPTNQEQDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 403          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP2_ARATH (Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.149e-57
Identity = 117/192 (60.94%), Postives = 136/192 (70.83%), Query Frame = 1
Query:    4 HSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            H KQ +P+LP  +  +G+I+YELNVLRTRGPRRM+C M +IP SS+    A P   S  Q  +E+  S  S KG+   T                  QPL LKNK+PRWHEQLQCWCLNF+GRVTVASVKNFQLVA ++ S + P  E E+VILQFGKIGKDIFTMDY YPLSAFQAFAIC+SSFDTKPACE
Sbjct:  213 HPKQAAPKLPTNSSTVGNITYELNVLRTRGPRRMHCAMDSIPLSSVI---AEP---SVVQGIEEEVSSSPSPKGETITT-----DKEIPDNSPSLRDQPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAEIDASLDAPPEEHERVILQFGKIGKDIFTMDYRYPLSAFQAFAICISSFDTKPACE 393          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP3_ARATH (Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.830e-56
Identity = 115/190 (60.53%), Postives = 128/190 (67.37%), Query Frame = 1
Query:   10 KQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            KQVSPR+P+ NY +  ISYELNVL +RGPRRM C+M  IP S++E GG APT T    S  + F SF+  + K                        L LKNKAPRWHEQLQCWCLNF GRVTVASVKNFQLVAA E     P  E E VILQFGK+GKD+FTMDY YP+SAFQAF ICLSSFDTK ACE
Sbjct:  223 KQVSPRIPSGNYPVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFSFFRSKS----IRAESLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAAPENGPAGP--EHENVILQFGKVGKDVFTMDYQYPISAFQAFTICLSSFDTKIACE 406          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP11_ORYSJ (Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.697e-56
Identity = 114/191 (59.69%), Postives = 129/191 (67.54%), Query Frame = 1
Query:    7 SKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            S  +SPR+PA NY +  ISYELNVL +RGPRRM+C M +IP S+IE+GG APT T F  S+ E F S    K K                        L LKNK+PRWHE LQCWCLNF GRVTVASVKNFQLVA+ E   N    E + VILQFGK+GKD+FTMDY YP+SAFQAFAICLSSFDTK ACE
Sbjct:  224 SNHLSPRIPAGNYPVSHISYELNVLGSRGPRRMHCAMDSIPVSAIEQGGTAPTQTEFPLSYHESFTSIPFFKSKS------VRANNSTASLLTQNGSKLVLKNKSPRWHEHLQCWCLNFHGRVTVASVKNFQLVASDE--SNPTNQEHDDVILQFGKVGKDMFTMDYRYPISAFQAFAICLSSFDTKIACE 406          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP6_ARATH (Tubby-like F-box protein 6 OS=Arabidopsis thaliana GN=TULP6 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.306e-56
Identity = 117/196 (59.69%), Postives = 134/196 (68.37%), Query Frame = 1
Query:    7 SKQVSPRLPAYN--YRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFAQSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSH---NVPLAEQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            S QVSP + + +  Y I SI YELNVLRTRGPRRM CIM +IP S+I+EGG   +PT F              K K+P+                   +PL LKNK+PRWHEQLQCWCLNF+GRVTVASVKNFQLVAA   +    N+P  EQ++VILQFGKIGKDIFTMDY YP+SAFQAFAICLSSFDTKP CE
Sbjct:  231 SMQVSPWVSSSSSSYNIASILYELNVLRTRGPRRMQCIMHSIPISAIQEGGKIQSPTEFTNQ---------GKKKKKPLM----DFCSGNLGGESVIKEPLILKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAAEAGKNMNIPEEEQDRVILQFGKIGKDIFTMDYRYPISAFQAFAICLSSFDTKPVCE 413          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.306e-56
Identity = 119/218 (54.59%), Postives = 140/218 (64.22%), Query Frame = 1
Query:    1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPT-PTS-FAQSFDEQFFS--------------FTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLAEQ---------EKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            F+S++VSP+ P+  Y I  +SYELNVL TRGPRRMNC+M +IP SS+E GG  P  P S  A+S DE F S              F+S +  +                     +PL L+NKAPRWHEQLQCWCLNF+GRVTVASVKNFQLVAA +P+   P   Q         +KVILQFGK+ KD+FTMDY YPLSAFQAFAICLSSFDTK ACE
Sbjct:  228 FYSRKVSPKNPSSTYSIAQVSYELNVLGTRGPRRMNCVMHSIPASSLEAGGTVPCQPDSVLARSLDESFGSISFSKSSIMDRSIRFSSSRYSDISVGGPMVGGQALGDSDESKERPLILRNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAATQPAAGAPTPSQPAPPPPPDHDKVILQFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP10_ARATH (Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.076e-55
Identity = 121/223 (54.26%), Postives = 142/223 (63.68%), Query Frame = 1
Query:    1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPT------------------SFAQS-FDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPSHNVPLA-----------EQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            FHS++VSP++P+ +Y I  I+YELNVL TRGPRRM+CIM +IP SS+E GG+ P                     SF++S FD +   F+S +  E                     +PL LKNK PRWHEQLQCWCLNFRGRVTVASVKNFQLVAA +P      A           EQ+KVILQFGK+GKD+FTMDY YPLSAFQAFAICLSSFDTK ACE
Sbjct:  230 FHSRRVSPKVPSGSYNIAQITYELNVLGTRGPRRMHCIMNSIPISSLEPGGSVPNQPEKLVPAPYSLDDSFRSNISFSKSSFDHRSLDFSSSRFSE-------MGISCDDNEEEASFRPLILKNKQPRWHEQLQCWCLNFRGRVTVASVKNFQLVAARQPQPQGTGAAAAPTSAPAHPEQDKVILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP8_ORYSJ (Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.649e-54
Identity = 113/218 (51.83%), Postives = 141/218 (64.68%), Query Frame = 1
Query:    1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAP------TPTSFAQSFD-----------EQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXXQ-PLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAA-VEPSHNVPLA------EQEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            F+SK+VSP++P+ +Y I  ++YELNVL TRGPRRM+C+M +IP SS+E GG  P       P +F +SF            ++   F+S +      +                 + PL L+NKAPRWHEQLQCWCLNFRGRVT+ASVKNFQL+AA  +P    P        EQ+K+ILQFGK+ KD+FTMDY YPLSAFQAFAICLSSFDTK ACE
Sbjct:  228 FNSKKVSPKMPSGSYNIAQVTYELNVLGTRGPRRMHCVMHSIPASSVEPGGIVPGQPEQIVPRAFEESFRSTTSFSKSSIMDRSMDFSSSRDFSSARFSDIAGGTINGDEEGQNKERPLVLRNKAPRWHEQLQCWCLNFRGRVTIASVKNFQLIAAPAQPPAGAPTPSQPAPPEQDKIILQFGKVAKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 445          
BLAST of FC872976 vs. ExPASy Swiss-Prot
Match: TLP1_ARATH (Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 8.522e-53
Identity = 117/229 (51.09%), Postives = 138/229 (60.26%), Query Frame = 1
Query:    1 FHSKQVSPRLPAYNYRIGSISYELNVLRTRGPRRMNCIMATIPFSSIEEGGAAPTPTSFA---QSFDEQFFSFTSLKGKEPITYXXXXXXXXXXXXXXXXX-----------------QPLALKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVEPS-------HNVPLAE---------QEKVILQFGKIGKDIFTMDYHYPLSAFQAFAICLSSFDTKPACE 579
            F+SK+VSP++P+ +Y+I  +SYELNVL TRGPRRM+C M +IP SS+ EGG  P            DE F S TS   ++ ITY                                   PL LKNK PRWHEQLQCWCLNFRGRVTVASVKNFQL+AA +P           PL +          +K+ILQFGK+GKD+FTMD+ YPLSAFQAFAICLSSFDTK ACE
Sbjct:  228 FYSKRVSPKVPSGSYKIAQVSYELNVLGTRGPRRMHCAMNSIPASSLAEGGTVPGQPDIIVPRSILDESFRSITSSSSRK-ITYDYSNDFSSARFSDILGPLSEDQEVVLEEGKERNSPPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIAANQPQPQPQPQPQPQPLTQPQPSGQTDGPDKIILQFGKVGKDMFTMDFRYPLSAFQAFAICLSSFDTKLACE 455          
The following BLAST results are available for this feature:
BLAST of FC872976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TLP5_ORYSJ3.444e-7068.39Tubby-like F-box protein 5 OS=Oryza sativa subsp. ... [more]
TLP6_ORYSJ1.149e-5762.63Tubby-like F-box protein 6 OS=Oryza sativa subsp. ... [more]
TLP2_ARATH1.149e-5760.94Tubby-like F-box protein 2 OS=Arabidopsis thaliana... [more]
TLP3_ARATH2.830e-5660.53Tubby-like F-box protein 3 OS=Arabidopsis thaliana... [more]
TLP11_ORYSJ3.697e-5659.69Tubby-like F-box protein 11 OS=Oryza sativa subsp.... [more]
TLP6_ARATH6.306e-5659.69Tubby-like F-box protein 6 OS=Arabidopsis thaliana... [more]
TLP14_ORYSJ6.306e-5654.59Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]
TLP10_ARATH1.076e-5554.26Tubby-like F-box protein 10 OS=Arabidopsis thalian... [more]
TLP8_ORYSJ2.649e-5451.83Tubby-like F-box protein 8 OS=Oryza sativa subsp. ... [more]
TLP1_ARATH8.522e-5351.09Tubby-like F-box protein 1 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2BA10FM1 AbsDev Citrus clementina cDNA clone KN0AAI2BA10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872976 ID=FC872976; Name=FC872976; organism=Citrus clementina; type=EST; length=798bp
TTCCATTCTAAGCAGGTGTCTCCAAGATTACCTGCATATAACTACAGAAT
AGGCTCCATCTCCTATGAGCTTAATGTTCTCCGCACTAGGGGACCAAGGA
GAATGAATTGCATCATGGCCACTATTCCTTTCTCTTCCATTGAGGAAGGG
GGGGCAGCCCCAACACCAACATCTTTCGCACAGTCATTTGATGAGCAATT
TTTCTCCTTCACAAGTTTGAAAGGTAAGGAACCAATCACCTATAGTAGCT
CTCCAAGCCCCTCACTGTCACTGGCATCAACTCCAGGCTCTCCACAGCCA
CTGGCTCTTAAAAATAAGGCTCCAAGATGGCATGAGCAGCTACAATGTTG
GTGCCTAAATTTTCGAGGGCGTGTCACAGTGGCTTCTGTTAAGAATTTCC
AACTTGTGGCAGCTGTTGAGCCATCTCACAATGTGCCTCTAGCAGAACAA
GAAAAGGTAATTCTGCAATTTGGAAAGATCGGGAAAGATATCTTCACTAT
GGATTATCACTACCCACTCTCTGCCTTCCAGGCCTTTGCCATCTGTCTCA
GCAGCTTTGACACCAAACCAGCCTGTGAATAATGGTAATCATGAAGGGTG
GCATTTGTTGCCATCATTCACCGAATTGCTTCCTCAAGTTTTGTTAGTTT
GTTAATGGGCTTTGTGGAAGCTGATCATCCATAGTCATTTACCAGTTAAT
ATTAACACTGTGGTTGGTTCCAATCTTACAGCTCGGAAAGTTTAACTTGT
ATTTCGTATCTATCATCATGGCATTATTAAAACAAAATTATAAGAAGT
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