FC873058

Overview
NameFC873058
Unique NameFC873058
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5800 contig Ccv1_Contig5800:72..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC873058 vs. ExPASy Swiss-Prot
Match: SGS3_SOLLC (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 68/200 (34.00%), Postives = 88/200 (44.00%), Query Frame = 3
Query:   78 MSARRGGKSPIAAGSSNTSVKGKNVTEVSNSQVDHLSGSVADISLDSAQDDGGWEVYVRKSKNKAGSGTTKSFGSQ--------NSNYKAWGHLDSTQKPGMRGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGSTIFKHSEDG--------------HDKESGNLD 611
            MS  + G  P     SN+S K K     S   V+ ++  V DI L+S Q++G WEVY RK KNK GS   K +  Q        N N KAWGH D  +K G R N  SGR     W+T +   K+      ARP L +         +   + P L++GW+W SR  S    H +D               HD E   LD
Sbjct:    1 MSFSKWGGKP-----SNSSEKQK---ASSTPTVEEINRGVGDIGLNSEQNEG-WEVYARKPKNKGGSSAGKQWAPQNPSPKAWGNQNTKAWGHPDVGKKSGTRNNAGSGRGSGNNWSTPSDPQKL------ARPHLYD-----GGFPSSAPVPPALKNGWDWSSRVASA---HPKDNSQVAAAADDDKASEHDAEDNELD 177          
BLAST of FC873058 vs. ExPASy Swiss-Prot
Match: SGS3_ARATH (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidopsis thaliana GN=SGS3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 54/144 (37.50%), Postives = 76/144 (52.78%), Query Frame = 3
Query:  138 KGKNVTEVSNSQVDHLSGSVADISLDSAQDDGG-WEVYVRKSKNKAGSGTTKSFGSQNSN-YKAWGHLDSTQKPGM--RGNGSSGRAPAKTWTTVNADSKIPAGRVNARPQLTNWVPETNNMATQTGIRPPLEHGWNWQSRAGS 557
            K KNV      +V+ L   +A   L S+QDDGG WEV  +K+KNK G+ + K++ SQNSN  +AWG     +   +  RGN  SGR         N + +     ++ R +  +   + N +A     RPPLE GWNWQ+R GS
Sbjct:   10 KEKNVQGGYRPEVEQLVQGLAGTRLASSQDDGGEWEVISKKNKNKPGNTSGKTWVSQNSNPPRAWGGQQQGRGSNVSGRGNNVSGRG--------NGNGRGIQANISGRGRALSRKYDNNFVAPPPVSRPPLEGGWNWQARGGS 145          
The following BLAST results are available for this feature:
BLAST of FC873058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SGS3_SOLLC1.947e-1834.00Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum ... [more]
SGS3_ARATH7.658e-1537.50Protein SUPPRESSOR OF GENE SILENCING 3 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI2CB06FM1 AbsDev Citrus clementina cDNA clone KN0AAI2CB06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873058 ID=FC873058; Name=FC873058; organism=Citrus clementina; type=EST; length=721bp
CACACTGTTTCCTTTTGCTCTCTCCACTCAGGTGAAGAGATCTTAGCTCG
GTAATCGAAGAGGATTTTTGCACTAAGATGAGTGCAAGAAGAGGTGGAAA
GTCTCCAATTGCTGCTGGCAGCAGCAACACTTCTGTGAAGGGGAAAAATG
TGACTGAAGTCTCCAATTCCCAGGTTGATCATTTGAGCGGATCTGTAGCA
GATATCAGCCTGGATTCGGCACAGGATGATGGTGGATGGGAGGTTTATGT
GAGGAAGTCAAAAAACAAAGCTGGCAGTGGGACTACCAAATCCTTTGGTT
CTCAGAATTCTAATTATAAGGCATGGGGACATCTGGATAGCACTCAGAAA
CCAGGAATGCGGGGTAATGGTAGCTCAGGGAGGGCTCCTGCCAAAACCTG
GACAACTGTAAATGCAGATTCTAAGATACCAGCTGGCAGAGTGAATGCAA
GACCCCAATTGACCAACTGGGTTCCTGAGACAAACAACATGGCCACACAA
ACAGGGATTCGCCCTCCTCTGGAGCATGGTTGGAATTGGCAATCTAGAGC
TGGTTCTACTATATTCAAACATTCAGAAGATGGCCATGATAAAGAGAGTG
GTAATCTTGACGAGGTCCACAAAGACAATGTTGAAGATGATTATGACGAT
GAGAAAGATGATGATTCTAATGTTTCAGATGATTCGGATGATGAGTTACT
GAGTGATGAGTTTGATTCTGA
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