FC878015

Overview
NameFC878015
Unique NameFC878015
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length823
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11267 contig Ccv1_Contig11267:162..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878015 vs. ExPASy Swiss-Prot
Match: C78A4_PINRA (Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 PE=2 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.927e-63
Identity = 124/200 (62.00%), Postives = 152/200 (76.00%), Query Frame = 1
Query:  223 GGVAWQNGRNQRGSVAIPGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILTSPHFADRPIKQSAECLMFSRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSVFGVRYDIDRDSKSLQELTEMVREGFELL 822
            GG AW  GR++RG VAIPGPKG P+ GSL  +S GL HR L ++A   G  QLM+FSLG  TPAV+ SDP  A+E+LTSPHFA+RP+KQSA+ L+F RAIGFAPNG YWRLLRRIAS+HLF+PRRI AHE GR  D   ML +I  E    G V +R+HLQ AALNNIMGSVFG R+D+  +++ +++L EMV EGF+LL
Sbjct:   64 GGCAWA-GRHKRGRVAIPGPKGWPIIGSLMDMSVGLPHRKLESLARLHGAKQLMSFSLG-CTPAVITSDPEVARELLTSPHFANRPLKQSAQQLLFGRAIGFAPNGGYWRLLRRIASAHLFAPRRIAAHEAGRQADVVAMLDDIQKEYHSKGVVRVRRHLQGAALNNIMGSVFGRRFDMSHENEEVKKLREMVDEGFQLL 261          
BLAST of FC878015 vs. ExPASy Swiss-Prot
Match: C78AB_ORYSJ (Cytochrome P450 78A11 OS=Oryza sativa subsp. japonica GN=CYP78A11 PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 3.077e-61
Identity = 128/213 (60.09%), Postives = 152/213 (71.36%), Query Frame = 1
Query:  205 WAFSTGGGVAWQNGRNQRGSVAIPGPKGVPLFGSLFTLSRGLAHRTLAAM---AWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILTSPHFADRPIKQSAECLMFSRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSVFGVRYDIDRDS----KSLQELTEMVREGFELL 822
            WA S GG  AW +GR + G+  I GP+G+P+FGS+F LSRGL HR L AM   A +    +LMAFS+G  TPAVV+S P TA+E+L  P FADRP+K+SA  L+F+RAIGFAP+G YWRLLRRIAS+HLFSPRR+ AHEPGR  D   ML  +A EQ   G V LR HLQ AALNNIMGSVFG RYD+   S       ++L  MVREGFELL
Sbjct:   53 WAASPGGP-AWAHGRGRLGATPIEGPRGLPVFGSIFALSRGLPHRALDAMSRDAAAPRARELMAFSVG-ETPAVVSSCPATAREVLAHPSFADRPLKRSARELLFARAIGFAPSGEYWRLLRRIASTHLFSPRRVAAHEPGRQADATAMLSAMAAEQSATGAVVLRPHLQAAALNNIMGSVFGRRYDVSSSSGAAADEAEQLKSMVREGFELL 263          
BLAST of FC878015 vs. ExPASy Swiss-Prot
Match: C78A1_MAIZE (Cytochrome P450 78A1 OS=Zea mays GN=CYP78A1 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.609e-49
Identity = 113/209 (54.07%), Postives = 133/209 (63.64%), Query Frame = 1
Query:  205 WAFSTGGGVAWQNGRNQRGSVAIPGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNT-QLMAFSLGGSTPAVVASDPYTAKEILTSPHFADRPIKQSAECLMFSRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSVFGVRYDI--DRDSKSLQELTEMVREGFELL 822
            WA S GG  AW NGR    S+    P   P   +        A R        R    +LMAFS+G  TPAVV+S P TA+E+L  P FADRP+K+SA  LMF+RAIGFAPNG YWR LRR+AS+HLFSPRR+ +HEPGR  D   ML +IA EQ  +G V+LR HLQ AALNNIMGSVFG RYD+     +   + L  MVREGFELL
Sbjct:   52 WATSPGGP-AWTNGRGASASLLSWDPVVCPCSAASSRCPGAAAPRPRRDGPRRRPRAKELMAFSVG-DTPAVVSSCPATAREVLAHPSFADRPVKRSARELMFARAIGFAPNGEYWRRLRRVASTHLFSPRRVASHEPGRQGDAEAMLRSIAAEQSASGAVALRPHLQAAALNNIMGSVFGTRYDVTSGAGAAEAEHLKSMVREGFELL 258          
BLAST of FC878015 vs. ExPASy Swiss-Prot
Match: C78A3_SOYBN (Cytochrome P450 78A3 OS=Glycine max GN=CYP78A3 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 6.903e-37
Identity = 101/245 (41.22%), Postives = 138/245 (56.33%), Query Frame = 1
Query:   91 EKSLWVFTLFGSLAQQNXXXXXXXXXXXXXXXXXXXXTWAFSTGGGVAWQNGRNQRGSVAI-PGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILTSPHFADRPIKQSAECLMFSRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSVFGVRYDIDRDSKSLQELTEMVREGFELL 822
            + +LW+  L     Q+N                     + +S  GG AW         ++I PGPKG PL GS+  L   LAH  +AA A +    +LMAFSLG  T  +V   P  AKEIL S  FADRP+K+SA  LMF+RAIGFA  G YWR LRRIAS+HLF PR+I A E  R    A M+H I N ++H   + +R+ L+ A+L+N+M SVFG  Y +   +  +++L  +V +G++LL
Sbjct:    6 DDNLWIIALTSKCTQENLAWVLLIMGSLWLTMTF----YYWSHPGGPAWGKYYTYSPPLSIIPGPKGFPLIGSM-GLMTSLAHHRIAAAAATCRAKRLMAFSLG-DTRVIVTCHPDVAKEILNSSVFADRPVKESAYSLMFNRAIGFASYGVYWRSLRRIASNHLFCPRQIKASELQRSQIAAQMVH-ILNNKRHRS-LRVRQVLKKASLSNMMCSVFGQEYKLHDPNSGMEDLGILVDQGYDLL 242          
BLAST of FC878015 vs. ExPASy Swiss-Prot
Match: C71A9_SOYBN (Cytochrome P450 71A9 OS=Glycine max GN=CYP71A9 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.236e-11
Identity = 59/181 (32.60%), Postives = 92/181 (50.83%), Query Frame = 1
Query:  274 PGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILTSPH--FADRPIKQSAECLMFSRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSV-FGVRYDIDRDSKSLQELTEMVRE 807
            PGP+ +P  G+L  L   L H++L  ++   G   LM   LG S P +V S    A+EI  +    F+ RP   +A  L +   + FAP G YWR +R+I    L SP+R+ + E  R  +  ++L  IA     +G V+L   L L+  NNI+  +  G R     D  +  +++EM++E
Sbjct:   35 PGPRKLPFIGNLHQLGT-LPHQSLQYLSNKHG--PLMFLQLG-SIPTLVVSSAEMAREIFKNHDSVFSGRPSLYAANRLGYGSTVSFAPYGEYWREMRKIMILELLSPKRVQSFEAVRFEEVKLLLQTIA---LSHGPVNL-SELTLSLTNNIVCRIALGKRNRSGADDAN--KVSEMLKE 205          
BLAST of FC878015 vs. ExPASy Swiss-Prot
Match: C71AN_ARATH (Cytochrome P450 71A23 OS=Arabidopsis thaliana GN=CYP71A23 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.920e-11
Identity = 52/175 (29.71%), Postives = 84/175 (48.00%), Query Frame = 1
Query:  265 VAIPGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILTSPH--FADRPIKQSAECLMF-SRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSVFGVRYDIDRDSKSL 780
            +  P P  +PL G+L  LS+   HR+L  ++   G   L+ F   GS P +VAS    A+++L +    FA RP  +  E L++ SR +  AP G YWR ++ ++  HL S + + + +  R  +  +M+  I         V+L K L     + I     G +Y +  D K L
Sbjct:   28 INFPSPPRLPLIGNLHQLSQH-PHRSLCYLSHRYGPLMLLHF---GSVPVIVASTAEAARDVLKTHDRVFASRPRSKIFEKLLYKSRNMASAPYGEYWRQMKSVSVLHLLSNKMVRSFQDVRQEEITLMMETIRKSSSKP--VNLSKILSSLTNDVICRVALGRKYGVGTDFKEL 196          
BLAST of FC878015 vs. ExPASy Swiss-Prot
Match: C71BX_ARATH (Cytochrome P450 71B36 OS=Arabidopsis thaliana GN=CYP71B36 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.982e-11
Identity = 48/177 (27.12%), Postives = 82/177 (46.33%), Query Frame = 1
Query:  232 AWQNGRNQRGSVAIPGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILT--SPHFADRPIKQSAECLMFSRA-IGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSVFGVRY 753
            A+ + + Q+     P P G P+ G+L  L   L H++L  ++   G+  L+ F   GS P VV S   TAK++L     H   RP       L ++   I F+P   YW+ LRRI    LFS +R+ + +P +  +   ++ +++        V+L +      +     + FGV +
Sbjct:   19 AFTHKKRQQHQRKPPSPPGFPIIGNLHQLGE-LPHQSLWRLSKKYGHVMLLKF---GSIPTVVVSSSETAKQVLKIHDLHCCSRPSLAGPRALSYNYLDIAFSPFDDYWKELRRICVQELFSVKRVQSFQPIKEDEVKKLIDSVSESASQGTPVNLSEKFTSLTVRVTCKATFGVNF 191          
BLAST of FC878015 vs. ExPASy Swiss-Prot
Match: C71BA_ARATH (Cytochrome P450 71B10 OS=Arabidopsis thaliana GN=CYP71B10 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.506e-11
Identity = 51/189 (26.98%), Postives = 87/189 (46.03%), Query Frame = 1
Query:  274 PGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILT--SPHFADRPIKQSAECLMFSRA-IGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSVFGVRYD---IDRDSKSLQELTEMVREGFELL 822
            P P G+P+ G+L  L   L H++L  ++   G   L+     G  P V+ S P TAK++L     H   RP  +    L ++   I F+    YW+ LR++    LF  +RI + +P +  +   ++ +IA        V+L        +N I  +VFGV +    ++ D     +  ++V E  E+L
Sbjct:   32 PSPPGLPIIGNLHQLGE-LPHQSLCKLSKKYGPVMLLKL---GRVPTVIVSTPETAKQVLKDYDLHCCSRPSLEGTRKLSYNYLDIAFSRFDDYWKELRKLCVEELFCNKRINSIQPIKEAEMEKLIDSIAESASQKTLVNLSDTFLSLNVNVICKAVFGVNFQGTVLNND-----KFQDLVHEALEML 211          
BLAST of FC878015 vs. ExPASy Swiss-Prot
Match: C71A2_SOLME (Cytochrome P450 71A2 OS=Solanum melongena GN=CYP71A2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.497e-11
Identity = 52/172 (30.23%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  253 QRGSVAIPGPKGVPLFGSLFTLSRGLAHRTLAAMAWSRGNTQLMAFSLGGSTPAVVASDPYTAKEILTSPH--FADRPIKQSAECLMF-SRAIGFAPNGTYWRLLRRIASSHLFSPRRILAHEPGRHLDCAVMLHNIANEQKHNGFVSLRKHLQLAALNNIMGSV-FGVRYD 756
            ++  + +P P+ +P+ G+L  L   L HR+L  ++   G   L+ F   GS P +VAS    A++I+ +    +A RP     + L + S+ +GF+P G YWR  + I   HL S  R+ ++   R  + A M+  I  +   +  ++L +HL  +  NNI+  V  G  YD
Sbjct:   32 KQNMLLLPSPRKLPIIGNLHQLG-SLPHRSLHKLSQKYGPVMLLHF---GSKPVIVASSVDAARDIMKTHDVVWASRPKSSIVDRLSYGSKDVGFSPFGEYWRRAKSITVLHLLSNTRVQSYRNVRAEETANMIGKI-RQGCDSSVINLGEHL-CSLTNNIISRVALGRTYD 197          
The following BLAST results are available for this feature:
BLAST of FC878015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
C78A4_PINRA1.927e-6362.00Cytochrome P450 78A4 OS=Pinus radiata GN=CYP78A4 P... [more]
C78AB_ORYSJ3.077e-6160.09Cytochrome P450 78A11 OS=Oryza sativa subsp. japon... [more]
C78A1_MAIZE4.609e-4954.07Cytochrome P450 78A1 OS=Zea mays GN=CYP78A1 PE=2 S... [more]
C78A3_SOYBN6.903e-3741.22Cytochrome P450 78A3 OS=Glycine max GN=CYP78A3 PE=... [more]
C71A9_SOYBN2.236e-1132.60Cytochrome P450 71A9 OS=Glycine max GN=CYP71A9 PE=... [more]
C71AN_ARATH2.920e-1129.71Cytochrome P450 71A23 OS=Arabidopsis thaliana GN=C... [more]
C71BX_ARATH4.982e-1127.12Cytochrome P450 71B36 OS=Arabidopsis thaliana GN=C... [more]
C71BA_ARATH6.506e-1126.98Cytochrome P450 71B10 OS=Arabidopsis thaliana GN=C... [more]
C71A2_SOLME8.497e-1130.23Cytochrome P450 71A2 OS=Solanum melongena GN=CYP71... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE06RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878015 ID=FC878015; Name=FC878015; organism=Citrus clementina; type=EST; length=823bp
AAAAGAAAAAAAACAAAAAGAAACTCAACTACTCATTCCTCTGCAAGTTA
AACAATATTTAATAACATGGAGTTAGGGTTTATCGATAGAGAAAAATCTT
TGTGGGTTTTCACTCTCTTTGGTTCTCTTGCTCAACAAAATCTTTTTGAT
TCGTATAGTTTGTTGTCACTCTTTTTAGCTTTGGTTTTGCTTTATCTACT
CACTTGGGCTTTCTCCACCGGCGGCGGAGTCGCGTGGCAGAACGGGAGAA
ACCAGAGAGGCTCCGTCGCGATCCCGGGACCAAAGGGTGTTCCGTTATTT
GGCAGCTTGTTCACTCTGAGCCGCGGCTTGGCTCATCGGACGTTAGCAGC
CATGGCTTGGAGCCGAGGGAACACTCAGCTGATGGCCTTCAGCCTCGGCG
GCTCGACTCCCGCTGTGGTCGCCTCCGACCCTTACACTGCCAAAGAAATC
TTGACGTCGCCCCACTTCGCTGACCGTCCGATCAAGCAGTCAGCTGAGTG
CCTGATGTTCAGCCGGGCAATAGGCTTCGCTCCCAACGGGACTTACTGGC
GACTCTTGCGCAGAATTGCTTCGTCTCACCTTTTCTCTCCCCGGCGCATT
TTAGCCCACGAACCCGGCCGCCACCTAGACTGCGCTGTCATGCTACACAA
CATTGCAAACGAACAGAAACATAACGGTTTTGTCTCTTTAAGGAAACACC
TCCAGTTGGCTGCCTTGAACAACATCATGGGAAGTGTGTTCGGCGTCAGA
TACGATATTGACCGCGATAGCAAATCGCTTCAAGAGCTCACCGAAATGGT
AAGGGAAGGTTTTGAGTTATTGG
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