FC877965

Overview
NameFC877965
Unique NameFC877965
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length617
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13906 contig Ccv1_Contig13906:204..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSNA_ARATH (Presenilin-like protein At1g08700 OS=Arabidopsis thaliana GN=At1g08700 PE=2 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 9.664e-63
Identity = 119/182 (65.38%), Postives = 140/182 (76.92%), Query Frame = 1
Query:   58 SLSGASDP-FRTAANLVYLERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDEE 600
            SLS  SDP  R+AANL+Y+E P DS+T KLEG++ NA+VFV+LIA VTF+LVLL+YYNFTNFLK+Y+RFSAFFVLGTMGG            PVD+ TCF+LLFNFTI+G LS+F+GGIPI+LRQ YMV MGI++AAWFTKLPEWTTW                PGGPLKLLVELAS+ DEE
Sbjct:   33 SLSVTSDPQIRSAANLIYIENPSDSTTVKLEGSLANAIVFVVLIAAVTFILVLLFYYNFTNFLKHYMRFSAFFVLGTMGGAIFLSIIQHFSIPVDSITCFILLFNFTILGTLSVFAGGIPIVLRQCYMVVMGIVVAAWFTKLPEWTTWFILVALALYDLVAVLAPGGPLKLLVELASSRDEE 214          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSNB_ARATH (Presenilin-like protein At2g29900 OS=Arabidopsis thaliana GN=At2g29900 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.007e-35
Identity = 77/179 (43.02%), Postives = 105/179 (58.66%), Query Frame = 1
Query:   64 SGASDPFRTAANLVYLERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDEE 600
            S +S  F + A   Y E   DSS  K  GA+LN++VFV  I + TF+LVLL+Y     FLK Y+ FSAF VLG +GG            P+D+ T  +LLFNF++VGV ++F     IL+ Q Y+V +G+++A +FT LPEWTTW                P GPL+LLVE+A + DE+
Sbjct:   44 SSSSASFSSIATAAYSESDSDSSWDKFVGALLNSVVFVAAITVATFVLVLLFYLRCVKFLKFYMGFSAFIVLGNLGGEILVLLIDRFRFPIDSITFLILLFNFSVVGVFAVFMSKFSILITQGYLVWIGVLVAYFFTLLPEWTTWVLLVALALYDIAAVLLPVGPLRLLVEMAISRDED 222          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSNA_DICDI (Presenilin-A OS=Dictyostelium discoideum GN=psenA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.755e-17
Identity = 43/149 (28.86%), Postives = 82/149 (55.03%), Query Frame = 1
Query:  151 AVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTKLPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            +V+N+L+F+ +I + T ++V+LY +     L  ++  ++  +LG  GG             +D  T  ++++NF++ G++ +F    P LL Q Y++ + ++MA +F++LP+WTTW                PGGPL++L+E A   +E
Sbjct:  227 SVVNSLIFLAVIILSTTIMVVLYKFKLMKALYAWLMGTSILLLGVFGGFLFLILLAYLNLGLDYVTFVIVVWNFSVGGIVCIFWYS-PKLLNQGYLISISVLMALFFSRLPDWTTWGILSIVSIYDIFAVLCPGGPLRILIETAQKRNE 374          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_XENLA (Presenilin-1 OS=Xenopus laevis GN=psen1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.333e-16
Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            R    L+Y    +D+ +  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  VD  T  +L++NF +VG++ +   G P+LL+QAY++ +  +MA  F K LPEWTTW                P GPL++LVE A   +E
Sbjct:   74 RFDGQLIYTPFTEDTESVGQRALNSILNATIMISVIIVMTILLVVLYKYRCYKVIHGWLIISSLLLLFFFSYIYLGEVFKTYNVAVDYITLALLIWNFGVVGMICIHWKG-PLLLQQAYLIMISALMALVFIKYLPEWTTWLILAVISVYDLVAVLSPKGPLRMLVETAQERNE 246          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_MICMU (Presenilin-1 OS=Microcebus murinus GN=PSEN1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.196e-16
Identity = 54/174 (31.03%), Postives = 86/174 (49.43%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            R    L+Y    +D+ T  Q+   +VLNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  VD  T  +L++NF +VG++S+   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A   +E
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSVLNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE 280          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_PONAB (Presenilin-1 OS=Pongo abelii GN=PSEN1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.787e-16
Identity = 53/174 (30.46%), Postives = 86/174 (49.43%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            R    L+Y    +D+ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  VD  T  +L++NF +VG++S+   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A   +E
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE 280          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_MACFA (Presenilin-1 OS=Macaca fascicularis GN=PSEN1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.787e-16
Identity = 53/174 (30.46%), Postives = 86/174 (49.43%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            R    L+Y    +D+ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  VD  T  +L++NF +VG++S+   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A   +E
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFKNLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE 280          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_HUMAN (Presenilin-1 OS=Homo sapiens GN=PSEN1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.787e-16
Identity = 53/174 (30.46%), Postives = 86/174 (49.43%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            R    L+Y    +D+ T  Q+   ++LNA + + +I ++T LLV+LY Y     +  ++  S+  +L                  VD  T  +L++NF +VG++S+   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A   +E
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVVMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYITVALLIWNFGVVGMISIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE 280          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN2_DANRE (Presenilin-2 OS=Danio rerio GN=psen2 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 52/174 (29.89%), Postives = 86/174 (49.43%), Query Frame = 1
Query:   85 RTAANLVY--LERPDDSSTQKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            ++   L+Y   E   +S  Q+L  +VLN LV + +I  +T +LVLLY Y    F+  ++  S+  +L                  +D  T  ++++NF +VG++ +   G P+ L+QAY++ +  +MA  F K LPEW+ W                P GPL++LVE A   +E
Sbjct:  113 KSGQRLIYTPFEEDPNSVGQRLLNSVLNTLVMISVIVFMTIILVLLYKYRCYKFIHGWLILSSLMLLFWFSFMYLGEVFKTYNVAMDYPTLLMIIWNFGVVGMICIHWKG-PLRLQQAYLIVISALMALIFIKYLPEWSAWVILGAISIYDLIAVLCPKGPLRMLVETAQERNE 285          
BLAST of FC877965 vs. ExPASy Swiss-Prot
Match: PSN1_MOUSE (Presenilin-1 OS=Mus musculus GN=Psen1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 53/174 (30.46%), Postives = 86/174 (49.43%), Query Frame = 1
Query:   85 RTAANLVYLERPDDSST--QKLEGAVLNALVFVILIAIVTFLLVLLYYYNFTNFLKNYVRFSAFFVLGTMGGXXXXXXXXXXXXPVDAFTCFVLLFNFTIVGVLSLFSGGIPILLRQAYMVCMGIIMAAWFTK-LPEWTTWXXXXXXXXXXXXXXXXPGGPLKLLVELASTPDE 597
            R    L+Y    +D+ T  Q+   ++LNA + + +I I+T LLV+LY Y     +  ++  S+  +L                  VD  T  +L++NF +VG++++   G P+ L+QAY++ +  +MA  F K LPEWT W                P GPL++LVE A   +E
Sbjct:  108 RKDGQLIYTPFTEDTETVGQRALHSILNAAIMISVIVIMTILLVVLYKYRCYKVIHAWLIISSLLLLFFFSFIYLGEVFKTYNVAVDYVTVALLIWNFGVVGMIAIHWKG-PLRLQQAYLIMISALMALVFIKYLPEWTAWLILAVISVYDLVAVLCPKGPLRMLVETAQERNE 280          
The following BLAST results are available for this feature:
BLAST of FC877965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
PSNA_ARATH9.664e-6365.38Presenilin-like protein At1g08700 OS=Arabidopsis t... [more]
PSNB_ARATH1.007e-3543.02Presenilin-like protein At2g29900 OS=Arabidopsis t... [more]
PSNA_DICDI2.755e-1728.86Presenilin-A OS=Dictyostelium discoideum GN=psenA ... [more]
PSN1_XENLA2.333e-1630.46Presenilin-1 OS=Xenopus laevis GN=psen1 PE=2 SV=1[more]
PSN1_MICMU5.196e-1631.03Presenilin-1 OS=Microcebus murinus GN=PSEN1 PE=2 S... [more]
PSN1_PONAB6.787e-1630.46Presenilin-1 OS=Pongo abelii GN=PSEN1 PE=2 SV=1[more]
PSN1_MACFA6.787e-1630.46Presenilin-1 OS=Macaca fascicularis GN=PSEN1 PE=2 ... [more]
PSN1_HUMAN6.787e-1630.46Presenilin-1 OS=Homo sapiens GN=PSEN1 PE=1 SV=1[more]
PSN2_DANRE1.512e-1529.89Presenilin-2 OS=Danio rerio GN=psen2 PE=2 SV=2[more]
PSN1_MOUSE1.512e-1530.46Presenilin-1 OS=Mus musculus GN=Psen1 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA18DF02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA18DF02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC877965 ID=FC877965; Name=FC877965; organism=Citrus clementina; type=EST; length=617bp
TCCCTCTGCATGCTCCTTGTGGTTCTCTTAGTCTACTCTCTTTCCCCATC
GGAGCAGTCCTTGTCCGGTGCCTCCGATCCATTCCGGACCGCCGCCAATC
TCGTGTACCTCGAACGCCCCGACGACTCCTCCACCCAGAAGCTCGAGGGC
GCCGTCCTCAACGCCCTTGTCTTCGTCATCCTCATCGCCATCGTCACTTT
CCTCCTCGTCCTCCTTTATTACTATAACTTCACCAACTTCTTGAAGAATT
ACGTGCGCTTCTCCGCCTTTTTCGTCTTAGGTACAATGGGAGGTTCGATC
TTTTTGTCGATCATTCAGCAATTCTCTATACCTGTCGATGCATTTACATG
CTTTGTACTGCTTTTTAACTTCACTATTGTGGGTGTGTTGTCTCTGTTTT
CGGGTGGGATACCGATTCTGTTGAGGCAAGCGTATATGGTGTGCATGGGA
ATCATTATGGCAGCCTGGTTTACAAAGCTGCCTGAGTGGACTACGTGGGC
CTTGCTACTGGCATTGGCTTTATATGATCTGTTTGCAGTTTTGGCGCCCG
GTGGGCCCCTTAAGTTGTTGGTGGAGTTGGCCTCTACTCCAGATGAGGAA
ACTTCCTGCTTTGGTGT
back to top