FC878354

Overview
NameFC878354
Unique NameFC878354
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10696 contig Ccv1_Contig10696:545..1396. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGD3_ARATH (ADP-ribosylation factor GTPase-activating protein AGD3 OS=Arabidopsis thaliana GN=AGD3 PE=1 SV=1)

HSP 1 Score: 372.089 bits (954), Expect = 2.216e-102
Identity = 191/272 (70.22%), Postives = 208/272 (76.47%), Query Frame = 1
Query:   37 HYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            H HGGVHDEKS ARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQ PE+ LP SPM                        EE+  ER+    Y+E             K EKPID LR+VCGND+CADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVI+LFQ+LGN FAN+VWEELL SRSA H D   P L  SDK ++++ GKPS++D IS+KEK+I AKY
Sbjct:  363 HGHGGVHDEKSVARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQVPEQRLPGSPMGSGHHRSASESSSYESSEYDHPTTEEFVCERSFLG-YNERPSRSFQPQRSIRKGEKPIDALRKVCGNDKCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQALGNTFANTVWEELLHSRSAIHFD---PGLTVSDKSRVMVTGKPSYADMISIKEKYIQAKY 630          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGD1_ARATH (ADP-ribosylation factor GTPase-activating protein AGD1 OS=Arabidopsis thaliana GN=AGD1 PE=2 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 1.141e-90
Identity = 177/274 (64.60%), Postives = 192/274 (70.07%), Query Frame = 1
Query:   37 HYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVE--EYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            HYHGGVHDEK  ARHTVNLLTSTIKVDADQ+DLRFCFRIISPTK YTLQAE+A DQMDWIEKITGVIASLLS Q PER +                             E  E T E  +T   +             VK+EKPIDVL RV GN+RCADCGAPEPDWASLNLGVL+CIECSG+HRNLGVHISKVRSLTLDVKVWEPSV+TLFQSLGN + NSVWEELL S S            KSD+P+ LL+ KP  +D ISVKE FIHAKY
Sbjct:  358 HYHGGVHDEKPVARHTVNLLTSTIKVDADQTDLRFCFRIISPTKVYTLQAENAQDQMDWIEKITGVIASLLSFQTPERAIMRLSTVDGGDTFSASDSGSLADPYDIEQAESGESTVEHPMTGG-NRSRFSGCLQQHDMVKTEKPIDVLTRVLGNERCADCGAPEPDWASLNLGVLICIECSGIHRNLGVHISKVRSLTLDVKVWEPSVLTLFQSLGNVYVNSVWEELLNSESRTSSASRSSGTPKSDRPRKLLVRKPGFNDPISVKELFIHAKY 630          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGD2_ARATH (ADP-ribosylation factor GTPase-activating protein AGD2 OS=Arabidopsis thaliana GN=AGD2 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.833e-54
Identity = 124/294 (42.18%), Postives = 159/294 (54.08%), Query Frame = 1
Query:   37 HYHGGVHDEKSAA------RHT------------VNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSS----QAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            HY+ G+ +  S        RH             ++L TS IK+DA+ +DLR CFRIISP K YTLQAE+  D+MDW+ KIT  I   L+S    Q+P R L                             E+Y    N+                     +  + +LR + GN+ CA+C AP+PDWASLNLGVL+CIECSGVHRNLGVHISKVRSLTLDVKVWEP+++ LF++LGN + NSVWEELL      H+D       K     L  + KPS  D  ++KEK+I+ KY
Sbjct:  336 HYYSGLGEHSSGVFGRFRTRHNRSASQGSLDCNMIDLRTSLIKLDAEDTDLRLCFRIISPQKTYTLQAENGADRMDWVNKITAAITIRLNSHFLQQSPARYLDKKNTSSGPATENLTLNQK----------EDYNQRLNV--------------------GDDVLTILREIPGNNTCAECNAPDPDWASLNLGVLMCIECSGVHRNLGVHISKVRSLTLDVKVWEPTILDLFRNLGNGYCNSVWEELLH-----HLD---DDSEKGSTDTLASVSKPSSEDWFTLKEKYINGKY 591          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: AGD4_ARATH (ADP-ribosylation factor GTPase-activating protein AGD4 OS=Arabidopsis thaliana GN=AGD4 PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.747e-52
Identity = 123/275 (44.73%), Postives = 153/275 (55.64%), Query Frame = 1
Query:   37 HYHGGVHDEKSAARHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDV---LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            H   G   E S   +T++L TS IK+DA+  DLR CFRIISP K YTLQAE+  D+MDW+ KIT  I +LL+S      L  SP+                          Y  + N +SA                +     DV   LR + GN+ CA+C APEPDWASLNLGVL+CI+CSGVHRNLGVHISKVRSL+LDVKVWEP+++ LF++LGN + NS+WE LL      H+D                + KP   DS SVKEK+I  KY
Sbjct:  354 HNRSGSLTEGSLGYNTIDLRTSLIKLDAEDMDLRLCFRIISPQKTYTLQAENGADRMDWVNKITKAIGTLLNSHF----LQQSPV-------------------------RYLDKDNSSSAPANAVVSGDQIRHNDSRQNIGDDVSTILRGLPGNNACAECNAPEPDWASLNLGVLLCIQCSGVHRNLGVHISKVRSLSLDVKVWEPTILDLFRNLGNVYCNSLWEGLL------HLD---DDCEDGSALSHASVSKPCPEDSFSVKEKYILGKY 590          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ACAP3_HUMAN (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 3 OS=Homo sapiens GN=ACAP3 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 1.051e-27
Identity = 71/190 (37.37%), Postives = 98/190 (51.58%), Query Frame = 1
Query:  136 RFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWE 705
            RFCF ++SPTK+  LQA+S   +  W++ +   IAS    ++P+ C                                 TS  +  +   E            VK E  +  ++ V GN +C DCG P+P WAS+NLGVL+CIECSG+HR+LGVH SKVRSLTLD   WEP ++ L   LGN+  N ++E
Sbjct:  329 RFCFEVLSPTKSCMLQADSEKLRQAWVQAVQASIASAYR-ESPDSCYSER---------------------LDRTASPSTSSIDSATDTRERG----------VKGESVLQRVQSVAGNSQCGDCGQPDPRWASINLGVLLCIECSGIHRSLGVHCSKVRSLTLD--SWEPELLKLMCELGNSAVNQIYE 484          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ACAP1_MOUSE (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1 OS=Mus musculus GN=Acap1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.678e-25
Identity = 83/261 (31.80%), Postives = 115/261 (44.06%), Query Frame = 1
Query:   88 NLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDV------LRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +L   T+K+  D S+ RFCF ++S +K+  LQA+S      W+  +   IAS  S QA     P  P                                   S YH              +  +   V      ++ V GN +C DC  P P+WAS+NLGV +CI+CSG+HR+LGVH SKVRSLTLD   WEP ++ L   LGN   N ++E  +++                     + + KP  S S   KE +IHAKY
Sbjct:  311 DLRLCTVKLCPD-SERRFCFEVVSTSKSCFLQADSERLLQLWVSAVQSSIASAFS-QAHLENSPRGP--------------------------------GQVSGYHAPGSAATLACGGAARGRESGGVGQVAAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLD--SWEPELVKLMCELGNVIINQIYEARVEA---------------------MAVKKPGPSCSRQEKEAWIHAKY 514          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ACAP2_CHICK (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Gallus gallus GN=ACAP2 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.165e-24
Identity = 75/255 (29.41%), Postives = 109/255 (42.75%), Query Frame = 1
Query:   88 NLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQSRSAFHVDLTPPSLHKSDKPQLLLMGKPSHSDSISVKEKFIHAKY 852
            +L   T+K   +  + RFCF ++SPTK+  LQA+S   +  WI+ +   IA+    +                                   +E   +   +S                +K E  +  ++ + GN  C DCG  +P WAS+NLG+ +CIECSG+HR+LGVH SKVRSLTLD   WEP ++ L   LGN   N ++E  L+                        + KP        KE +I AKY
Sbjct:  312 DLRLCTVK-HCEDIERRFCFEVVSPTKSCMLQADSEKLRQAWIKAVQTSIATAYREKG----------------------------------DESEKQEKKSSPSTGSLESGSETKEKLLKGESALQRVQCIPGNAACCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLD--SWEPELLKLMCELGNDVINRIYEAKLEKMG---------------------VKKPQPGSQRQEKEMYIKAKY 508          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ACAP2_RAT (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Rattus norvegicus GN=Acap2 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.134e-24
Identity = 70/210 (33.33%), Postives = 100/210 (47.62%), Query Frame = 1
Query:   88 NLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQ 717
            +L   T+K   +  + RFCF ++SPTK+  LQA+S   +  WI+ +   IA+    +  E                                +   S  +L S                +K E  +  ++ + GN  C DCG  +P WAS+NLG+ +CIECSG+HR+LGVH SKVRSLTLD   WEP ++ L   LGN   N V+E  L+
Sbjct:  312 DLRLCTVK-HCEDIERRFCFEVVSPTKSCMLQADSEKLRQAWIKAVQTSIATAYREKGDES--------------------------EKLDKKSSPSTGSLDSGSESKEKL--------LKGESALQRVQCIPGNTSCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLD--TWEPELLKLMCELGNDVINRVYEAKLE 484          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ACAP2_MOUSE (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Mus musculus GN=Acap2 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 4.134e-24
Identity = 70/210 (33.33%), Postives = 100/210 (47.62%), Query Frame = 1
Query:   88 NLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWEELLQ 717
            +L   T+K   +  + RFCF ++SPTK+  LQA+S   +  WI+ +   IA+    +  E                                +   S  +L S                +K E  +  ++ + GN  C DCG  +P WAS+NLG+ +CIECSG+HR+LGVH SKVRSLTLD   WEP ++ L   LGN   N V+E  L+
Sbjct:  312 DLRLCTVK-HCEDIERRFCFEVVSPTKSCMLQADSEKLRQAWIKAVQTSIATAYREKGDES--------------------------EKLDKKSSPSTGSLDSGNESKEKL--------LKGESALQRVQCIPGNTSCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLD--TWEPELLKLMCELGNDVINRVYEAKLE 484          
BLAST of FC878354 vs. ExPASy Swiss-Prot
Match: ACAP2_RABIT (Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 2 OS=Oryctolagus cuniculus GN=ACAP2 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.209e-24
Identity = 70/206 (33.98%), Postives = 98/206 (47.57%), Query Frame = 1
Query:   88 NLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQAPERCLPTSPMXXXXXXXXXXXXXXXXXXXXXXXVEEYTSERNLTSAYHEXXXXXXXXXXXCVKSEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVITLFQSLGNAFANSVWE 705
            +L   T+K   +  + RFCF ++SPTK+  LQA+S   +  WI+ +   IA+    +  E                                +   S  +L S                +K E  +  ++ V GN  C DCG  +P WAS+NLG+ +CIECSG+HR+LGVH SKVRSLTLD   WEP ++ L   LGN   N V+E
Sbjct:  312 DLRLCTVK-HCEDIERRFCFEVVSPTKSCMLQADSEKLRQAWIKAVQTSIATAYREKGDES--------------------------EKLDKKSSPSTGSLDSGNESKEKL--------LKGESALQRVQCVPGNASCCDCGLADPRWASINLGITLCIECSGIHRSLGVHFSKVRSLTLD--TWEPELLKLMCELGNDVINRVYE 480          
The following BLAST results are available for this feature:
BLAST of FC878354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
AGD3_ARATH2.216e-10270.22ADP-ribosylation factor GTPase-activating protein ... [more]
AGD1_ARATH1.141e-9064.60ADP-ribosylation factor GTPase-activating protein ... [more]
AGD2_ARATH3.833e-5442.18ADP-ribosylation factor GTPase-activating protein ... [more]
AGD4_ARATH2.747e-5244.73ADP-ribosylation factor GTPase-activating protein ... [more]
ACAP3_HUMAN1.051e-2737.37Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP1_MOUSE1.678e-2531.80Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP2_CHICK3.165e-2429.41Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP2_RAT4.134e-2433.33Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP2_MOUSE4.134e-2433.33Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]
ACAP2_RABIT9.209e-2433.98Arf-GAP with coiled-coil, ANK repeat and PH domain... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA58BH12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA58BH12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878354 ID=FC878354; Name=FC878354; organism=Citrus clementina; type=EST; length=852bp
CTTGGTTCTGGACTGTTGAGTCGGTGGCTCTCTTCTCATTATCATGGTGG
AGTACATGATGAAAAATCTGCTGCTCGTCATACAGTGAACTTGCTTACAT
CAACAATCAAAGTTGATGCTGACCAATCAGACCTGAGGTTTTGTTTCAGA
ATCATTTCCCCTACAAAAAACTATACTTTGCAGGCAGAGAGTGCTCTGGA
TCAGATGGATTGGATTGAAAAGATAACAGGGGTTATTGCTTCATTACTTA
GTTCTCAGGCTCCTGAGAGGTGTCTGCCTACTAGTCCTATGGGAAGTGGC
CATCATCGATCAGCTAGTGACAGTAGTTCATTTGAAAGTTCTGACTTTGA
TCATGCTGCCGTTGAAGAATATACATCTGAGAGGAATCTTACAAGTGCAT
ATCATGAACGTCAATCGAGAGGTTCACAACAGCAGCGCTCATGTGTAAAA
AGTGAGAAGCCAATTGATGTGCTGCGAAGAGTATGTGGGAATGATAGATG
TGCTGATTGTGGGGCACCTGAACCTGATTGGGCGTCTTTAAACCTTGGTG
TTCTTGTTTGTATCGAATGCTCTGGTGTCCACCGAAATCTTGGTGTGCAC
ATATCAAAGGTCAGGTCACTAACCCTTGATGTAAAAGTATGGGAGCCATC
TGTTATAACTCTGTTTCAGTCTCTGGGCAATGCTTTTGCAAACTCAGTCT
GGGAGGAATTATTGCAATCAAGAAGTGCCTTTCATGTTGATCTTACTCCC
CCAAGCTTGCACAAGTCTGATAAACCACAGTTGCTTCTTATGGGCAAACC
TAGTCACTCTGATTCTATATCAGTGAAGGAAAAGTTCATCCATGCAAAGT
AT
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