FC877999
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: MSIR6_DROME (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster GN=Rbp6 PE=1 SV=3) HSP 1 Score: 152.525 bits (384), Expect = 2.359e-36 Identity = 77/175 (44.00%), Postives = 118/175 (67.43%), Query Frame = 3 Query: 186 PGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 707 PGK+FIGGL+ +TS +FG+YG+I+++++MKD T + RGFGFVT++DP+ VDKV+ + TH ++GK+V+ K P+ A +TKKIFVGG+ + ++ K +F QFG +++ +M D T+R RGFGF+TF +E VD + + + E+ VE KKA+PK+ LP Sbjct: 28 PGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVAFPRRAHPKMVTRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK-VCEIHFHEINNKMVECKKAQPKEVMLP 201
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 1.997e-35 Identity = 74/167 (44.31%), Postives = 112/167 (67.07%), Query Frame = 3 Query: 192 KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 692 K+FIGGL +T+ ++FGKYG +TD IMKD TG+ RGFGF+++ PS VD+V++ HI++GK ++ KR IP+ + KT KIFVGGI V EF++FF Q+G + + Q+M D T +SRGFGF+T+D+ AV D + + ++ ++E+K+AEP+ Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR----DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV-DRVCQNKFIDFKDRKIEIKRAEPR 321 HSP 2 Score: 69.707 bits (169), Expect = 2.011e-11 Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 3 Query: 189 GKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI-INGKQVEIKRTIPK 422 GKIF+GG+ + +F + F ++G I D+ +M D+ TGQ RGFGFVTY VD+V ++ I +++EIKR P+ Sbjct: 243 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEPR 321
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: YHKF_SCHPO (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe GN=SPBC660.15 PE=2 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 1.691e-34 Identity = 77/213 (36.15%), Postives = 125/213 (58.69%), Query Frame = 3 Query: 147 DDRSQPHTGDGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK---KPNLPQPSYRRYNNPKPAYGSGFGDAYG 776 +D ++ + GK+FIGGL ET+ +F ++GE+ D +M+D TG+ RGFGF+T+ +P V++V+ H ++GK ++ KR IP+ + KT K+FVGG+P E+EF++FF QFG V + +M D T R RGFGF+T++ E AV+ +++ + + G VEVK+A PK + + + + + N P Y + YG Sbjct: 149 EDNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPKRAIPR----EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ-PYITIHGKPVEVKRATPKASLRDSHDRHQHGYHGNANPYYAQNM-NMYG 355
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: MSI2H_MOUSE (RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2 PE=1 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 3.189e-33 Identity = 73/175 (41.71%), Postives = 114/175 (65.14%), Query Frame = 3 Query: 186 PGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 707 PGK+FIGGL+ +TS +F K+GEI + ++M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+ A +TKKIFVGG+ ++ ++ K +F QFG+V++ +M D +T+R RGFGF+TF+ E V+ + + + E+ VE KKA+PK+ P Sbjct: 20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCEIHFHEINNKMVECKKAQPKEVMFP 193 HSP 2 Score: 69.3218 bits (168), Expect = 2.627e-11 Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = 3 Query: 423 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 695 G+ K+F+GG+ + D +D+F +FGE++E +MRD +T RSRGFGF+TF +VD +L + + EL ++ K A P++ Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHH-ELDSKTIDPKVAFPRR 100
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: MSI2H_HUMAN (RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2 PE=1 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 3.189e-33 Identity = 73/175 (41.71%), Postives = 114/175 (65.14%), Query Frame = 3 Query: 186 PGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 707 PGK+FIGGL+ +TS +F K+GEI + ++M+D T + RGFGFVT+ADP+ VDKV+ + H ++ K ++ K P+ A +TKKIFVGG+ ++ ++ K +F QFG+V++ +M D +T+R RGFGF+TF+ E V+ + + + E+ VE KKA+PK+ P Sbjct: 20 PGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK-VCEIHFHEINNKMVECKKAQPKEVMFP 193 HSP 2 Score: 69.3218 bits (168), Expect = 2.627e-11 Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = 3 Query: 423 GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 695 G+ K+F+GG+ + D +D+F +FGE++E +MRD +T RSRGFGF+TF +VD +L + + EL ++ K A P++ Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHH-ELDSKTIDPKVAFPRR 100
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: RB27C_DROME (Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila melanogaster GN=Hrb27C PE=1 SV=2) HSP 1 Score: 140.584 bits (353), Expect = 9.277e-33 Identity = 77/197 (39.09%), Postives = 123/197 (62.44%), Query Frame = 3 Query: 189 GKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYG 776 GK+F+GGL+ ET+ ++F ++G+I D V+MK+ ++G+ RGFGFVT+ADP+ V+ V+++ H ++G+ ++ K P+ K K+F+GG+PS+V E + + FF ++G+V E IM D +SRGFGF++F+ E +V+ + + L G QVE+KKAEP+ + Q S NN S G AYG Sbjct: 7 GKLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKPCNPRTLQKPKKGGGYKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEH-VTNERYINLNGKQVEIKKAEPRDGSGGQNS----NN------STVGGAYG 192
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: SQD_DROME (RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1 SV=3) HSP 1 Score: 139.043 bits (349), Expect = 2.699e-32 Identity = 85/245 (34.69%), Postives = 125/245 (51.02%), Query Frame = 3 Query: 105 DSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR------------------RYNNPKPAYGS--GFGDAYG 776 ++ D + + D +G K+F+GGL+ ET+ + HFGKYGEI + D +TG+ RGF F+ + + +DKV D HIIN K+V+ K+ + KIFVGG+ + ++++E K +F QFG + E ++ D S+ +GF FITFD+EQ V DLL K K ++AG +V+VK+A PK N R YNN GS G+G YG Sbjct: 28 ENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG---------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQKIAGKEVDVKRATPKPENQMMGGMRGGPRGGMRGGRGGYGGRGGYNNQWDGQGSYGGYGGGYG 262
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: MSI1H_HUMAN (RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.285e-31 Identity = 78/207 (37.68%), Postives = 123/207 (59.42%), Query Frame = 3 Query: 144 EDDRSQPHTGDGASPG---KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYG 752 E D QP SP K+FIGGL+ +T+ ++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKIFVGG+ + ++ K +F QFG+V + +M D +T+R RGFGF+TF++E V+ + + + E+ VE KKA+PK+ P S R + P YG Sbjct: 2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP-YG 206
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: MSI1H_RAT (RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1 PE=2 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.984e-31 Identity = 78/207 (37.68%), Postives = 123/207 (59.42%), Query Frame = 3 Query: 144 EDDRSQPHTGDGASPG---KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYG 752 E D QP SP K+FIGGL+ +T+ ++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKIFVGG+ + ++ K +F QFG+V + +M D +T+R RGFGF+TF++E V+ + + + E+ VE KKA+PK+ P S R + P YG Sbjct: 2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP-YG 206
BLAST of FC877999 vs. ExPASy Swiss-Prot
Match: MSI1H_MOUSE (RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.984e-31 Identity = 78/207 (37.68%), Postives = 123/207 (59.42%), Query Frame = 3 Query: 144 EDDRSQPHTGDGASPG---KIFIGGLARETSSAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAYG 752 E D QP SP K+FIGGL+ +T+ ++FG++GE+ + ++M+D T + RGFGFVT+ D + VDKV+ + H ++ K ++ K P+ A +TKKIFVGG+ + ++ K +F QFG+V + +M D +T+R RGFGF+TF++E V+ + + + E+ VE KKA+PK+ P S R + P YG Sbjct: 2 ETDAPQPGLASPDSPHDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK-VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP-YG 206 The following BLAST results are available for this feature:
BLAST of FC877999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 136
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Sequences
The
following sequences are available for this feature:
EST sequence >FC877999 ID=FC877999; Name=FC877999; organism=Citrus clementina; type=EST; length=776bpback to top |