FC878216

Overview
NameFC878216
Unique NameFC878216
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length887
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6835 contig Ccv1_Contig6835:1..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878216 vs. ExPASy Swiss-Prot
Match: VSR4_ARATH (Vacuolar-sorting receptor 4 OS=Arabidopsis thaliana GN=VSR4 PE=2 SV=2)

HSP 1 Score: 428.328 bits (1100), Expect = 2.776e-119
Identity = 199/234 (85.04%), Postives = 217/234 (92.74%), Query Frame = 2
Query:  185 SRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCIN 886
            +RFVVEKNSL VTSPE IKG+HDSAIGNFGIPQYGGSMAG V YPKEN+K C+EF DF ISFK++PGALP F+LVDRGDCFFALKVWNAQKAGASAVLVAD+++E LITMDTPEED+SSAKYIENITIPSAL+ K FGE LKKA+SGG+MVN+NLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLM FVK+F+G AQILEKGG+TQF PHYITWYCP  FTLSRQCKSQCIN
Sbjct:   24 ARFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGSMAGTVVYPKENQKSCKEFSDFSISFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEEDVSSAKYIENITIPSALVTKGFGEKLKKAISGGDMVNLNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGFTQFRPHYITWYCPHAFTLSRQCKSQCIN 257          
BLAST of FC878216 vs. ExPASy Swiss-Prot
Match: VSR3_ARATH (Vacuolar-sorting receptor 3 OS=Arabidopsis thaliana GN=VSR3 PE=2 SV=1)

HSP 1 Score: 428.328 bits (1100), Expect = 2.776e-119
Identity = 199/234 (85.04%), Postives = 217/234 (92.74%), Query Frame = 2
Query:  185 SRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCIN 886
            +RFVVEKNSL VTSPE IKG+HDSAIGNFGIPQYGGSMAG V YPKEN+K C+EF DF ISFK++PGALP F+LVDRGDCFFALKVWNAQKAGASAVLVAD+++E LITMDTPEED+SSAKYIENITIPSAL+ K FGE LKKA+SGG+MVN+NLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLM FVK+F+G AQILEKGG+TQF PHYITWYCP  FTLSRQCKSQCIN
Sbjct:   24 ARFVVEKNSLSVTSPESIKGTHDSAIGNFGIPQYGGSMAGTVVYPKENQKSCKEFSDFSISFKSQPGALPTFLLVDRGDCFFALKVWNAQKAGASAVLVADNVDEPLITMDTPEEDVSSAKYIENITIPSALVTKGFGEKLKKAISGGDMVNLNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMEFVKDFKGAAQILEKGGFTQFRPHYITWYCPHAFTLSRQCKSQCIN 257          
BLAST of FC878216 vs. ExPASy Swiss-Prot
Match: VSR1_PEA (Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP80 PE=1 SV=1)

HSP 1 Score: 417.542 bits (1072), Expect = 4.901e-116
Identity = 199/236 (84.32%), Postives = 214/236 (90.68%), Query Frame = 2
Query:  179 SVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCIN 886
            S +RFVVEKNSL VTSPEKIKG HDSAIGNFGIPQYGGSMAG V YPK+N KGC+   DF  SFK++PGALP  +L+DRG CFFALKVWNAQKAGASAVLVADDIEE LITMDTPEED+SSAKYIENITIPSALI KSFGE LK A+SGG+MVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDML+ F+K+F+G AQILEKGGYTQFTPHYITWYCP  FTLS+QCKSQCIN
Sbjct:   20 STARFVVEKNSLSVTSPEKIKGKHDSAIGNFGIPQYGGSMAGNVVYPKDNSKGCK---DFDSSFKSRPGALPTILLLDRGSCFFALKVWNAQKAGASAVLVADDIEEPLITMDTPEEDVSSAKYIENITIPSALIGKSFGEKLKDAISGGDMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLIEFLKDFKGAAQILEKGGYTQFTPHYITWYCPHAFTLSKQCKSQCIN 252          
BLAST of FC878216 vs. ExPASy Swiss-Prot
Match: VSR1_ARATH (Vacuolar-sorting receptor 1 OS=Arabidopsis thaliana GN=VSR1 PE=1 SV=2)

HSP 1 Score: 367.081 bits (941), Expect = 7.596e-101
Identity = 165/239 (69.04%), Postives = 200/239 (83.68%), Query Frame = 2
Query:  170 VHTSVSRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCIN 886
            ++ ++ RFVVEKN+L VTSP+ IKG ++ AIGNFG+PQYGG++ G V YPK N+K C+ + DF ISFK+KPG LP FVL+DRGDC+F LK W AQ+AGA+A+LVAD   E LITMDTPEED S A Y++NITIPSALI K+ G+++K ALSGG+MVN+ LDW E+VPHPD+RVEYELWTNSNDECG KCD  + F+K F+G AQILEKGG+TQFTPHYITWYCP  FTLS+QCKSQCIN
Sbjct:   14 LNLAMGRFVVEKNNLKVTSPDSIKGIYECAIGNFGVPQYGGTLVGTVVYPKSNQKACKSYSDFDISFKSKPGRLPTFVLIDRGDCYFTLKAWIAQQAGAAAILVADSKAEPLITMDTPEEDKSDADYLQNITIPSALITKTLGDSIKSALSGGDMVNMKLDWTESVPHPDERVEYELWTNSNDECGKKCDTQIEFLKNFKGAAQILEKGGHTQFTPHYITWYCPEAFTLSKQCKSQCIN 252          
BLAST of FC878216 vs. ExPASy Swiss-Prot
Match: VSR2_ARATH (Vacuolar-sorting receptor 2 OS=Arabidopsis thaliana GN=VSR2 PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 1.062e-94
Identity = 154/233 (66.09%), Postives = 191/233 (81.97%), Query Frame = 2
Query:  188 RFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCIN 886
            RFVVEKN+L VTSPE I+G ++ A+GNFG+PQYGGSM+GAV YPK N+K C+ F DF ISF+++   LP FVLVDRGDC+F LK WNAQ+AGA+ +LVAD+  E LITMD PE++ S A Y++NITIPSAL+ +S G  +K A++ G+ V+++LDWREA+PHP+DRV YELWTNSNDECG KCD  + F+K F+G AQILEKGGYT+FTPHYITWYCP  F  SRQCK+QCIN
Sbjct:   24 RFVVEKNNLRVTSPESIRGVYECALGNFGVPQYGGSMSGAVVYPKTNQKACKNFDDFEISFRSRVAGLPTFVLVDRGDCYFTLKAWNAQRAGAATILVADNRPEQLITMDAPEDETSDADYLQNITIPSALVSRSLGSAIKTAIAHGDPVHISLDWREALPHPNDRVAYELWTNSNDECGSKCDAQIRFLKRFKGAAQILEKGGYTRFTPHYITWYCPEAFLASRQCKTQCIN 256          
BLAST of FC878216 vs. ExPASy Swiss-Prot
Match: VSR7_ARATH (Vacuolar-sorting receptor 7 OS=Arabidopsis thaliana GN=VSR7 PE=2 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 7.392e-80
Identity = 138/234 (58.97%), Postives = 173/234 (73.93%), Query Frame = 2
Query:  185 SRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCIN 886
            +RFVVEK S+ V +PE+++  HD +I NFG+P YGG + G+V YP     GC  FG    +FK K    P  +L+DRG C+FALK W+AQ+AGA+AVLVAD+++E L+TMD+PEE   +  +IE +TIPS LIDKSFG+ L++    G+ + + LDWRE+VPHPD RVEYELWTNSNDECG +CD  M FVK F+G AQILEKGGYT FTPHYITW+CP  F  S  CKSQCIN
Sbjct:   26 ARFVVEKESISVLNPEEMRSKHDGSIANFGLPDYGGFLIGSVVYPDSKTDGCSAFGK---TFKPK-FPRPTILLLDRGGCYFALKAWHAQQAGAAAVLVADNVDEPLLTMDSPEESKDADGFIEKLTIPSVLIDKSFGDDLRQGFQKGKNIVIKLDWRESVPHPDKRVEYELWTNSNDECGARCDEQMDFVKNFKGHAQILEKGGYTAFTPHYITWFCPFQFINSPHCKSQCIN 255          
BLAST of FC878216 vs. ExPASy Swiss-Prot
Match: VSR6_ARATH (Vacuolar-sorting receptor 6 OS=Arabidopsis thaliana GN=VSR6 PE=2 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 4.484e-77
Identity = 133/233 (57.08%), Postives = 172/233 (73.82%), Query Frame = 2
Query:  188 RFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCIN 886
            RF+VEK+S+ + +P  ++  HD+AI NFG+P YGG M G+V Y  +   GC  F     +FK K    P  +++DRG+C+FALKVWN Q++G +AVLVAD+++E LITMD+PEE   +  +IE + IPSALID SF  TLK+AL  GE V + +DW E++PHPD+RVEYELWTN+NDECG +CD  M FVK F+G AQILEKGGY+ FTPHYITW+CP  +  S QCKSQCIN
Sbjct:   26 RFIVEKSSVTILNPLAMRSKHDAAIANFGVPNYGGYMIGSVVYAGQGAYGCDSFDK---TFKPK-FPRPTILIIDRGECYFALKVWNGQQSGVAAVLVADNVDEPLITMDSPEESKEADDFIEKLNIPSALIDFSFANTLKQALKKGEEVVLKIDWSESLPHPDERVEYELWTNTNDECGARCDEQMNFVKNFKGHAQILEKGGYSLFTPHYITWFCPKDYVSSNQCKSQCIN 254          
BLAST of FC878216 vs. ExPASy Swiss-Prot
Match: VSR5_ARATH (Vacuolar-sorting receptor 5 OS=Arabidopsis thaliana GN=VSR5 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 2.156e-71
Identity = 128/234 (54.70%), Postives = 170/234 (72.65%), Query Frame = 2
Query:  185 SRFVVEKNSLMVTSPEKIKGSHDSAIGNFGIPQYGGSMAGAVTYPKENRKGCREFGDFGISFKAKPGALPNFVLVDRGDCFFALKVWNAQKAGASAVLVADDIEEALITMDTPEEDISSAKYIENITIPSALIDKSFGETLKKALSGGEMVNVNLDWREAVPHPDDRVEYELWTNSNDECGVKCDMLMAFVKEFRGPAQILEKGGYTQFTPHYITWYCPMTFTLSRQCKSQCIN 886
            SRF VEK+SL V +  ++   HD+AI NFG+P+YGG M G+V Y  ++  GC  F     +F  K    P  +L+DRG C FALK+WN Q++GA+AVL+AD+I E LITMDTP+++     +I+ + IPSALI +SFG++LKKAL  GE V + +DW E++P+PD+RVEYELW N+NDECGV CD  + F+K F+G AQILEKGGYT F PHYI+W CP    LS+QC++QCIN
Sbjct:   26 SRFFVEKSSLTVLNSWEMGAKHDAAIANFGLPKYGGFMIGSVVYAGQDAYGCNSFNK---TFNTK-SPYPKILLIDRGVCNFALKIWNGQQSGAAAVLLADNIVEPLITMDTPQDE--DPDFIDKVKIPSALILRSFGDSLKKALKRGEEVILKMDWSESIPNPDERVEYELWANTNDECGVHCDKQIDFIKNFKGMAQILEKGGYTLFRPHYISWVCPKELLLSKQCRTQCIN 253          
The following BLAST results are available for this feature:
BLAST of FC878216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VSR4_ARATH2.776e-11985.04Vacuolar-sorting receptor 4 OS=Arabidopsis thalian... [more]
VSR3_ARATH2.776e-11985.04Vacuolar-sorting receptor 3 OS=Arabidopsis thalian... [more]
VSR1_PEA4.901e-11684.32Vacuolar-sorting receptor 1 OS=Pisum sativum GN=BP... [more]
VSR1_ARATH7.596e-10169.04Vacuolar-sorting receptor 1 OS=Arabidopsis thalian... [more]
VSR2_ARATH1.062e-9466.09Vacuolar-sorting receptor 2 OS=Arabidopsis thalian... [more]
VSR7_ARATH7.392e-8058.97Vacuolar-sorting receptor 7 OS=Arabidopsis thalian... [more]
VSR6_ARATH4.484e-7757.08Vacuolar-sorting receptor 6 OS=Arabidopsis thalian... [more]
VSR5_ARATH2.156e-7154.70Vacuolar-sorting receptor 5 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA6DF11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DF11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878216 ID=FC878216; Name=FC878216; organism=Citrus clementina; type=EST; length=887bp
CCCCAACTGAAGCTGAAACTGAAACTTACCCACTTACATGTTCTAATCAT
TTGATCCAAAAATCCCAAATCCCCACCAAATCTTTGTCATTGTTTTTTTG
ACAAAAATGGAGTCACACGGCTCAATAACTTTGAAGCTCTTTCTGGGGTT
TCTGATTTTGTCCTTAAATGTTCATACTTCGGTGTCGAGATTTGTCGTCG
AGAAAAACAGCTTGATGGTGACGTCACCGGAGAAGATTAAAGGGTCTCAC
GACAGTGCGATTGGCAACTTTGGGATTCCGCAATATGGGGGAAGCATGGC
GGGAGCTGTGACGTATCCTAAGGAGAATCGAAAGGGCTGCAGGGAATTTG
GTGACTTCGGGATTTCGTTTAAGGCCAAGCCTGGAGCTTTGCCCAATTTC
GTTTTGGTCGATCGTGGAGATTGCTTCTTTGCCTTGAAGGTCTGGAATGC
CCAAAAGGCTGGTGCTTCTGCAGTGCTTGTTGCAGATGACATTGAGGAAG
CATTAATAACAATGGACACACCTGAAGAGGATATTTCGTCAGCAAAATAC
ATTGAAAATATAACTATACCATCTGCACTTATTGATAAAAGTTTTGGTGA
AACATTAAAGAAAGCACTCAGTGGTGGGGAAATGGTCAATGTGAATCTTG
ATTGGAGAGAAGCTGTTCCACACCCTGATGATCGCGTGGAGTATGAGTTA
TGGACCAACAGCAATGACGAATGTGGGGTTAAATGTGACATGTTGATGGC
ATTTGTGAAGGAATTTAGGGGTCCAGCACAGATACTTGAGAAAGGTGGCT
ACACTCAGTTCACCCCCCATTATATAACTTGGTACTGTCCTATGACGTTC
ACCTTAAGCAGGCAGTGCAAGTCTCAGTGCATCAACC
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