FC873394

Overview
NameFC873394
Unique NameFC873394
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length518
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1212 contig Ccv1_Contig1212:79..596. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC873394 vs. ExPASy Swiss-Prot
Match: ATP5H_ARATH (ATP synthase subunit d, mitochondrial OS=Arabidopsis thaliana GN=At3g52300 PE=1 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 9.590e-59
Identity = 92/126 (73.02%), Postives = 105/126 (83.33%), Query Frame = 2 
Query:  128 AFDEVNSTLQTKFSQEPEPIDWEYYRKGIGSRLVDMYKQAYESIEVPKYVDKVTPEYKSKFDALLVELKKAXXXXXXXXXXXXXXIAEVQELKEKISTMTAEEYFEKHPELKKKFDDEIRNDYCGY 505
            AFDEVN+ LQTKFSQEPEPIDW+YYRKGIG+ +VD YK+AY+SIE+PKYVDKVTPEYK KFDALLVELK+A              IA+VQE+ +K+STMTA+EYFEKHPELKKKFDDEIRND  GY
Sbjct:   43 AFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVDKYKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKLSTMTADEYFEKHPELKKKFDDEIRNDNWGY 168

HSP 2 Score: 55.0694 bits (131), Expect = 9.590e-59
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:   19 KITDDAFKNKRTIYWKGMAKMLVSDEARKEFATLRRSF 132
            KI D AFK  RTI W GMAK+LV+DEAR+EF+ LRR+F
Sbjct:    7 KIADVAFKASRTIDWDGMAKVLVTDEARREFSNLRRAF 44
The following BLAST results are available for this feature:
BLAST of FC873394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ATP5H_ARATH9.590e-5973.02ATP synthase subunit d, mitochondrial OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAI3AF05FM1 AbsDev Citrus clementina cDNA clone KN0AAI3AF05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC873394 ID=FC873394; Name=FC873394; organism=Citrus clementina; type=EST; length=518bp
TCGAACGAAACTGACAACAAAATAACTGACGACGCATTCAAGAACAAAAG
GACCATATATTGGAAAGGGATGGCGAAAATGCTGGTCTCCGATGAGGCAC
GCAAGGAGTTCGCCACTCTCCGTCGCAGCTTTCGACGAAGTCAACTCCAC
TCTTCAAACCAAGTTCAGCCAGGAACCTGAACCTATTGACTGGGAGTATT
ACAGAAAAGGAATTGGCTCTCGCTTGGTGGACATGTACAAACAGGCTTAT
GAAAGCATAGAGGTCCCAAAGTATGTAGACAAAGTCACCCCTGAATACAA
ATCTAAGTTTGATGCTTTGCTGGTGGAATTGAAAAAAGCAGAAGGGAAAT
CTCTTAAGGAGTCCGAGCGTTTGGAGAAAGAAATAGCTGAGGTTCAAGAA
CTGAAGGAAAAGATCAGCACCATGACCGCTGAGGAATACTTTGAAAAGCA
TCCGGAGCTCAAAAAGAAGTTCGATGATGAAATCAGGAATGACTACTGCG
GCTATTGATCCCACATTT
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