FC878218
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_SPIOL (30S ribosomal protein S5, chloroplastic OS=Spinacia oleracea GN=rps5 PE=1 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 2.785e-69 Identity = 149/287 (51.92%), Postives = 178/287 (62.02%), Query Frame = 3 Query: 132 RLPKLTLSTVLVRASESDKPN----------------------GIVFDDFNNPDEDAAVFXXXXXXXXXXXXXSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 R+P +T L+ S S KP I F + +NPDE+ F + DE P E+E+EIA AYEELYG AY+G S+LGNDVY MDSK KK + FG K+KKEK++DGFEE ++FRAI QK+AVDARRNI+TVPMTKYLTFPHR++ D+GAA+VMLRPAAPGTGVIAGGAVR VLEMAGVENALGKQLGSNNALNNARAT+VAVQ M+Q+ +V+R+RG PMEE Sbjct: 20 RIPLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITFFEQDNPDEEIT-FDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKATGFGSKSKKEKIRDGFEENVVQVRRVTKVVKGGKHMRFRAIVVVGDKKGQVGVGVGKAKEVVSAVQKAAVDARRNIITVPMTKYLTFPHRNEADYGAARVMLRPAAPGTGVIAGGAVRTVLEMAGVENALGKQLGSNNALNNARATIVAVQTMRQFSDVARDRGIPMEE 305
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_ARATH (30S ribosomal protein S5, chloroplastic OS=Arabidopsis thaliana GN=rps5 PE=1 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 2.785e-69 Identity = 148/258 (57.36%), Postives = 171/258 (66.28%), Query Frame = 3 Query: 153 STVLVRASESDKPNGIVFDDFNNPDEDAAVFXXXXXXXXXXXXXSFDELPMETEDEIAAAYEELYGPAYAGVSVLGNDVYVMDSKAKKTSAFG-KTKKEKVKDGFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 S LV+AS +D I F+D VF FDE ETE+EIA A+EELYGPAY+G S+LG D+YVMDSK KK+S G K KK+K++DGFEE LKFRAI QKSA+DARRNIV VPMTKY TFPHRS+GD+GAAKVMLRPA+PGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARAT+ AVQ+M+Q+R+V++ERG PMEE Sbjct: 44 SLTLVKASSTDTET-IFFEDETPEITANVVFDPPIAPEGFVSPPYFDEGSDETEEEIATAFEELYGPAYSGESMLGKDIYVMDSKHKKSSGIGGKPKKDKIRDGFEERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIVQVPMTKYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATLAAVQQMRQFRDVAQERGIPMEE 300
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_PORYE (30S ribosomal protein S5, chloroplastic OS=Porphyra yezoensis GN=rps5 PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.709e-26 Identity = 68/164 (41.46%), Postives = 94/164 (57.32%), Query Frame = 3 Query: 432 KTKKEKVKD-GFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920 K K K KD G+EE L FR I +K DA++++VTVP+TK + PH +G GAAKV+LRP+APG+GVIAGG+VR VLE++GV+N L KQLGSNN LNNARA + + +++ + E +++RG P+E Sbjct: 6 KQSKGKDKDSGWEERVVQVKRVTKVVKGGKKLSFRVILVIGNEQGQVGVGVGKASDVIGAVKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAKVILRPSAPGSGVIAGGSVRTVLELSGVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPIE 169
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_PORPU (30S ribosomal protein S5, chloroplastic OS=Porphyra purpurea GN=rps5 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.808e-26 Identity = 67/164 (40.85%), Postives = 94/164 (57.32%), Query Frame = 3 Query: 432 KTKKEKVKD-GFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920 K K K KD G+EE L FR I +K DA++++VTVP+TK + PH +G GAA+V+LRP+APG+GVIAGG+VR VLE++GV+N L KQLGSNN LNNARA + + +++ + E +++RG P+E Sbjct: 6 KQGKSKEKDNGWEERVVQVKRVTKVVKGGKKLSFRVILVVGNEQGQVGVGVGKASDVIGAVKKGVTDAKKHLVTVPLTKSNSIPHPINGISGAAQVILRPSAPGSGVIAGGSVRTVLELSGVQNILAKQLGSNNTLNNARAVLNGLTQLRTFSEAAKDRGVPIE 169
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNP2 (30S ribosomal protein S5 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsE PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.974e-26 Identity = 60/103 (58.25%), Postives = 79/103 (76.70%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920 +K DA++++V VP+TK T HR +G G AKVM+RPAAPGTGVIAGGAVR VLE+AGV+N L KQLGS++ LNNARATV A+ ++ + V++ERG +E Sbjct: 67 RKGVSDAKKHVVDVPLTKTNTITHRINGVAGGAKVMMRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSSSPLNNARATVDALGNLRSFSSVAQERGVSIE 169
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_NOSP7 (30S ribosomal protein S5 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rpsE PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.496e-26 Identity = 57/103 (55.34%), Postives = 76/103 (73.79%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920 +K D +++++ +P+TK + PH DG G AKV++RPAAPGTGVIAGGAVR VLE+AGV N L KQLGSNN LNNARA V A+ ++ EV+ +RG P++ Sbjct: 69 KKGVADGKKHLIDIPITKSNSIPHPIDGVGGGAKVIMRPAAPGTGVIAGGAVRTVLELAGVRNVLAKQLGSNNPLNNARAAVNALSTLRTLSEVAEDRGIPIQ 171
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_ANAVT (30S ribosomal protein S5 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsE PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.496e-26 Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D +++++ +P+TK + PH DG G AKVM+RPAAPGTGVIAGGAVR VLE+AGV N L KQLGSNN LNNARA V A+ ++ EV+ +RG +E+ Sbjct: 68 KKGVADGKKHLIDIPITKSNSIPHPIDGVGGGAKVMMRPAAPGTGVIAGGAVRTVLELAGVRNVLAKQLGSNNPLNNARAAVNALSTLRTLAEVAEDRGIAIEK 171
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_ANASP (30S ribosomal protein S5 OS=Anabaena sp. (strain PCC 7120) GN=rpsE PE=3 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 6.496e-26 Identity = 58/104 (55.77%), Postives = 76/104 (73.08%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D +++++ +P+TK + PH DG G AKVM+RPAAPGTGVIAGGAVR VLE+AGV N L KQLGSNN LNNARA V A+ ++ EV+ +RG +E+ Sbjct: 68 KKGVADGKKHLIDIPITKSNSIPHPIDGVGGGAKVMMRPAAPGTGVIAGGAVRTVLELAGVRNVLAKQLGSNNPLNNARAAVNALSTLRTLAEVAEDRGIAIEK 171
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_CYAP7 (30S ribosomal protein S5 OS=Cyanothece sp. (strain PCC 7424) GN=rpsE PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 1.108e-25 Identity = 55/103 (53.40%), Postives = 78/103 (75.73%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920 +K D ++ ++ VP+TK + PH ++G G A V++RPAAPGTGVIAGGAVR VLE+AGV+N L KQLGS+N LNNARA + A++ ++ + EV++ER P+E Sbjct: 67 RKGVADGKKQLIEVPLTKASSIPHLTNGASGGASVIMRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSDNPLNNARAAINALETLRTFSEVAKERDVPLE 169
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_THEEB (30S ribosomal protein S5 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsE PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.447e-25 Identity = 56/103 (54.37%), Postives = 79/103 (76.70%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920 +K D +++++ VP+TK + PH + G+ GAA+VM+RPAAPGTGVIAGG+VR VLE+AGV N L KQLGS+N LNNARA + A+ ++ ++EV+ ER P+E Sbjct: 67 RKGVADGKKHLIDVPITKSNSIPHPTFGEGGAARVMIRPAAPGTGVIAGGSVRTVLELAGVRNVLAKQLGSSNPLNNARAALEALAALRTFQEVAEEREIPIE 169 The following BLAST results are available for this feature:
BLAST of FC878218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878218 ID=FC878218; Name=FC878218; organism=Citrus clementina; type=EST; length=924bpback to top |