FC873359
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: YOCS_BACSU (Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis GN=yocS PE=3 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 5.469e-39 Identity = 87/202 (43.07%), Postives = 117/202 (57.92%), Query Frame = 3 Query: 201 MSQYEKIIEILTTLFPVWVILGTIIGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVI 806 M KI F +WVI+ ++G PS TW+ + + TI LG +M MGLTL +DF+ +R PW V +G +AQY I P++ F +A L L A +A G+ILV CCPGG ASNV T+++KGN ALSV +TT ST+ A V+TPLL L A + +PV L IS Q + FF K +K + PL+ VI Sbjct: 1 MDIIRKISHFAGQTFGIWVIVFAVLGFSFPSLFTWISSYI-TIFLGIIMFGMGLTLQADDFKELVRKPWQVIIGVIAQYTIMPLVAFGLAFGLHLPAEIAVGVILVGCCPGGTASNVMTFLAKGNTALSVAVTTISTLLAPVVTPLLIMLFAKEWLPVSPGSLFISILQAVLFPIIAGLIVKMFFRKQVAKAVHALPLVSVI 201
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP2_RABIT (Ileal sodium/bile acid cotransporter OS=Oryctolagus cuniculus GN=SLC10A2 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.829e-18 Identity = 56/171 (32.75%), Postives = 87/171 (50.88%), Query Frame = 3 Query: 318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL----LTKLLAGQ---LVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVIL 809 + TI L +M SMG + + F +R PW + +GFL Q+ I P+ GFV+A+ + A ++++ CCPGG ASN+ Y G++ LSV MTTCST+ A+ M PL TK+ ++P D G ++ N +P+ I+ V + G +L Sbjct: 38 VLTILLALVMFSMGCNVEIKKFLGHIRRPWGIFIGFLCQFGIMPLTGFVLAVAFGIMPIQAVVVLIMGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLCLYVYTKMWVDSGTIVIPYDNIGTSLVAL---VVPVSIGMFVNHKWPQKAKIILKVGSIAGAVL 205
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP2_CRIGR (Ileal sodium/bile acid cotransporter OS=Cricetulus griseus GN=SLC10A2 PE=2 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.120e-18 Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = 3 Query: 318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL----LTKLLAGQ---LVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVIL 809 + TI L +M SMG + F LR PW + VGFL Q+ I P+ GFV+++ + A +++ CCPGG ASN+ Y G++ LSV MTTCST+ A+ M PL TK+ ++P D+ G ++ N +P+ I+ + + G IL Sbjct: 37 VLTILLALVMFSMGCNVELHKFLGHLRRPWGIVVGFLCQFGIMPLTGFVLSVAFGILPVQAVVVLIQGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLCLFIYTKMWVDSGTIVIPYDSIGTSLVAL---VIPVSIGMYVNHKWPQKAKIILKIGSIAGAIL 204
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP2_MOUSE (Ileal sodium/bile acid cotransporter OS=Mus musculus GN=Slc10a2 PE=2 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 5.322e-18 Identity = 54/171 (31.58%), Postives = 88/171 (51.46%), Query Frame = 3 Query: 318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL----LTKLLAGQ---LVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVIL 809 + TI L +M SMG + F ++ PW + VGFL Q+ I P+ GF++++ + A ++++ CCPGG SN+ Y G++ LSV MTTCST+ A+ M PL TK+ ++P D+ G+++ N +P+ I+ + + GVIL Sbjct: 37 VLTILLAMVMFSMGCNVEVHKFLGHIKRPWGIFVGFLCQFGIMPLTGFILSVASGILPVQAVVVLIMGCCPGGTGSNILAYWIDGDMDLSVSMTTCSTLLALGMMPLCLFVYTKMWVDSGTIVIPYDSIGISLVAL---VIPVSFGMFVNHKWPQKAKIILKIGSITGVIL 204
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP2_HUMAN (Ileal sodium/bile acid cotransporter OS=Homo sapiens GN=SLC10A2 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.322e-18 Identity = 54/171 (31.58%), Postives = 87/171 (50.88%), Query Frame = 3 Query: 318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL----LTKLLAGQ---LVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVIL 809 + TI L +M SMG + + F ++ PW + VGFL Q+ I P+ GF++++ + A ++++ CCPGG ASN+ Y G++ LSV MTTCST+ A+ M PL TK+ ++P D G ++ N +P+ I+ + + G IL Sbjct: 37 VLTILLALVMFSMGCNVEIKKFLGHIKRPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVAL---VVPVSIGMFVNHKWPQKAKIILKIGSIAGAIL 204
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: NTCP2_RAT (Ileal sodium/bile acid cotransporter OS=Rattus norvegicus GN=Slc10a2 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.186e-17 Identity = 53/171 (30.99%), Postives = 87/171 (50.88%), Query Frame = 3 Query: 318 LFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL----LTKLLAGQ---LVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVIL 809 + TI L +M SMG + F ++ PW + VGFL Q+ I P+ GF++++ + A ++++ CCPGG SN+ Y G++ LSV MTTCST+ A+ M PL TK+ ++P D+ G+++ N +P+ I+ + + G IL Sbjct: 37 VLTILLAMVMFSMGCNVEINKFLGHIKRPWGIFVGFLCQFGIMPLTGFILSVASGILPVQAVVVLIMGCCPGGTGSNILAYWIDGDMDLSVSMTTCSTLLALGMMPLCLFIYTKMWVDSGTIVIPYDSIGISLVAL---VIPVSIGMFVNHKWPQKAKIILKIGSIAGAIL 204
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: SOAT_HUMAN (Solute carrier family 10 member 6 OS=Homo sapiens GN=SLC10A6 PE=1 SV=2) HSP 1 Score: 87.4261 bits (215), Expect = 1.004e-16 Identity = 39/109 (35.78%), Postives = 65/109 (59.63%), Query Frame = 3 Query: 312 TDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL 638 T + T+ +G LM S+G ++ +R PW + VG L Q+ + P +++A++ L A ++++ CCPGG SN+ T+ G++ LS+ MTTCST+ A+ M PL Sbjct: 35 TVVSTVMMGLLMFSLGCSVEIRKLWSHIRRPWGIAVGLLCQFGLMPFTAYLLAISFSLKPVQAIAVLIMGCCPGGTISNIFTFWVDGDMDLSISMTTCSTVAALGMMPL 143
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: SOAT_BOVIN (Solute carrier family 10 member 6 OS=Bos taurus GN=SLC10A6 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 8.497e-16 Identity = 36/102 (35.29%), Postives = 63/102 (61.76%), Query Frame = 3 Query: 333 LGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL 638 +G LM S+G ++ + +R PW + VG L Q+ + P++ +++ ++ L A ++++ CCPGG SN+ T+ G++ LS+ MTTCST+ A+ M PL Sbjct: 42 IGLLMFSLGCSVEVQKLWGHIRRPWGIAVGMLCQFGLMPLIAYLLIISFSLKPLQAIAVLIMGCCPGGTVSNIFTFWVDGDMDLSISMTTCSTMAALGMMPL 143
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: SOAT_MOUSE (Solute carrier family 10 member 6 OS=Mus musculus GN=Slc10a6 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.229e-15 Identity = 52/186 (27.96%), Postives = 91/186 (48.92%), Query Frame = 3 Query: 273 IGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPLLT-------KLLAGQLVPVDAAGLAISTFQXXXXXXXXXXLANEFFPKFTSKIISVTPLIGVIL 809 +G+ + + L T L + +G +M S G ++ + LR PW + VG L+Q+ + P+ +++A+ L A ++++ CPGG SNV T+ G++ LS+ MTTCST+ A+ M PL L ++P + G+ T N +PK + I+ V ++G +L Sbjct: 22 VGMEGHANLKLLFTVLSAVMVGLVMFSFGCSVESQKLWLHLRRPWGIAVGLLSQFGLMPLTAYLLAIGFGLKPFQAIAVLMMGSCPGGTISNVLTFWVDGDMDLSISMTTCSTVAALGMMPLCLYIYTRSWTLTQNLVIPYQSIGI---TLVSLVVPVASGVYVNYRWPKQATVILKVGAILGGML 204
BLAST of FC873359 vs. ExPASy Swiss-Prot
Match: SOAT_RAT (Solute carrier family 10 member 6 OS=Rattus norvegicus GN=Slc10a6 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.602e-14 Identity = 40/122 (32.79%), Postives = 68/122 (55.74%), Query Frame = 3 Query: 273 IGIYKPSAVTWLETDLFTIGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYLIKPMLGFVIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIVMTPL 638 +G+ ++ + T L + +G +M S G ++ LR PW + VG L Q+ + P+ +++A+ L A ++++ CPGG SNV T+ G++ LS+ MTTCST+ A+ M PL Sbjct: 22 VGMEGQGSLKLVFTVLSAVMVGLVMFSFGCSVESRKLWLHLRRPWGIAVGLLCQFGLMPLTAYLLAIGFGLKPFQAIAVLIMGSCPGGTVSNVLTFWVDGDMDLSISMTTCSTVAALGMMPL 143 The following BLAST results are available for this feature:
BLAST of FC873359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC873359 ID=FC873359; Name=FC873359; organism=Citrus clementina; type=EST; length=809bpback to top |