FC878215

Overview
NameFC878215
Unique NameFC878215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878215_ssr76 microsatellite FC878215_ssr76:76..101. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878215_ssr174 microsatellite FC878215_ssr174:174..185. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11344 contig Ccv1_Contig11344:98..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana GN=PP2A15 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.541e-88
Identity = 151/185 (81.62%), Postives = 168/185 (90.81%), Query Frame = 3
Query:  237 MGASLSSLTD--NGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAK 785
            MG+SLS+L D  NG +MGPGLGDIPESCVACVFMYLTPPEICNLA LN +FRGAASSDSVWE KLP NYQDLLDL+PPERY +LSKKDIFA+LSRP+PFDD NKEVW+DRVTGRVC++IS + M+ITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG V+F LP  VY++SFR+HLGRF K
Sbjct:    1 MGSSLSNLNDGTNGLAMGPGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLSFRIHLGRFTK 185          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: P2A12_ARATH (F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P2A12 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.076e-52
Identity = 99/180 (55.00%), Postives = 127/180 (70.56%), Query Frame = 3
Query:  246 SLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAK 785
            S SS   +   + PGLGD+PE+CVA +   L P EIC  ++LN AFRGA+ +D VWE+KLP NY+D+L+ +      NL K+ ++A LSR   FDD  K+VW+D+ T  VCLSIS K ++ITGI+DRRYW+ IPT+ESRF  VAYLQQIWWFEVDG + FP P   Y++ FRL LGR  K
Sbjct:   13 SSSSCFGDRNILKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGK 192          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: P2A11_ARATH (F-box protein PP2-A11 OS=Arabidopsis thaliana GN=PP2A11 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.931e-50
Identity = 94/180 (52.22%), Postives = 128/180 (71.11%), Query Frame = 3
Query:  246 SLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAK 785
            +LSS   + + + PGLGD+PESCVA +   L P EIC  ++LN AF GA+ +D VWE+KLP +Y+ +L+ +      NL K+DIF  LSR   FD+GNK+ W+D+ TG +CL  S K ++ITGI+DRRYW+ IP+++SRF  VAY+QQIWWF+VDG + FP PA  Y+V FRL LG+  K
Sbjct:   11 NLSSCYGDRDLLQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYKLILEKILGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLSITGIDDRRYWSHIPSDDSRFASVAYVQQIWWFQVDGEIDFPFPAGTYSVYFRLQLGKPGK 190          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 7.219e-49
Identity = 98/190 (51.58%), Postives = 132/190 (69.47%), Query Frame = 3
Query:  237 MGASLSS------LTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLN-LSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGRFAK 785
            MGA++S         D+  S    L D+PE+CVA +   L PPEIC LARLN  FR A+S+D +WE+KLP+NY+ +   +  E  L  L KKD++A LS+P  FDDG KE+W+D+ TGR+CLSIS+KA+ ITGI+DRRYW+ IPT+ESRF   AY+QQIWWFEV G  +   P+  Y++ FR+ LG+ +K
Sbjct:    1 MGANISGGSPEFDRNDDVYSRKLRLVDLPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPSGTYSLFFRIQLGKTSK 190          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: P2A14_ARATH (F-box protein PP2-A14 OS=Arabidopsis thaliana GN=PP2A14 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.558e-43
Identity = 89/189 (47.09%), Postives = 125/189 (66.14%), Query Frame = 3
Query:  237 MGASLSSLTDNGESMGP--GLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERY-------LNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPADVYTVSFRLHLGR 776
            MGA+ SS+  +    G   GL D+PE+C+  +FMY+ PPEIC LAR+N +F  A+ SD+VWE+KLPSNY+ L+  +  ++        L   KK+I+A L RP  FD G KE WLD+ +G+V L+IS KAM ITGI+DRRYW  I ++ESRF  + YL+QIWW E  G ++F      Y++ F++ LG+
Sbjct:    1 MGAASSSIVRSEPFAGKLCGLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRSDAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIRFEFAPGKYSLLFKIQLGK 189          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.566e-25
Identity = 51/137 (37.23%), Postives = 80/137 (58.39%), Query Frame = 3
Query:  303 PESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 713
            PE C++ +  +  P + C  A ++  F     SD +WE  LP++Y+ L+   PP R  +  K+  F+L + PV FDD  K VWL++ +G+ CL +S   ++I   ++ +YW WIP  ESRF  VA L+ + WFE+ G
Sbjct:   18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLI---PPSRVFSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFEKVAKLRDVCWFEIRG 151          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.712e-24
Identity = 56/146 (38.36%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  282 GPGLGD-IPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSIS-TKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 713
            GP L D +PE C++ +  + +P + C  A ++  F  A +SDSVW+  LPS+Y     L+PP R  +  K+  FA+   PV  +DG K  WL++  G+ C  +S  K+M IT +   +YW WI   E+RF  V  L  + WFEV G
Sbjct:   38 GPSLFDNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYS---SLVPPSRVFSSKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPEARFEEVPELLNVCWFEVRG 180          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.886e-23
Identity = 53/151 (35.10%), Postives = 80/151 (52.98%), Query Frame = 3
Query:  270 GESMGPGLGD---IPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 713
            GE + PG      +PE C++ +  + +P + C  A ++  F  A SSD VW+  LP  Y+ L+      R     K+  FAL   PV  +DG K  WL++ +G+ C+ +S+K + IT      YW WI   ESRF+ +A L  + WFE+ G
Sbjct:   51 GEIVSPGTSPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSR---SRVFASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFNKIAELLDVCWFEIRG 198          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.859e-21
Identity = 50/142 (35.21%), Postives = 79/142 (55.63%), Query Frame = 3
Query:  291 LGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 713
            L D+PE CV+ +  + +P + C LA ++  F  A  SD VWE  +P  Y+ L+      ++L  SKK++ FAL  + V  DDG K +W+++   + C+ IS   +AI      + W WIP  ++RF  VA L ++  FE+ G
Sbjct:   36 LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFL--SKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAELLEVCLFEIRG 175          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: PP2B6_ARATH (Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.419e-20
Identity = 59/175 (33.71%), Postives = 92/175 (52.57%), Query Frame = 3
Query:  222 KLKIEMGASLSSLTDNGESMGPGLG----------DIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDG 713
            K++  +G+S      + ES+G G G          D+PE C++ +  + +P ++C  A ++ +F  A   DS+WE  LPS Y+ L+   PP R  + SKKD+ F L   PV  +DG K  WL+  +G+ C+ ++ K + ITG  +  YW WI   ES F  V  L     F++ G
Sbjct:   12 KIRQVLGSSSKVQKHDVESIGGGGGEIVPGHSPFDDLPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLI---PPWRVFS-SKKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIELCESSFEKVPELLNNRSFQMGG 182          
The following BLAST results are available for this feature:
BLAST of FC878215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
P2A15_ARATH3.541e-8881.62F-box protein PP2-A15 OS=Arabidopsis thaliana GN=P... [more]
P2A12_ARATH1.076e-5255.00F-box protein PP2-A12 OS=Arabidopsis thaliana GN=P... [more]
P2A11_ARATH2.931e-5052.22F-box protein PP2-A11 OS=Arabidopsis thaliana GN=P... [more]
P2A13_ARATH7.219e-4951.58F-box protein PP2-A13 OS=Arabidopsis thaliana GN=P... [more]
P2A14_ARATH1.558e-4347.09F-box protein PP2-A14 OS=Arabidopsis thaliana GN=P... [more]
P2B10_ARATH5.566e-2537.23F-box protein PP2-B10 OS=Arabidopsis thaliana GN=P... [more]
PP2B2_ARATH4.712e-2438.36Putative F-box protein PP2-B2 OS=Arabidopsis thali... [more]
FB95_ARATH8.886e-2335.10F-box protein At2g02240 OS=Arabidopsis thaliana GN... [more]
PP2B8_ARATH2.859e-2135.21Putative F-box protein PP2-B8 OS=Arabidopsis thali... [more]
PP2B6_ARATH1.419e-2033.71Putative F-box protein PP2-B6 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878215 ID=FC878215; Name=FC878215; organism=Citrus clementina; type=EST; length=787bp
ATTAAATAGAAAAATAAAAATATCGAACACGAGTCGCACACAGCACGCTC
TTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCTCTCTCTC
TCGCTTTATCCTTCAGTCTCTTCTCCACCATGACGACGAGTTAGGCATAA
GCAACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTT
TGGTAAATTCAGTAAAGTAATAAATTAAAAATAGAAATGGGGGCGTCGCT
ATCGAGCCTGACCGACAACGGAGAGAGCATGGGGCCGGGACTGGGAGACA
TACCGGAGAGCTGCGTGGCGTGCGTGTTCATGTACTTGACGCCGCCGGAG
ATTTGCAATCTCGCCAGATTAAACCACGCTTTCCGCGGTGCGGCGTCGTC
TGATTCCGTGTGGGAAAACAAGCTCCCTTCTAACTATCAAGATCTGCTCG
ATTTGATGCCTCCTGAACGCTACCTTAACTTGTCCAAAAAAGACATTTTT
GCCCTCCTCTCCCGCCCGGTTCCCTTCGATGATGGCAATAAGGAAGTGTG
GTTAGATAGAGTGACGGGAAGAGTTTGCTTGTCAATATCAACAAAGGCTA
TGGCAATCACCGGAATTGAGGATCGCAGATATTGGAATTGGATTCCCACT
GAAGAATCAAGATTCCATGTGGTGGCGTATTTGCAACAAATATGGTGGTT
CGAGGTGGATGGGGTAGTGAAGTTTCCACTTCCTGCTGATGTCTACACCG
TGTCATTCAGGCTTCATCTTGGAAGATTTGCCAAGAG
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