FC878238

Overview
NameFC878238
Unique NameFC878238
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length863
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYA1_ARATH (Nuclear transcription factor Y subunit A-1 OS=Arabidopsis thaliana GN=NFYA1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.803e-28
Identity = 91/257 (35.41%), Postives = 121/257 (47.08%), Query Frame = 2
Query:  140 MPAKPD-ENRQLDRGAQSVSQSAIYSQQPWWXXXXXXXXXXXXXXXXXXREQ----PNGSVVNGA-TYSQDG-INGQEHAHLKHIPSSTPLTMGER--LEQNSQM---------------ELVGHSIVLTSYPYTDPQHVGVITPYVPQVMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQL---NDNAANSAEKGMNSGADGSK 829
            M +KP  EN +      +V Q  +Y++ PWW                         PNGS  N   + S+DG +NG+     K   ++T     +   +E N                  ELVGH I     PY DP + G++  Y  Q +      GM + R           VYVNAKQY GILRRR++RAKAELE+KVI+ RKPYLHESRH+HAMRRAR  GGRF    ++    D      E+G  + + GS+
Sbjct:    1 MQSKPGRENEEEVNNHHAVQQPMMYAE-PWWKNNSFGVVPQARPSGIPSNSSSLDCPNGSESNDVHSASEDGALNGENDGTWKDSQAATSSRSVDNHGMEGNDPALSIRNMHDQPLVQPPELVGHYIACVPNPYQDPYYGGLMGAYGHQQLGFRPYLGMPRERTALPLDMAQEPVYVNAKQYEGILRRRKARAKAELERKVIRDRKPYLHESRHKHAMRRARASGGRFAKKSEVEAGEDAGGRDRERGSATNSSGSE 256          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYA9_ARATH (Nuclear transcription factor Y subunit A-9 OS=Arabidopsis thaliana GN=NFYA9 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.495e-26
Identity = 70/140 (50.00%), Postives = 87/140 (62.14%), Query Frame = 2
Query:  428 ELVGHSIV-LTSYPYTDPQHVGVITPYVPQVMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDNAA-NSAEKGMNSGADGSKGSTN 841
            +LVGH++   +S PY DP + GV+  Y    +      GM  +R           V+VNAKQY+ ILRRRQ+RAKAELEKK+IK+RKPYLHESRHQHAMRR RG GGRF   K+ N  A+   AE+  N     S  S+N
Sbjct:  113 QLVGHTVGWASSNPYQDPYYAGVMGAYGHHPLGFVPYGGMPHSRMPLPPEMAQEPVFVNAKQYQAILRRRQARAKAELEKKLIKSRKPYLHESRHQHAMRRPRGTGGRF--AKKTNTEASKRKAEEKSNGHVTQSPSSSN 250          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYA7_ARATH (Nuclear transcription factor Y subunit A-7 OS=Arabidopsis thaliana GN=NFYA7 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.308e-25
Identity = 64/139 (46.04%), Postives = 85/139 (61.15%), Query Frame = 2
Query:  440 HSIVLTSYPYTDPQHVGVITPYV-PQVMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDNAANSA--EKGMNSGADGSKGSTNGT 847
            +S+    YPY DP +  +  P   P   +  QL G+ Q             V+VNAKQY GILRRRQSRA+ E + KVIK+RKPYLHESRH HA+RR RGCGGRFLN K+ +++  +S+  EK   S    +  +++GT
Sbjct:   51 NSMAPGQYPYPDPYYRSIFAPPPQPYTGVHLQLMGVQQQGVPLPSDAVEEPVFVNAKQYHGILRRRQSRARLESQNKVIKSRKPYLHESRHLHAIRRPRGCGGRFLNAKKEDEHHEDSSHEEKSNLSAGKSAMAASSGT 189          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYA4_ARATH (Nuclear transcription factor Y subunit A-4 OS=Arabidopsis thaliana GN=NFYA4 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.222e-24
Identity = 72/177 (40.68%), Postives = 95/177 (53.67%), Query Frame = 2
Query:  341 NGQEHAHLKHIPSSTPLTM-----GERLEQNS-QMELVGHSIVLTSYPYTDPQHVGVITP--YVPQVM--IPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDNAANSAEKGMNSGADGSKGSTN 841
            N + HA  +   S T   +      E ++ NS   E + H +    YPY DP +  V     Y+P     +  QL GM Q             V+VNAKQY GILRRRQSRAK E   + IKA+KPY+HESRH HA+RR RGCGGRFLN K+  +N  +  E+   S  + S+ S++
Sbjct:   11 NNESHAKKERPDSQTRPQVPSGRSSESIDTNSVYSEPMAHGL----YPYPDPYYRSVFAQQAYLPHPYPGVQLQLMGMQQPGVPLQCDAVEEPVFVNAKQYHGILRRRQSRAKLEARNRAIKAKKPYMHESRHLHAIRRPRGCGGRFLNAKK--ENGDHKEEEEATSDENTSEASSS 181          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYA3_ARATH (Nuclear transcription factor Y subunit A-3 OS=Arabidopsis thaliana GN=NFYA3 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.954e-21
Identity = 56/117 (47.86%), Postives = 73/117 (62.39%), Query Frame = 2
Query:  458 SYPYTDPQHVGVITP-YVPQV-MIPPQLYGMHQARXXXXXXXXXXX-VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDNAANSAEK 799
            S+ Y DP + G++   Y+PQ     PQ+  M   R            V+VNAKQY  I+RRRQ RAK E + K+I+ARKPYLHESRH HA++R RG GGRFLNTK+L   +  +A +
Sbjct:  134 SFHYADPHYGGLLAATYLPQAPTCNPQMVSMIPGRVPLPAELTETDPVFVNAKQYHAIMRRRQQRAKLEAQNKLIRARKPYLHESRHVHALKRPRGSGGRFLNTKKLLQESEQAAAR 250          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYA2_ARATH (Nuclear transcription factor Y subunit A-2 OS=Arabidopsis thaliana GN=NFYA2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.687e-21
Identity = 59/128 (46.09%), Postives = 79/128 (61.72%), Query Frame = 2
Query:  449 VLTSYPYTDPQHVGVITPYVPQ--VMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAE--LEKKVI--KARKPYLHESRHQHAMRRARGCGGRFLNTKQLN-DNAANSAEKGMNS 811
            + T YPY + Q+ GV++ Y  Q  VM+P  +                  +YVN+KQY GI+RRRQSRAKA   L++K +  + RKPY+H SRH HA+RR RG GGRFLNTK  N +N+  +A+KG  S
Sbjct:  101 IYTKYPYGEQQYYGVVSAYGSQSRVMLPLNM------------ETEDSTIYVNSKQYHGIIRRRQSRAKAAAVLDQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRFLNTKSQNLENSGTNAKKGDGS 216          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYA5_ARATH (Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana GN=NFYA5 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.267e-20
Identity = 48/91 (52.75%), Postives = 63/91 (69.23%), Query Frame = 2
Query:  590 VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDNAANSAEKGMNSGADGSKGSTNGTGSVDS 862
            ++VNAKQY  ILRRR+ RAK E + K+IK RKPYLHESRH HA++RARG GGRFLNTK+L +++ +     M +G + S     G   + S
Sbjct:  180 IFVNAKQYHAILRRRKHRAKLEAQNKLIKCRKPYLHESRHLHALKRARGSGGRFLNTKKLQESSNSLCSSQMANGQNFSMSPHGGGSGIGS 270          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYA8_ARATH (Nuclear transcription factor Y subunit A-8 OS=Arabidopsis thaliana GN=NFYA8 PE=2 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 56/110 (50.91%), Postives = 71/110 (64.55%), Query Frame = 2
Query:  458 SYPYTDPQHVGVITP--YVPQVMI-PPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDN 778
            S+ Y DP H G + P  Y+PQ  I  PQ+  +               V+VNAKQ+  I+RRRQ RAK E + K+IKARKPYLHESRH HA++R RG GGRFLNTK+L ++
Sbjct:  132 SFHYADP-HFGGLMPAAYLPQATIWNPQMTRV----PLPFDLIENEPVFVNAKQFHAIMRRRQQRAKLEAQNKLIKARKPYLHESRHVHALKRPRGSGGRFLNTKKLQES 236          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYA6_ARATH (Nuclear transcription factor Y subunit A-6 OS=Arabidopsis thaliana GN=NFYA6 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.023e-18
Identity = 48/91 (52.75%), Postives = 61/91 (67.03%), Query Frame = 2
Query:  500 PYVPQVMIP-PQLYGMHQARXXXXXXXXXXX-VYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQ 766
            PY  Q  +  PQ+ G+  +R            ++VNAKQY+ ILRRR+ RAK E + K+IK RKPYLHESRH HA++R RG GGRFLNTK+
Sbjct:  141 PYASQHTVQHPQIRGLVPSRMPLPHNIPENEPIFVNAKQYQAILRRRERRAKLEAQNKLIKVRKPYLHESRHLHALKRVRGSGGRFLNTKK 231          
BLAST of FC878238 vs. ExPASy Swiss-Prot
Match: NFYAA_ARATH (Nuclear transcription factor Y subunit A-10 OS=Arabidopsis thaliana GN=NFYA10 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.642e-18
Identity = 57/133 (42.86%), Postives = 79/133 (59.40%), Query Frame = 2
Query:  446 IVLTSYPYTDPQHVGVITPYVPQ-----VMIPPQLYGMHQARXXXXXXXXXXXVYVNAKQYRGILRRRQSRAKAELEKKVIKARKPYLHESRHQHAMRRARGCGGRFLNTKQLNDNAANSAEKGMNSGADGSK 829
            ++ T +P+ + Q+ GV++ Y  Q     VMIP ++                  +YVN+KQY GI+RRRQSRAKAE   K+ + RKPY+H SRH HAMRR RG GGRFLNTK      A++A++   S +  S+
Sbjct:   95 MMYTKHPHVE-QYYGVVSAYGSQRSSGRVMIPLKMETEEDGT-----------IYVNSKQYHGIIRRRQSRAKAE---KLSRCRKPYMHHSRHLHAMRRPRGSGGRFLNTK-----TADAAKQSKPSNSQSSE 207          
The following BLAST results are available for this feature:
BLAST of FC878238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
NFYA1_ARATH4.803e-2835.41Nuclear transcription factor Y subunit A-1 OS=Arab... [more]
NFYA9_ARATH4.495e-2650.00Nuclear transcription factor Y subunit A-9 OS=Arab... [more]
NFYA7_ARATH1.308e-2546.04Nuclear transcription factor Y subunit A-7 OS=Arab... [more]
NFYA4_ARATH3.222e-2440.68Nuclear transcription factor Y subunit A-4 OS=Arab... [more]
NFYA3_ARATH1.954e-2147.86Nuclear transcription factor Y subunit A-3 OS=Arab... [more]
NFYA2_ARATH5.687e-2146.09Nuclear transcription factor Y subunit A-2 OS=Arab... [more]
NFYA5_ARATH1.267e-2052.75Nuclear transcription factor Y subunit A-5 OS=Arab... [more]
NFYA8_ARATH2.161e-2050.91Nuclear transcription factor Y subunit A-8 OS=Arab... [more]
NFYA6_ARATH2.023e-1852.75Nuclear transcription factor Y subunit A-6 OS=Arab... [more]
NFYAA_ARATH2.642e-1842.86Nuclear transcription factor Y subunit A-10 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA74DE03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA74DE03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878238 ID=FC878238; Name=FC878238; organism=Citrus clementina; type=EST; length=863bp
CTTAAGGTTGCAGAGAAATACAGACTAAACTAAAACGAATCAAAGTCGGT
GACTTTCTTTTAGAATCTCTATGCTCTGCTTCTCATCTCACAGTGCAGGA
TTAGGCTGTTTATACTATTAGAGGATTAGGTTGTGAATGATGCCGGCAAA
ACCTGATGAAAATCGGCAGTTAGACCGTGGTGCTCAGAGTGTCTCGCAAT
CAGCTATCTATTCCCAGCAGCCTTGGTGGAGTGGGACAGGAACTGGTGCC
TCCTTAGCTGAAGCAGCAGCTTCTAAATCTTCAAGGGAACAACCAAATGG
TTCTGTTGTAAATGGTGCCACCTATTCACAAGATGGGATTAATGGACAAG
AACATGCGCATCTCAAACATATTCCATCCTCAACACCTCTAACTATGGGC
GAACGCCTTGAACAAAATTCCCAAATGGAGCTAGTTGGTCACTCAATTGT
TTTGACATCATATCCATATACAGATCCACAACATGTTGGAGTAATTACCC
CCTATGTGCCACAAGTTATGATTCCTCCTCAGTTATATGGAATGCATCAA
GCAAGAATGCCTTTGCCTCTCGAAATGGAAGAGGAGCCTGTTTATGTGAA
TGCAAAACAGTATAGAGGTATTTTGAGACGAAGACAGTCGCGTGCTAAGG
CTGAGCTTGAAAAGAAAGTGATTAAAGCGAGAAAGCCTTATCTTCATGAG
TCCAGACATCAACATGCAATGAGAAGGGCTAGGGGTTGTGGAGGCCGTTT
TCTCAATACTAAGCAGCTCAATGACAATGCTGCAAACTCTGCAGAAAAAG
GTATGAATTCTGGTGCAGACGGTTCAAAGGGGTCCACCAATGGTACTGGT
TCTGTGGACTCAT
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