FC876750

Overview
NameFC876750
Unique NameFC876750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length728
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10416 contig Ccv1_Contig10416:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG20_ARATH (Probable cyclic nucleotide-gated ion channel 20, chloroplastic OS=Arabidopsis thaliana GN=CNGC20 PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 1.495e-90
Identity = 162/239 (67.78%), Postives = 190/239 (79.50%), Query Frame = 1
Query:   10 ILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726
            IL ++P  LG+SGANYAKNLLRAA+L QYIP+LY+ LP  AGQ+ TGFIFESAWANF INL TF L+GH+VGS WYLFGLQRVNQCLR+AC N   ++C+  +DCG+GN     S      +W  N  A+ CF++D F YGIY +AV LT  +++ TRY YSLFWGFQQISTLAGNQ PSYF+GEV FTM IIG+GLLLFA LIGNMQNFLQAL KR L+M+LRRRDVEQWM HRRLP+
Sbjct:  311 ILWIIPAHLGASGANYAKNLLRAAVLFQYIPKLYRLLPFLAGQTPTGFIFESAWANFVINLLTFMLAGHVVGSCWYLFGLQRVNQCLRNACGNFG-RECQDLIDCGNGN-----SSVLVRATWKDNASANACFQEDGFPYGIYLKAVNLTNHSNLFTRYSYSLFWGFQQISTLAGNQVPSYFLGEVFFTMGIIGLGLLLFALLIGNMQNFLQALGKRNLEMTLRRRDVEQWMSHRRLPD 543          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG19_ARATH (Putative cyclic nucleotide-gated ion channel 19 OS=Arabidopsis thaliana GN=CNGC19 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 1.150e-74
Identity = 139/239 (58.16%), Postives = 175/239 (73.22%), Query Frame = 1
Query:   10 ILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVKLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726
            IL ++P  LG+      K +LRA +L QYIP+LY+ LPL AGQ+STGFIFESAWANF INL TF L+GH VGS WYL  LQRV +C+ +A  N S  + +  +DC  G+  ++  +D     W  N   + CF+++ ++YGIY +AV LT E+S  TR+ YSL+WGFQQISTLAGN +PSY VGEV FTM IIG+GLLLFA LIGNM NFLQ+L +RR++M LR+RDVEQWM HRRLPE
Sbjct:  277 ILRIIPLHLGTRREESEKQILRATVLFQYIPKLYRLLPLLAGQTSTGFIFESAWANFVINLLTFMLAGHAVGSCWYLSALQRVKKCMLNAW-NISADERRNLIDCARGSYASKSQRDL----WRDNASVNACFQENGYTYGIYLKAVNLTNESSFFTRFSYSLYWGFQQISTLAGNLSPSYSVGEVFFTMGIIGLGLLLFARLIGNMHNFLQSLDRRRMEMMLRKRDVEQWMSHRRLPE 510          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG15_ARATH (Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.087e-40
Identity = 95/242 (39.26%), Postives = 137/242 (56.61%), Query Frame = 1
Query:   10 ILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQ-SSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCK-KFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKF-SYGIYEQAVKLT-TENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLP 723
            I +++PN+ GS   N  KN+LR  I+ QY+PR++   PL      +TG + E+AWA    NL  + L+ H++G+ WYL  ++R   C R AC N   Q C+ +F +C       E  Q  +W  WS     + C    KF  +GI+  AV  T T +  I +Y Y L+WG + +S+L  N   S + GE+LF + I  +GL+LFA LIGNMQ +LQ+   R  +  +RR D EQWM HR+LP
Sbjct:  186 IWIIIPNLRGSPMTN-TKNVLRFIIIFQYVPRMFLIFPLSRQIIKATGVVTETAWAGAAYNLMLYMLASHVLGACWYLLAVERQEACWRHAC-NIEKQICQYRFFECRR----LEDPQRNSWFEWSNI--TTICKPASKFYEFGIFGDAVTSTVTSSKFINKYFYCLWWGLKNLSSLGQNLATSTYAGEILFAIIIATLGLVLFALLIGNMQTYLQSTTMRLEEWRIRRTDTEQWMHHRQLP 419          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNGC9_ARATH (Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.017e-38
Identity = 92/237 (38.82%), Postives = 132/237 (55.70%), Query Frame = 1
Query:   40 SSGANY--AKNLLRAAILLQYIPRLYKFLPLFAGQSSTGFIF-ESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDC----FEKDKFSYGIYEQAVK--LTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLP 723
            S GA+    K  LR+ IL+QYIPR  +  PL +    T  +F E+AWA     L  + L+ HIVG+ WYL  L+R N C    C NSS+   + FL CG+     +      W +   +    +C     +   F +GIY +A+   + +  S +++Y + L+WG Q +STL      S + GEV+F++A+   GLLLFA LIGNMQ +LQ+L  R  +M ++RRD EQWM HR LP
Sbjct:  229 SKGASVLATKRALRSIILVQYIPRFIRLYPLSSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAIWYLLALERYNGCWTKVCSNSSLDCHRNFLFCGN----EKMDGYAAWTTIKDSVLQLNCPVNTTDNPPFDFGIYLRALSSGIVSSKSFVSKYFFCLWWGLQNLSTLGQGLETSTYPGEVIFSIALAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLP 461          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNGC6_ARATH (Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.328e-38
Identity = 94/236 (39.83%), Postives = 136/236 (57.63%), Query Frame = 1
Query:   40 SSGANY--AKNLLRAAILLQYIPRLYKFLPLFAGQSSTGFIF-ESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDC-KKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDK--FSYGIYEQAVK--LTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLP 723
            S GAN    K  LR  +L+QYIPR  +  PL +    T  +F E+AWA     L  + L+ HIVG+ WYL  L+R N C   ACHN+  Q+C + FL CG+ N     + D    S+   +   +  E ++  F +GIY +A+   + +  + +++Y + L+WG Q +STL      S + GEV+F++ +   GLLLFA LIGNMQ +LQ+L  R  +M ++RRD EQWM HR LP
Sbjct:  229 SRGANVLATKQALRYIVLVQYIPRFLRMYPLSSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGALWYLLALERNNDCWSKACHNN--QNCTRNFLFCGNQNMKGYAAWDNIKVSYLQLKCPVNVPEDEEPPFDFGIYLRALSSGIVSSKNFVSKYFFCLWWGLQNLSTLGQGLETSTYPGEVIFSITLAIAGLLLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLP 462          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNGC8_ARATH (Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.865e-38
Identity = 93/239 (38.91%), Postives = 131/239 (54.81%), Query Frame = 1
Query:   37 GSSGANY--AKNLLRAAILLQYIPRLYKFLPLFAGQSSTGFIF-ESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACH-NSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKD---KFSYGIYEQAVK--LTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726
            GS G +    K  L   ++ QYIPR  +F+PL +    T   F E AWA     L  + L+ HI G+ WY+  ++R + CLR AC      + C + L CG        S++  W     +   ++C  K    KF+YGIY QAV   + +  +  +++ Y L+WG Q +STL      S + GEVLF++AI   GLLLFA LIGNMQ +LQ+L  R  +M ++RRD EQWM HR LP+
Sbjct:  222 GSKGTDVLPTKQALLHIVITQYIPRFVRFIPLTSELKKTAGAFAEGAWAGAAYYLLWYMLASHITGAFWYMLSVERNDTCLRSACKVQPDPKVCVQILYCG---SKLMSSRETDWIKSVPDLFKNNCSAKSDESKFNYGIYSQAVSSGIVSSTTFFSKFCYCLWWGLQNLSTLGQGLQTSTYPGEVLFSIAIAVAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQ 457          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNGC1_ARATH (Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.469e-37
Identity = 84/242 (34.71%), Postives = 131/242 (54.13%), Query Frame = 1
Query:   10 ILLVLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQSST-GFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAVK--LTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726
            IL+++P++ GSS  N  KN+L+  +  QYIPR  +  PL+   + T G + E+AWA    NLF + L+ H+ G+ WYLF ++R   C + AC  ++     K L C     G     +++    + N           F +GI+  A++  +        ++ Y  +WG Q +S+L  N   S ++ E+ F + I   GL+LF+FLIGNMQ +LQ+   R  +M ++RRD EQWM HR LPE
Sbjct:  203 ILIIIPHMRGSSSLN-TKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCPIQTPNTTL--------FDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVFISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPE 435          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNGC7_ARATH (Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.581e-37
Identity = 93/239 (38.91%), Postives = 130/239 (54.39%), Query Frame = 1
Query:   37 GSSGANY--AKNLLRAAILLQYIPRLYKFLPLFAGQSSTGFIF-ESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACH-NSSIQDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEK---DKFSYGIYEQAVK--LTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726
            GS G++    K  L   +++QYIPR  +F+PL +    T   F E AWA     L  + L+ HI G+ WY+  ++R + C R AC      + C + L CG        S +  W         S+C  K    KF+YGIY QA+   + +  +  +++ Y L+WG Q +STL      S F GEVLF++AI   GLLLFA LIGNMQ +LQ+L  R  +M ++RRD EQWM HR LP+
Sbjct:  216 GSKGSDVLPTKTALLNIVIVQYIPRFVRFIPLTSELKKTAGAFAEGAWAGAAYYLLWYMLASHITGAFWYMLSVERNDTCWRFACKVQPDPRLCVQILYCGTKFVS---SGETEWIKTVPELLKSNCSAKADDSKFNYGIYGQAISSGIVSSTTFFSKFCYCLWWGLQNLSTLGQGLQTSTFPGEVLFSIAIAIAGLLLFALLIGNMQTYLQSLTVRLEEMRIKRRDSEQWMHHRSLPQ 451          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG17_ARATH (Probable cyclic nucleotide-gated ion channel 17 OS=Arabidopsis thaliana GN=CNGC17 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.519e-37
Identity = 84/230 (36.52%), Postives = 131/230 (56.96%), Query Frame = 1
Query:   52 NYAKNLLRAAILLQYIPRLYKFLPLFAG-QSSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSIQ-DCKKF-LDCGHGNGGAEYSQDQ-TWKSWSGNQQASDCFEKDKFSYGIYEQAV-KLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726
            ++  N +   +LLQYIPR Y  +PL +    +TG + ++AWA    NL  + L+ H++G+ WY+  + R   C +  C+  + Q +C+ + LDC      + Y  +Q TW + +   +  D     +F YGI+  A+ K    +    RY Y L+WG QQ+S+   N + + F+GE  F + I   GL+LFA LIGNMQ +LQ+L  R  +  L++RD E+WMRHR+LPE
Sbjct:  207 DHNNNAIALIVLLQYIPRFYLIIPLSSQIVKATGVVTKTAWAGAAYNLLLYMLASHVLGAAWYILSVDRYTSCWKSRCNGEAGQVNCQLYYLDCD-----SMYDNNQMTWANVTKVFKLCDA-RNGEFKYGIFGNAITKNVVSSQFFERYFYCLWWGLQQLSSYGQNLSTTMFMGETTFAVLIAIFGLVLFAHLIGNMQTYLQSLTVRLEEWRLKKRDTEEWMRHRQLPE 430          
BLAST of FC876750 vs. ExPASy Swiss-Prot
Match: CNG14_ARATH (Probable cyclic nucleotide-gated ion channel 14 OS=Arabidopsis thaliana GN=CNGC14 PE=2 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 3.062e-35
Identity = 86/240 (35.83%), Postives = 131/240 (54.58%), Query Frame = 1
Query:   19 VLPNILGSSGANYAKNLLRAAILLQYIPRLYKFLPLFAGQ-SSTGFIFESAWANFFINLFTFTLSGHIVGSGWYLFGLQRVNQCLRDACHNSSI--QDCKKFLDCGHGNGGAEYSQDQTWKSWSGNQQASDCFEKDKFSYGIYEQAV-KLTTENSIITRYVYSLFWGFQQISTLAGNQTPSYFVGEVLFTMAIIGVGLLLFAFLIGNMQNFLQALVKRRLDMSLRRRDVEQWMRHRRLPE 726
            +LP+I  SS +++  N L   +L+QYIPRLY   PL A    +TG +  +AWA    NL  + L+ HI+GS WYL  ++R   C +  CH  S+  Q    F DCG             W++ +      D     +F++GI+  A+ K    +  + +Y+Y L++G Q +S+   N + S  V E +F + +   GL+LFA LIGNMQ +LQ++  R  +  L+RRD E+WM HR LP+
Sbjct:  196 ILPSIR-SSHSDHTTNALVLIVLVQYIPRLYLIFPLSAEIIKATGVVTTTAWAGAAYNLLQYMLASHILGSAWYLLSIERQATCWKAECHKESVPLQCVTDFFDCGT----LHRDDRNNWQNTTVVFSNCDPSNNIQFTFGIFADALTKNVVSSPFLEKYLYCLWFGLQNLSSYGQNLSTSTSVLETMFAILVAIFGLVLFALLIGNMQTYLQSITVRLEEWRLKRRDTEEWMGHRLLPQ 430          
The following BLAST results are available for this feature:
BLAST of FC876750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
CNG20_ARATH1.495e-9067.78Probable cyclic nucleotide-gated ion channel 20, c... [more]
CNG19_ARATH1.150e-7458.16Putative cyclic nucleotide-gated ion channel 19 OS... [more]
CNG15_ARATH1.087e-4039.26Putative cyclic nucleotide-gated ion channel 15 OS... [more]
CNGC9_ARATH1.017e-3838.82Putative cyclic nucleotide-gated ion channel 9 OS=... [more]
CNGC6_ARATH1.328e-3839.83Probable cyclic nucleotide-gated ion channel 6 OS=... [more]
CNGC8_ARATH3.865e-3838.91Putative cyclic nucleotide-gated ion channel 8 OS=... [more]
CNGC1_ARATH1.469e-3734.71Cyclic nucleotide-gated ion channel 1 OS=Arabidops... [more]
CNGC7_ARATH5.581e-3738.91Putative cyclic nucleotide-gated ion channel 7 OS=... [more]
CNG17_ARATH9.519e-3736.52Probable cyclic nucleotide-gated ion channel 17 OS... [more]
CNG14_ARATH3.062e-3535.83Probable cyclic nucleotide-gated ion channel 14 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAN3AD11RM1 EHR Citrus clementina cDNA clone KN0AAN3AD11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876750 ID=FC876750; Name=FC876750; organism=Citrus clementina; type=EST; length=728bp
GGCACGAGGATCTTGTTAGTACTACCCAATATCTTGGGATCATCTGGCGC
AAATTATGCCAAAAATCTCTTACGTGCTGCTATTCTTCTTCAGTACATTC
CCAGGCTGTATAAGTTTCTACCCCTATTTGCCGGTCAGTCATCGACTGGC
TTCATATTTGAGTCTGCATGGGCAAATTTTTTTATTAATCTTTTCACCTT
CACATTATCTGGTCACATTGTTGGGTCAGGCTGGTACCTCTTCGGGTTAC
AGAGGGTTAATCAATGTCTTCGAGATGCCTGCCACAATTCTTCAATCCAA
GATTGCAAAAAATTCTTAGATTGTGGCCATGGGAATGGTGGTGCAGAATA
TAGTCAAGATCAAACATGGAAGAGCTGGAGTGGCAATCAACAAGCTAGTG
ATTGTTTTGAGAAGGATAAATTTTCTTATGGAATTTATGAACAAGCTGTC
AAACTTACTACAGAAAATAGTATCATCACCAGATATGTGTATTCACTGTT
TTGGGGATTCCAGCAAATCAGTACTCTTGCGGGAAATCAAACCCCCAGCT
ATTTTGTTGGGGAAGTCCTTTTTACCATGGCCATCATTGGAGTAGGCCTC
TTGCTCTTTGCTTTTCTCATTGGAAATATGCAGAACTTTCTCCAGGCTCT
TGTAAAGAGGAGGTTGGATATGTCATTAAGACGTCGTGATGTGGAGCAAT
GGATGAGACATCGACGCTTGCCTGAACA
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