FC878207
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNS3 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9311) GN=rlmN PE=3 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 2.018e-66 Identity = 128/243 (52.67%), Postives = 173/243 (71.19%), Query Frame = 3 Query: 159 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL------QSTLAISLHAPNQKLRESIVPSAKSYPLE 869 + LLG S+ EL++ AV GQ ++RG+QLH +Y + V++++ LP+++R LQ G +VGRL +AD T KLL+ ED +ETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L+ HEIV QVL+I E+ + R ++VVFMGMGEP+LN+++VLE+ RCLN D+ IGQR IT+STVGVP+T+ +LA L Q TLA+SLHAPNQ LRE ++P+AK+YP + Sbjct: 3 SALLGRSKSELEEWAVAQGQPAFRGRQLHDWLYAKGVRDLQGITVLPKAWRASLQNEGVSVGRLHEQERRVSADATTKLLLGTEDGETLETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLAGHEIVAQVLSIREVMERRPSHVVFMGMGEPLLNIEAVLESIRCLNDDLGIGQRRITVSTVGVPHTLPRLADLALKQLGRAQFTLAVSLHAPNQALREELIPTAKTYPYD 240
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THEEB (Ribosomal RNA large subunit methyltransferase N OS=Thermosynechococcus elongatus (strain BP-1) GN=rlmN PE=3 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 3.806e-65 Identity = 129/235 (54.89%), Postives = 163/235 (69.36%), Query Frame = 3 Query: 162 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPL 866 VLLG S EL+ GQ YRG+QLH +Y++ + ++ P+ +R L + +GR I A DGTVKLL+ L D IETVGIP D RLT CVSSQVGCP+ C FCATGKGG+ RNL+ HEI+ QVL I+ RV++VVFMGMGEP+LNL +VL+A CLN+D+ IGQR ITISTVG+P I++LA ++LQ+TLA+SLHAPNQ LRE ++PSAK YPL Sbjct: 2 VLLGRSAAELKAWVEAQGQPGYRGQQLHQWLYRKGARSLQEITVFPKQWRAALADV--EIGRSEIRYRHDAQDGTVKLLLALADGETIETVGIPSSD-----RLTVCVSSQVGCPMACDFCATGKGGYRRNLACHEILDQVLTIQSEMGRRVSHVVFMGMGEPLLNLPAVLQAITCLNRDIGIGQRHITISTVGIPQQIQRLAQHQLQTTLAVSLHAPNQALREQLIPSAKHYPL 229
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_ACAM1 (Ribosomal RNA large subunit methyltransferase N OS=Acaryochloris marina (strain MBIC 11017) GN=rlmN PE=3 SV=1) HSP 1 Score: 247.669 bits (631), Expect = 6.492e-65 Identity = 129/235 (54.89%), Postives = 165/235 (70.21%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLG S+ +L A Q +YRG+Q+H IY++ V + + LP+ +R ++ + VGR I A DGTVK L+KL D ++IETVGIP + RLT CVSSQVGCP+ C FCATGKG + RNL+ HEIV QVL ++E F+ RV NVVFMGMGEP+LNL+ VL A R LN+DV IGQR +T+STVG+P I KLA ++LQ TLA+SLHA NQ++R +VPSAK YPLE Sbjct: 13 LLGASKAQLTHWAQTYQQPAYRGQQVHQWIYQKGVHSLSDITVLPKQWRTEIADI--PVGRSQIHHRSAAQDGTVKYLLKLADGQIIETVGIPTQK-----RLTVCVSSQVGCPMGCDFCATGKGEYQRNLACHEIVDQVLTVQEDFQQRVGNVVFMGMGEPLLNLEQVLAAVRSLNQDVGIGQRSLTVSTVGIPKQILKLAQHQLQITLAVSLHASNQRIRTQLVPSAKHYPLE 240
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROM4 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain MIT 9211) GN=rlmN PE=3 SV=1) HSP 1 Score: 246.514 bits (628), Expect = 1.446e-64 Identity = 126/242 (52.07%), Postives = 169/242 (69.83%), Query Frame = 3 Query: 162 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASY------KLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 VLLG + +L+KLA + G+ ++RG+Q+H +Y++ V+++E LP+ +R L + G GRL + + A DGT+KLL++ D IE VGIP RLT CVSSQVGC + C FCATGKGGF R+L HEIV QVL+I E F R +++VFMGMGEP+LN++SVLE+ CLN D+ IGQR IT+STVGV NT+ +LA ++Q TLA+SLHAPNQ LRE +VPSAK YP++ Sbjct: 12 VLLGQNVAKLEKLAQEYGEPAFRGRQIHEWLYQKGVRKLEEISVLPKLWRTTLSDQGVCTGRLEEVKRLVANDGTIKLLLETSDRESIEAVGIPTNS-----RLTTCVSSQVGCSMGCRFCATGKGGFQRSLEVHEIVDQVLSIREAFDRRPSHIVFMGMGEPLLNIESVLESISCLNNDLGIGQRRITVSTVGVVNTLPQLAELALAKLGRVQFTLALSLHAPNQHLREMLVPSAKVYPIQ 248
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNPX (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain WH8102) GN=rlmN PE=3 SV=1) HSP 1 Score: 245.358 bits (625), Expect = 3.222e-64 Identity = 126/242 (52.07%), Postives = 164/242 (67.77%), Query Frame = 3 Query: 162 VLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL------QSTLAISLHAPNQKLRESIVPSAKSYPLE 869 +LLG S EL+ AV GQ+ +RG+QLH +Y + + + LP+++R L+E G VGRL AAD T KLL+ +D IETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L +HEIV QVL++ E+ R +++VFMGMGEP+LN ++VL+A RCLN D+ IGQR IT+STVGVP T+ +LA L Q TLA+SLHAPNQ LRE ++P+A +YP E Sbjct: 1 MLLGRSAAELESWAVAQGQKPFRGRQLHDWLYAKGARSLSEITVLPKAWRESLKEDGVEVGRLKEVHRSVAADATTKLLLSTDDGETIETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLRTHEIVDQVLSVREVMDRRPSHIVFMGMGEPLLNSQAVLDAIRCLNDDLGIGQRRITVSTVGVPKTLPQLAELALATLGRAQFTLAVSLHAPNQALREELIPTAHAYPYE 237
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNS9 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9902) GN=rlmN PE=3 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 4.208e-64 Identity = 124/243 (51.03%), Postives = 165/243 (67.90%), Query Frame = 3 Query: 159 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASY------KLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 NVLLG S EL+ AV G +S+RG+Q+H +Y + VK + LP+ +R +L+ + VGRL + AAD T KLL+ +D IETVGIP + RLT C+SSQVGCP+ C FCATGK G R+L++HEIV QVL++ E R ++VVFMGMGEP+LN ++VLE RCLN D+ IGQR IT+STVGVP T+ +LA + Q TLA+SLHAPNQ+LRE ++P+A +YP + Sbjct: 3 NVLLGRSAAELEDWAVAQGHKSFRGRQIHDWLYNKGVKSLSEISALPKQWRTELEAQTFRVGRLKLVHQSVAADATTKLLLATDDGETIETVGIPTDQ-----RLTVCISSQVGCPMACRFCATGKSGLQRSLATHEIVDQVLSVREAMDRRPSHVVFMGMGEPLLNSEAVLETIRCLNTDLGIGQRRITVSTVGVPKTLPQLAELAMEKLGRAQFTLAVSLHAPNQQLREELIPTAHAYPYD 240
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROM1 (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain NATL1A) GN=rlmN PE=3 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 7.177e-64 Identity = 122/251 (48.61%), Postives = 174/251 (69.32%), Query Frame = 3 Query: 135 SRAPRVDANV-LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASY------KLQSTLAISLHAPNQKLRESIVPSAKSYPL 866 ++ P++ +N LLG+S ++L++ A G++S+RG+Q+H IY+R K +++ LP+ +R+ L G +GRL V A D T+KLL+ D ++ETVGIP + RLT CVSSQ+GCP+ C FCATGKGG +R+L +EIV QV+++ E R T+VVFMGMGEP+LN+++VL++ CL D+ IGQR IT+STVG+PNT+ LA ++Q TLA+SLHAPNQ LRE I+PSA SYP+ Sbjct: 2 TKLPKLSSNSSLLGLSSEDLEEFARQEGEKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMGTFDGEIVETVGIPTDK-----RLTVCVSSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQVISVRETMNRRPTHVVFMGMGEPLLNIQNVLDSIECLTSDIGIGQRKITVSTVGIPNTLSDLAKLAQDRLGRVQFTLAVSLHAPNQTLRELIIPSASSYPI 247
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_ANAVT (Ribosomal RNA large subunit methyltransferase N OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rlmN PE=3 SV=1) HSP 1 Score: 244.202 bits (622), Expect = 7.177e-64 Identity = 130/259 (50.19%), Postives = 174/259 (67.18%), Query Frame = 3 Query: 93 VSVTPRRKLSVSSSSRAPRVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 +S TP +L+ SS + P + LLG S EL GQ +YRGKQLH IY + V+ + + + +R + + +GR I A+DGTVK L++L D ++ETVGIP + RLT CVS+QVGCP+ C FCATGKGG+ RNL HEIV QVL ++E F+ RV++VVFMGMGEP+LN ++VL A R LN+DV IGQR +T+STVG+ + I +LA + LQ TLA+SLHAPNQ LRE ++PSA+SY +E Sbjct: 1 MSATPVTQLTPSSQPQQPCLP---LLGASVTELTSWVQQQGQPAYRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVADV--PIGRSTIHHRSVASDGTVKYLLQLSDGEIVETVGIPTDK-----RLTVCVSTQVGCPMACDFCATGKGGYKRNLERHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNTENVLAALRSLNQDVGIGQRSLTLSTVGIRDRISQLAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIE 249
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_TRIEI (Ribosomal RNA large subunit methyltransferase N OS=Trichodesmium erythraeum (strain IMS101) GN=rlmN PE=3 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 9.374e-64 Identity = 125/234 (53.42%), Postives = 166/234 (70.94%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPL 866 LLG+S +L + GQ +YRGKQL+ IY++ K + + + +R ++ + + +GR I A D TVK L+KL D +IETVGIP RLT CVSSQVGCP+ C FCATGKGGFSRNL +HEI+ QVL ++E F+ RV+++VFMGMGEP+LN K+VL A R LN+D+ IGQR+ITIST G+ + I++LA +KLQ TLA+SLHA NQ+LRE ++PSAK YPL Sbjct: 13 LLGLSLAKLTEWVQQQGQPAYRGKQLYQWIYQKGAKSLADITVFSKQWREEI--SNFPIGRSVIHHRSVAPDATVKYLLKLSDGNIIETVGIPTYK-----RLTVCVSSQVGCPMACDFCATGKGGFSRNLEAHEIIDQVLTVQEDFERRVSHIVFMGMGEPLLNTKNVLAAVRSLNQDLGIGQRLITISTSGIRDRIRQLAQHKLQVTLAVSLHASNQRLREHLIPSAKFYPL 239
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNPW (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain WH7803) GN=rlmN PE=3 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 9.374e-64 Identity = 121/244 (49.59%), Postives = 168/244 (68.85%), Query Frame = 3 Query: 156 ANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASY------KLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 + LLG+ EL++ AV GQ ++RG+QLH +Y + ++++ LP+++R LQ+ G +GRL A D T KLL+ +D +ETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L +HEIV QVL++ E+ + R ++VVFMGMGEP+LN+++VL+A RCLN D+ IGQR IT+STVGVP T+ +LA + Q TLA+SLHAPNQ LRE ++P+A +YP + Sbjct: 7 SKTLLGLGASELERWAVSQGQSAFRGRQLHDWLYAKGACDLQDITVLPKAWRASLQDKGVIIGRLKEQDRKVAGDATTKLLLGTDDGETLETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLYTHEIVAQVLSVREVMERRPSHVVFMGMGEPLLNIEAVLDAIRCLNDDLGIGQRRITVSTVGVPRTLPRLAELAMERLGRAQFTLAVSLHAPNQSLREELIPTAHAYPYD 245 The following BLAST results are available for this feature:
BLAST of FC878207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878207 ID=FC878207; Name=FC878207; organism=Citrus clementina; type=EST; length=869bpback to top |