FC878042

Overview
NameFC878042
Unique NameFC878042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length920
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878042_ssr716 microsatellite FC878042_ssr716:716..727. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11453 contig Ccv1_Contig11453:42..961. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC878042 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.410e-14
Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 3 
Query:   87 NGAAPEKAPATVASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVS 326
            NGA P +   T   FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS
Sbjct:   12 NGAGPVE---THLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVS 88
The following BLAST results are available for this feature:
BLAST of FC878042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH7.410e-1453.75Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA69AF03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA69AF03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878042 ID=FC878042; Name=FC878042; organism=Citrus clementina; type=EST; length=920bp
TTTCTCTCTCCTAGGGTCAGGTTTCTTTCCTTTGTCTCTAGACTCCATAA
CTCTCTCGCTCAATGGCTGATGTCCAGGAGGTTCAGAATGGAGCTGCGCC
GGAGAAGGCTCCTGCTACCGTGGCCAGCTTCACGGGGATGAAGCCGCAGT
TGCTTGTGGAAGCACCGAAGGCTACTGACGCTGTTCAGTTCTACAAGACC
GCGTTTGGTGCCGTGGAGATCGGCCGTAGCGTGGAAACCAAACGCAAGGC
TGAACAGGAGCTCCCACTCATCTCCTGCGCTCAACTCGAGATTGCCGGCT
CCACTTTCCTTGTCTCTGACGTTTCCGGTGACTCTGCTGCGTACGTTTCT
TGAACACTGAGTTTGTTTATGTTTTTTTTATCAGATCTAGCTTTATGCTT
AGAGTTTAATTGCTTTCCGTTGTTGCATCTTGATGTTCTTTGAACATTCA
CGTACTTGAATCTGTACGTTGTTGCTCGACTGTTCTTTTGTCTTTTGTTT
TTAATTTTAAGATCTGTTTAAGTGCTTGTTTTGTACTATTTTACTTGTTG
GCTTGGCAATATTTTGTATAAAATACATTTAACATTTATTTATATATTTT
CGCTATTCTTTCCCTGTGATTTTTGTTCTTGAATCTCCCTTGTAATCAGA
TTTTTGACCTTTAGTTGACTTTGTCTATTTTCTGGATTTTTGTCTTGGAT
GTTTGGCTCATTATTTTTATTTATTTACGGTTTTGACCAGTGCACAGACC
GTGGGGACCGGATGCGTGCTTTGCTTGGAGACCGAGGACGTGGAGGCTGC
CGTCGCCAAGGCTGTGAGTGCTGGAGCTGTTGCTGAGGGTGAGCTCGCTG
AAGGCAACGGCGCGTGTTGTGGAGAGCGCGTGGGAAAGGTCAAAGATCCT
TATGGCTTTACTTGGCTCAT
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