FC876194
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNGC4_ARATH (Cyclic nucleotide-gated ion channel 4 OS=Arabidopsis thaliana GN=CNGC4 PE=2 SV=2) HSP 1 Score: 181.03 bits (458), Expect = 4.630e-45 Identity = 93/157 (59.24%), Postives = 110/157 (70.06%), Query Frame = 1 Query: 208 CGRRRRSN-----WSF-GQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPH-SRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIPAL 657 CG RR + W G++LDPR+KWV+EWN+VFLLVCATGLFVDPLF Y LS+S+TCMCL VDGW A+TVTALR MTDLLH+WN+W+Q K+ + D D G S VA Y+K K GFFFDLFVILPL Q+VLWVVIP+L Sbjct: 60 CGGRRNGSSNNNKWMMLGRILDPRSKWVREWNKVFLLVCATGLFVDPLFLYTLSVSDTCMCLLVDGWLALTVTALRSMTDLLHLWNIWIQFKIAR----RWPYPGGDSDGDTNKGGGTRGSTRVAPPYVK-KNGFFFDLFVILPLPQVVLWVVIPSL 211
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNGC2_ARATH (Cyclic nucleotide-gated ion channel 2 OS=Arabidopsis thaliana GN=CNGC2 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 3.686e-26 Identity = 65/150 (43.33%), Postives = 84/150 (56.00%), Query Frame = 1 Query: 214 RRRRSNWSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETC--MCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIPAL 657 R RR FG+VLDPR+K VQ WNR LL L VDPLFFYALSI T CL++DG FA VT LR D +H+W++WLQ ++ D R++A Y ++ GF+FD+ VILP+ Q V W+V+P L Sbjct: 102 RFRRLKGPFGEVLDPRSKRVQRWNRALLLARGMALAVDPLFFYALSIGRTTGPACLYMDGAFAAVVTVLRTCLDAVHLWHVWLQFRLAYVSRESLVVGCGKLVWD--------PRAIASHYARSLTGFWFDVIVILPVPQAVFWLVVPKL 243
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.458e-16 Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 1 Query: 247 VLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIPA 654 +++P AK VQ W + F L C +F+DPLFF+ + + E C+ +D A+R +TD++ N+ LQ ++ + H + +AL Y+K K FF DLF+++PL QI++ +IPA Sbjct: 192 IMNPHAKEVQTWTKFFALSCLLAIFIDPLFFFLIKVQEQNKCIMIDWPMTKAFVAVRSVTDVIFTMNILLQFRLAYVARESTVVGAG--------QLVSHPKKIALHYLKGK--FFLDLFIVMPLPQILILWIIPA 317
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.897e-14 Identity = 43/136 (31.62%), Postives = 70/136 (51.47%), Query Frame = 1 Query: 244 QVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIP 651 ++LDP+ ++Q WN++F+L C + +DPLFFY I + CL +D IT + LR TD+ +V ++ Q + EDK R +A RY+ + F D+ +LPL Q+V+ ++IP Sbjct: 83 KILDPQGPFLQRWNKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQFRTGFIAPSSRVFGRGVLVEDK--------REIAKRYLSSH--FIIDILAVLPLPQMVILIIIP 208
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNG16_ARATH (Probable cyclic nucleotide-gated ion channel 16 OS=Arabidopsis thaliana GN=CNGC16 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14 Identity = 51/162 (31.48%), Postives = 76/162 (46.91%), Query Frame = 1 Query: 175 NGRRRDMFSGICGRRRRSNWSFGQVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLK---MTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIP 651 N RRR +FS + + LDP + WN +FL+ C LF+DPL+FY + C+ +D F I VT R + DL + ++ L+ K ++K D R +A+RY+K++ F DL LPL QI++W VIP Sbjct: 30 NQRRRSIFSKLRDK----------TLDPGGDLITRWNHIFLITCLLALFLDPLYFYLPIVQAGTACMSIDVRFGIFVTCFRNLADLSFLIHILLKFKTAFVSKSSRVFGRGELVMD-----------RREIAIRYLKSE--FVIDLAATLPLPQIMIWFVIP 168
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNG18_ARATH (Putative cyclic nucleotide-gated ion channel 18 OS=Arabidopsis thaliana GN=CNGC18 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.606e-13 Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 1 Query: 244 QVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIPA 654 Q+LDP + V WN VFL+ LF+DP +FY + CL +D A TVT R + D+ H+ +++++ + R SR +A+RY+K F D+ +LPL Q+V+W+VIPA Sbjct: 39 QILDPDSNIVTYWNHVFLITSILALFLDPFYFYVPYVGGPA-CLSIDISLAATVTFFRTVADIFHLLHIFMKFRTAFVARSSRVFG--------RGELVMDSREIAMRYLKT--DFLIDVAAMLPLPQLVIWLVIPA 164
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13 Identity = 39/138 (28.26%), Postives = 69/138 (50.00%), Query Frame = 1 Query: 244 QVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIPAL 657 ++LDPR + ++ WN++FL+ C LFVDPLFF+ L + C+ + + +T +R + D ++ + ++ + R SR +A RY+ K F+ L LPL Q+++W++IP L Sbjct: 67 KILDPRGQTIRRWNKIFLIACLVSLFVDPLFFF-LPVMRNEACITIGVRLEVVLTLIRSLADAFYIAQILIRFRTAYIAPPSRVFG--------RGELVIDSRKIAWRYL--HKSFWIHLVAALPLPQVLIWIIIPNL 193
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNG19_ARATH (Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.167e-12 Identity = 40/138 (28.99%), Postives = 69/138 (50.00%), Query Frame = 1 Query: 247 VLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSG---PHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIP 651 +++P +K+VQ W RV +F+DPLFF+ L I + C+ +D + +LR +TDL+ N+ LQ ++ E + +G H R +A Y + K F D+F++ P+ QI++ +IP Sbjct: 158 IMNPHSKFVQVWTRVLAFSSLVAIFIDPLFFFLLLIQQDNKCIAIDWRATKVLVSLRSITDLIFFINILLQFRLA-----------YVAPESRIVGAGQLVDHPRKIARHYFRGK--FLLDMFIVFPIPQIMILRIIP 282
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNG10_ARATH (Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12 Identity = 39/137 (28.47%), Postives = 68/137 (49.64%), Query Frame = 1 Query: 247 VLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISETCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIPAL 657 +++P+ ++Q WN++FL C L +DPLFFY + CL +D I + LR + D ++ ++ Q + +D ++++AL+Y+ + F DL ILPL QIV+ VIP++ Sbjct: 68 IINPQDSFLQNWNKIFLFACVVALAIDPLFFYIPIVDSARHCLTLDSKLEIAASLLRTLIDAFYIIHIVFQFRTAYIAPSSRVFGRGELVDD--------AKAIALKYLSSY--FIIDLLSILPLPQIVVLAVIPSV 194
BLAST of FC876194 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11 Identity = 44/140 (31.43%), Postives = 67/140 (47.86%), Query Frame = 1 Query: 244 QVLDPRAKWVQEWNRVFLLVCATGLFVDPLFFYALSISE--TCMCLFVDGWFAITVTALRCMTDLLHVWNMWLQLKMTKXXXXXXXXXXXXDDEDKRPRSGPHSRSVALRYMKAKKGFFFDLFVILPLRQIVLWVVIPAL 657 ++LDP V +WNRVFL C L+VDPLFF+ S+ C+ D I +T R + DL +V + + +K + K P + +A RY+++ F DL LPL QIV W ++P++ Sbjct: 71 KILDPGGDAVLQWNRVFLFWCLVALYVDPLFFFLSSVKRIGRSSCMTTDLKLGIVITFFRTLADLFYV--LHIVIKFRTAYVSRTSRVFGRGELVKDP------KLIARRYLRS--DFIVDLIACLPLPQIVSWFILPSI 200 The following BLAST results are available for this feature:
BLAST of FC876194 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC876194 ID=FC876194; Name=FC876194; organism=Citrus clementina; type=EST; length=657bpback to top |