FC877027

Overview
NameFC877027
Unique NameFC877027
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
EHRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10406 contig Ccv1_Contig10406:1..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877027 vs. ExPASy Swiss-Prot
Match: TRAD1_MACFA (TRAF-type zinc finger domain-containing protein 1 OS=Macaca fascicularis GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.027e-18
Identity = 33/101 (32.67%), Postives = 54/101 (53.47%), Query Frame = 3
Query:  276 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQ 578
            D+ T++C +C + IP  N  +H  HC RN+  C +C +  P+   E H    H  V C +C++ +E+ +L  H+   CP R+  C  C+  L  + L EH+
Sbjct:    7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPICKEPFPKSDMETHMAAEHCQVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHE 106          

HSP 2 Score: 29.261 bits (64), Expect = 3.027e-18
Identity = 11/29 (37.93%), Postives = 16/29 (55.17%), Query Frame = 1
Query:  661 EVCGNRTELCHLCNRYIRLRERYNHESRC 747
            + CG RTELC  C R + +++   H   C
Sbjct:  107 DYCGARTELCGNCGRNVLVKDLKTHPEVC 135          
BLAST of FC877027 vs. ExPASy Swiss-Prot
Match: TRAD1_HUMAN (TRAF-type zinc finger domain-containing protein 1 OS=Homo sapiens GN=TRAFD1 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 6.652e-18
Identity = 33/101 (32.67%), Postives = 53/101 (52.48%), Query Frame = 3
Query:  276 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQ 578
            D+ T++C +C + IP  N  +H  HC RN+  C  C +  P+   E H    H  V C +C++ +E+ +L  H+   CP R+  C  C+  L  + L EH+
Sbjct:    7 DQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTC-KCNKKLEKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHE 106          

HSP 2 Score: 29.261 bits (64), Expect = 6.652e-18
Identity = 11/29 (37.93%), Postives = 16/29 (55.17%), Query Frame = 1
Query:  661 EVCGNRTELCHLCNRYIRLRERYNHESRC 747
            + CG RTELC  C R + +++   H   C
Sbjct:  107 DYCGARTELCGNCGRNVLVKDLKTHPEVC 135          
BLAST of FC877027 vs. ExPASy Swiss-Prot
Match: TRAD1_RAT (TRAF-type zinc finger domain-containing protein 1 OS=Rattus norvegicus GN=Trafd1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 6.654e-18
Identity = 33/101 (32.67%), Postives = 51/101 (50.50%), Query Frame = 3
Query:  276 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQ 578
            D+  ++C +C + IP  N  +H  HC RN+  C VC +  P+   + H    H  V C +C++ +E+  L  H    CP R+  C  C+  L  V L EH+
Sbjct:    7 DQAARLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHVATEHCQVTC-KCNKKLEKRQLKQHVETECPLRLAVCQHCDLELSVVKLKEHE 106          

HSP 2 Score: 33.113 bits (74), Expect = 6.654e-18
Identity = 14/34 (41.18%), Postives = 19/34 (55.88%), Query Frame = 1
Query:  661 EVCGNRTELCHLCNRYIRLRERYNHESRCTGVPE 762
            + CG RTELC  C R + ++E   H + C  V E
Sbjct:  107 DYCGARTELCGSCGRNVLVKELQTHPAVCGRVEE 140          
BLAST of FC877027 vs. ExPASy Swiss-Prot
Match: TRAD1_MOUSE (TRAF-type zinc finger domain-containing protein 1 OS=Mus musculus GN=Trafd1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.650e-18
Identity = 33/101 (32.67%), Postives = 52/101 (51.49%), Query Frame = 3
Query:  276 DETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQ 578
            D+ +++C +C + IP  N  +H  HC RN+  C VC +  P+   + H    H  V C +C++ +E+  L  H    CP R+  C  C+  L  V L EH+
Sbjct:    7 DQASRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKSDMDIHMAAEHCQVTC-KCNKKLEKRQLKQHAETECPLRLAVCQHCDLELSVVKLKEHE 106          

HSP 2 Score: 32.3426 bits (72), Expect = 8.650e-18
Identity = 14/34 (41.18%), Postives = 18/34 (52.94%), Query Frame = 1
Query:  661 EVCGNRTELCHLCNRYIRLRERYNHESRCTGVPE 762
            + CG RTELC  C R + ++E   H   C  V E
Sbjct:  107 DYCGARTELCGSCGRNVLVKELKTHPEVCGRVEE 140          
BLAST of FC877027 vs. ExPASy Swiss-Prot
Match: TRAD1_BOVIN (TRAF-type zinc finger domain-containing protein 1 OS=Bos taurus GN=TRAFD1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.901e-17
Identity = 33/102 (32.35%), Postives = 54/102 (52.94%), Query Frame = 3
Query:  273 SDETTKICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQ 578
            +D+ T++C +C + IP  N  +H  HC RN+  C VC +  P+   E H    H  V C +C++ +E+  L  H+   CP R+  C  C+  L  + L +H+
Sbjct:    6 NDQDTRLCDNCKKEIPVFNFTIHEIHCQRNIGVCPVCKEPFPKCDMETHMATEHCQVTC-KCNKKLEKRQLKKHEETECPLRLALCQHCDLELSVLKLKDHE 106          

HSP 2 Score: 30.0314 bits (66), Expect = 1.901e-17
Identity = 11/29 (37.93%), Postives = 16/29 (55.17%), Query Frame = 1
Query:  661 EVCGNRTELCHLCNRYIRLRERYNHESRC 747
            + CG RTELC  C R + +++   H   C
Sbjct:  107 DYCGARTELCGTCGRNVLVKDLKTHPEVC 135          
BLAST of FC877027 vs. ExPASy Swiss-Prot
Match: XAF1_HUMAN (XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.516e-17
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 3
Query:  291 ICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFPLPAVDLAEHQ 578
            +C +C R + S+N  LH A+C R L  C  C + VP++  EEH    H  V C+ C ++M++  L  HK   C +R V C FC+  +    L  H+
Sbjct:    7 VCRNCKRHVVSANFTLHEAYCLRFLVLCPECEEPVPKETMEEHCKLEHQQVGCTMCQQSMQKSSLEFHKANECQERPVECKFCKLDMQLSKLELHE 102          

HSP 2 Score: 30.0314 bits (66), Expect = 5.516e-17
Identity = 12/27 (44.44%), Postives = 15/27 (55.56%), Query Frame = 1
Query:  667 CGNRTELCHLCNRYIRLRERYNHESRC 747
            CG+RTELC  C ++I  R    H   C
Sbjct:  105 CGSRTELCQGCGQFIMHRMLAQHRDVC 131          
BLAST of FC877027 vs. ExPASy Swiss-Prot
Match: XAF1_BOVIN (XIAP-associated factor 1 OS=Bos taurus GN=XAF1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.668e-15
Identity = 34/98 (34.69%), Postives = 52/98 (53.06%), Query Frame = 3
Query:  288 KICSHCDRAIPSSNIDLHFAHCSRNLERCKVCGDMVPRKYAEEHFLNTHAPVACSQCSETMEREILAIHKGENCPQRIVTCDFCEFP--LPAVDLAEH 575
            ++C +C R + S+++ LH AHC   L  C  C + V +   EEH    H  V C+ C +++ +  L  H+ + C +R V C FC+    L  VDL EH
Sbjct:    6 QVCRNCKRRVASNHLGLHEAHCLMYLVLCPECKEPVLQHEMEEHCQGGHQQVGCAMCQQSVPKHSLDSHEAQECQERPVECQFCQLAVRLNKVDLHEH 103          

HSP 2 Score: 30.4166 bits (67), Expect = 1.668e-15
Identity = 11/27 (40.74%), Postives = 15/27 (55.56%), Query Frame = 1
Query:  667 CGNRTELCHLCNRYIRLRERYNHESRC 747
            CG +TELC  C +++ LR    H   C
Sbjct:  105 CGQQTELCPDCGQHVMLRVLARHREEC 131          
The following BLAST results are available for this feature:
BLAST of FC877027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TRAD1_MACFA3.027e-1832.67TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_HUMAN6.652e-1832.67TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_RAT6.654e-1832.67TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_MOUSE8.650e-1832.67TRAF-type zinc finger domain-containing protein 1 ... [more]
TRAD1_BOVIN1.901e-1732.35TRAF-type zinc finger domain-containing protein 1 ... [more]
XAF1_HUMAN5.516e-1735.42XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 P... [more]
XAF1_BOVIN1.668e-1534.69XIAP-associated factor 1 OS=Bos taurus GN=XAF1 PE=... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAN3CE09RM1 EHR Citrus clementina cDNA clone KN0AAN3CE09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877027 ID=FC877027; Name=FC877027; organism=Citrus clementina; type=EST; length=858bp
GCACGAGGAACCAAAGTAATCAAAATCTCCTCATTCCTCAGACACGAAGC
CTCCCTTCCCAATTTTTTTTTTTAAAAAAAAAAAAAAAAACTTGTTTTAT
TTCTTATTTTATTCTCCCCCTAATTTTCTGAGAAATCCATAAAACAGCAT
CTAGCGAGAACAAGACTGCGACATCACACAAACTTCTTCTCTCTCTACCT
AAAAAGTCTTTATTTCGATTGCAGAGCTACGACGTCGTCGTATTGATTGA
TCGTATCGCGATGGCAATGACTTCTGATGAAACCACAAAAATATGCAGTC
ACTGTGACAGAGCTATACCGTCTTCAAATATTGATTTGCATTTTGCACAT
TGCTCGCGGAATCTGGAACGATGTAAAGTATGTGGTGACATGGTTCCAAG
GAAATATGCTGAGGAGCACTTCTTAAATACCCATGCCCCGGTGGCCTGTT
CACAGTGCAGCGAGACAATGGAGCGTGAAATTTTAGCCATCCATAAAGGT
GAAAATTGCCCGCAAAGGATTGTCACTTGCGACTTTTGTGAGTTTCCACT
GCCTGCAGTTGATCTGGCCGAGCATCAGGTGGCAATCGTCAATAATTTTG
AAAATGGAAAGACAATATCTTCCTACTTGGGTGTGATGCTTTGTTGCTTT
GTTATTGTAGGAAGTCTGTGGGAATCGCACAGAACTTTGTCATCTGTGTA
ACAGATATATTAGGTTGCGAGAAAGATATAACCATGAAAGTAGGTGCACA
GGTGTCCCAGAAACACTGTTGGATCTTCCAGGAATGTAAGGGCAGCTGAA
AGTGACCAAGGGGCTCACAGAAGGCCGGCACCCCCGCCGCCAAACGAGTT
TAATGGGA
back to top