FC878469

Overview
NameFC878469
Unique NameFC878469
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length901
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11449 contig Ccv1_Contig11449:12..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878469 vs. ExPASy Swiss-Prot
Match: Y5957_ARATH (Uncharacterized protein At5g39570 OS=Arabidopsis thaliana GN=At5g39570 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.231e-47
Identity = 130/287 (45.30%), Postives = 151/287 (52.61%), Query Frame = 1
Query:  109 ITLTYGRPLPPSDETCYPSSSASDGDFDYARPKFSSHSEPSAYADEALNNEYSSYARPKXXXXXXXXXXXXXXXXXXXXXXXAYGFQPGMGRPEPYGSGRPESEYASG--------YAKRPDSQEYGSGYGKRPESE-EYGSGYGRKPDSEVHGSGYGRRPESG-ESGFGGRTESEYGGS-AYGRKPEYESGYGQKPEYESGYGGKPGY-ESGYGSKPEFESGYGRKPEY------------ESGYGSKPEFESGYGRKPEYESGYGSKHDDGVGYGSKPHESGYGR 897
            IT+ YGRP+PPSDETCYP SS  D DF+Y RP+F+   EPSAY DEALN EYSSY+RPK                        YG + G GR       +PESEY SG        Y +RP+ Q YGSGYG R E+E EYGSG G + + E     YGRRPESG  SG+GGR+ESEY    +YGR  E E GY +KP Y      + GY +  YG   E E GY RKP Y            +  YG   E E G  RKP Y      + DD V    KP    YGR
Sbjct:   28 ITVIYGRPIPPSDETCYPLSSGVDDDFEYERPEFTQIHEPSAYGDEALNTEYSSYSRPK-PRPAFRPDSGGGGHVQGERPNPGYGSESGYGR-------KPESEYGSGYGGQTEVEYGRRPE-QSYGSGYGGRTETESEYGSGGGGRTEVE-----YGRRPESGLGSGYGGRSESEYERKPSYGRSEEQEEGY-RKPSYGRSEEQEEGYRKPSYGRSEEQEEGY-RKPSYGRSEEEQEEGYRKPSYGRSEEQEEGSYRKPSY-----GRSDDQVESYIKP---SYGR 290          
BLAST of FC878469 vs. ExPASy Swiss-Prot
Match: IF2_CLOPH (Translation initiation factor IF-2 OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=infB PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.194e-16
Identity = 55/187 (29.41%), Postives = 88/187 (47.06%), Query Frame = 1
Query:  394 YGSGRPESEYASGYAKRPDSQEYGSGYGKRPESEEYGSGYGRKPDSEVHGSGYGRRPESGESGFGGRTESEYGGSAYGRKPEYESGYGQKPEYESGYGG-KPGYESGYGS-KPEFESGYG-----------RKPEYESGYGSKPEFESGYGRKPEYESGYGSKHDDGVGYG------SKPHESGYGR 897
            YG  RP+ +    Y  RP  Q     YG RP+ +  GS   R+P  +     YG R   G+  +G R + +  GS   R+P+ +  YG +P+ +  YG  +PG +  YG  +P+ +  YG           R+P+ + GYG +P+ +  YG +P+ + GY  +      +G       K  +SGY R
Sbjct:  288 YGDRRPQGQ--GSYGDRPQGQ---GSYGDRPQGQ--GSYGDRRPQGQ---GSYGDRRPQGQGSYGDRPQGQ--GSYGDRRPQGQGSYGDRPQGQGNYGDRRPGGQGSYGDRRPQGQGSYGDRPQGQGNFGDRRPQGQGGYGGRPQGQGSYGGRPQGQGGYAGRSQGQGSFGGFNKDFDKDKDSGYTR 462          

HSP 2 Score: 72.0182 bits (175), Expect = 5.192e-12
Identity = 49/167 (29.34%), Postives = 81/167 (48.50%), Query Frame = 1
Query:  355 AYGFQP-GMGRPEPYGSGRPESEYASGYAKRPDSQEYGSGYGKRPESE-EYGS-------GYGRKPDSEVHGSGYGRRPESGESGFGGRTESEYGGSAYGRKPEYESGYG-QKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGS-----KPEFESGYGR 810
            +YG +P G G    YG  RP+ + + G  +RP  Q     YG RP+ +  YG         YG +P  +     YG R   G+  +G R     G  +YG +P+ +  +G ++P+ + GYGG+P  +  YG +P+ + GY  + + +  +G        + +SGY R
Sbjct:  308 SYGDRPQGQGS---YGDRRPQGQGSYG-DRRPQGQ---GSYGDRPQGQGSYGDRRPQGQGSYGDRPQGQ---GNYGDRRPGGQGSYGDRRPQ--GQGSYGDRPQGQGNFGDRRPQGQGGYGGRPQGQGSYGGRPQGQGGYAGRSQGQGSFGGFNKDFDKDKDSGYTR 462          

HSP 3 Score: 68.9366 bits (167), Expect = 4.395e-11
Identity = 52/192 (27.08%), Postives = 81/192 (42.19%), Query Frame = 1
Query:  379 GRPEPYGSGRPESEYASGY----AKRPDSQEYGSGYGKRPESEEYGSGYGRKPDSEVHGSGYG-RRPESGESGFGGRTESEYGGSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSK-PEFESGYG-RKPEYESGYGSKPEFESGYGRKPEYESGYGSKHDDGVG------------YGSKPHESG-YG 894
            G   PY   RP+ + +         RP  Q  G    +RP + +   G G   D    G   G RRP +G+   G   +  YG     R+P+ +  YG +       G +P  +  YG + P+ +  YG R+P+ +  YG +P+ +  YG +P+ +  YG +   G G            YG +P   G YG
Sbjct:  174 GDRRPYNGDRPQGQNSGDRRPYNGDRPQGQNSGD---RRPYNGDRPQGQGNYGDRRPQGQNSGDRRPYNGDRPQG---QGNYGD----RRPQGQGSYGDR---RPNSGDRPQGQGNYGDRRPQGQGSYGDRRPQGQGSYGDRPQGQGSYGDRPQGQGSYGDRRPQGQGSYGDRRPQGQGSYGDRPQGQGSYG 352          
BLAST of FC878469 vs. ExPASy Swiss-Prot
Match: HORN_HUMAN (Hornerin OS=Homo sapiens GN=HRNR PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 3.975e-12
Identity = 58/179 (32.40%), Postives = 81/179 (45.25%), Query Frame = 1
Query:  379 GRPEPYGSGRPESEYASGYAKRPDSQEYGSGYGKRPESEEYGSGYGRKPDSEVHGSGYGRRPESGESGFGGRTESEYG--GSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGSKPEFESGYGRK--PEYESGYGSKHDDGVGYGSK--PHESGYGR 897
            G+   +G     S  +SGY ++      GSG G+ P   + GSG  + P    HGSG GR   SG+ G G    S +G   S+ G+   Y S +G    + SGY G+ G  SG  S+ E      R       +GS     SG+GR+     +S    +H  G+G+ S    H SG GR
Sbjct: 1567 GQSSSHGQHGSGSSQSSGYGRQ------GSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESSGFGHHESSSGQSSSY-SQHGSGSGHSSGY-GQHGSRSGQSSRGERHGSSSRSSSRYGQHGSGSRQSSGHGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSGR 1737          

HSP 2 Score: 71.2478 bits (173), Expect = 8.856e-12
Identity = 59/182 (32.42%), Postives = 82/182 (45.05%), Query Frame = 1
Query:  379 GRPEPYGSGRPESEYASGYAKRPDSQEYGSGYGKRPESEEYGSGYGRKPDSEVHGSGYGRRPESGESGFGGRTESEYG--GSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGSKPEFESGYGRKPEYESGYG-----SKHDDGVGYGSK--PHESGYGR 897
            G+   +G     S  +SGY ++      GSG G+ P   + GSG  + P    HGSG GR   SG+ G G    S +G   S+ G+   Y S +G    + SGY G+ G  SG  S+ E          +   +GS     SG+GR+    SG G      +H  G+G+ S    H SG GR
Sbjct: 1097 GQSSSHGQHGSGSSQSSGYGRQ------GSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESSGFGHHESSSGQSSSY-SQHGSGSGHSSGY-GQHGSRSGQSSRGERHGSSSGSSSHYGQHGSGSRQSSGHGRQ---GSGSGHSPSRGRHGSGLGHSSSHGQHGSGSGR 1267          

HSP 3 Score: 71.2478 bits (173), Expect = 8.856e-12
Identity = 57/179 (31.84%), Postives = 81/179 (45.25%), Query Frame = 1
Query:  379 GRPEPYGSGRPESEYASGYAKRPDSQEYGSGYGKRPESEEYGSGYGRKPDSEVHGSGYGRRPESGESGFGGRTESEYG--GSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGSKPEFESGYGRK--PEYESGYGSKHDDGVGYGSK--PHESGYGR 897
            G+   +G     S  +SGY ++      GSG G+ P   + GSG  + P    HGSG GR   SG+ G G    S +G   S+ G+   Y S +G    + SGY G+ G  SG  S+ E          +   +GS     SG+GR+     +S    +H  G+G+ S    H SG GR
Sbjct: 2507 GQSSSHGQHGSGSSQSSGYGRQ------GSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGSGLGESSGFGHHESSSGQSSSY-SQHGSGSGHSSGY-GQHGSRSGQSSRGERHGSSSGSSSHYGQHGSGSRQSSGHGRQGSGSGQSPSRGRHGSGLGHSSSHGQHGSGSGR 2677          

HSP 4 Score: 69.707 bits (169), Expect = 2.577e-11
Identity = 61/186 (32.80%), Postives = 80/186 (43.01%), Query Frame = 1
Query:  379 GRPEPYGSGRPESEYASGYAKRPDSQEYGSGYGKRPESEEYGSGYGRKPDSEVHGSGYGRRPESGESGFGGRTESEYG-GSAYGRKPEYE---SGYGQKPEYESGYGGKPGYES---GYGSKPEFESGYGRKPEYESGYGSKP-----EFESGYGRKPEYESGYGSKHDDGVGYGSK--PHESGYG 894
            G+   YG     S +ASG  +      +GSG G+ P   + GSG G+ P    HGSG GR   SG  G G    S +G  S+ G+   Y    SG G    YE  +G + G  S    +GS     S YG     + G GS+      +  SG G+ P    G   +H  G G  S   P+ SG G
Sbjct:  862 GQSSSYGQHESASHHASGRGR------HGSGSGQSPGHGQRGSGSGQSPSYGRHGSGSGRSSSSGRHGSGSGQSSGFGHKSSSGQSSGYTQHGSGSGHSSSYEQ-HGSRSGQSSRSEQHGSSSGSSSSYG-----QHGSGSRQSLGHGQHGSGSGQSPSPSRG---RHGSGSGQSSSYGPYRSGSG 1032          

HSP 5 Score: 69.3218 bits (168), Expect = 3.365e-11
Identity = 64/198 (32.32%), Postives = 83/198 (41.92%), Query Frame = 1
Query:  367 QPGMGRPEPYGSGRPESE--YASGYAKRPDSQEYGSGYGKRPESEEYGSGYGRKPDSEVHGSGYGRRPESGESGFGGRTESEYGGSAYGRKPEYESGYGQKPEYESGYGGKPGY---ESGYGSKP---EFESGYGRKPE---YESGYGSKPEFESGYGR---KPEYESGY-----GSKHDDGVG-YGSKPHESGYGRK 900
            Q G G    Y  G  ES     SG+ +        SGY K      +GSG G       HGS  G+   SG+ G   R  S YG   +     + SG GQ   + SG G  PG+    SG G  P   +  +G+GR      Y SG G    + SG+G      E+ SGY     GS H  G G +GS+  +S  G +
Sbjct:  324 QHGSGSSYSYSRGHYESGSGQTSGFGQHESGSGQSSGYSK------HGSGSGHSSSQGQHGSTSGQASSSGQHGSSSRQSSSYG--QHESASRHSSGRGQ---HSSGSGQSPGHGQRGSGSGQSPSSGQHGTGFGRSSSSGPYVSGSG----YSSGFGHHESSSEHSSGYTQHGSGSGHSSGHGQHGSRSGQSSRGER 506          

HSP 6 Score: 67.781 bits (164), Expect = 9.792e-11
Identity = 59/182 (32.42%), Postives = 80/182 (43.96%), Query Frame = 1
Query:  379 GRPEPYGSGRPESEYASGYAKRPDSQEYGSGYGKRPESEEYGSGYGRKPDSEVHGSGYGRRPESGESGFGGRTESEYG--GSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGSKPEFESGYGRKPEYESGYG-----SKHDDGVGYGSK--PHESGYGR 897
            G+   +G     S  +SGY ++      GSG G+ P   + GSG  + P    HGSG GR   SG+ G G    S +G   S+ G+   Y S +G    + SGY G+ G  SG  S+ E              +GS     SG+GR+    SG G      +H  G G+ S    H SG GR
Sbjct: 2037 GQSSSHGQHGSGSSQSSGYGRQ------GSGSGQSPGHGQRGSGSRQSPSYGRHGSGSGRSSSSGQHGPGLGESSGFGHHESSSGQSSSY-SQHGSGSGHSSGY-GQHGSRSGQSSRGERHGSSSGSSSRYGQHGSGSRQSSGHGRQ---GSGSGHSPSRGRHGSGSGHSSSHGQHGSGSGR 2207          
BLAST of FC878469 vs. ExPASy Swiss-Prot
Match: IF2_DESRM (Translation initiation factor IF-2 OS=Desulfotomaculum reducens (strain MI-1) GN=infB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.157e-11
Identity = 62/192 (32.29%), Postives = 85/192 (44.27%), Query Frame = 1
Query:  370 PGMGRPEPYGSGRPESEYASGYAKRPDSQEYGSG----YGKRPESEEYGSGYGRKPDSEVHGSGYGRRPESGESGFGGRTESEYGGSAYGRKPEYESG--YGQKPEYESG--YGGKP--GYESGYGSKPEFESG--YGRKPEYESGYGSKPEFESGYGRKPEYESG--YGSKHDDGVG--YGSKPHESGYGR 897
            P  G  +  G GRP++    G   RP       G    YG RP+  + G  YG +P     G  YG RP+ G+    G       G  YG +P+   G  YG +P+   G  YG +P  G    YG +P+   G  YG +P+   G  S+P     YG +P+   G  YG +   G G  YG +P + G GR
Sbjct:  138 PRQGSAQQSGQGRPQANRPQGSQGRPYGGRPQGGQSRPYGDRPQGGQ-GRPYGDRPQGG-QGRPYGDRPQGGQGRPYGDRPQGGQGRPYGDRPQGGQGRPYGDRPQGGQGRPYGDRPQGGQSRPYGDRPQGGQGRPYGDRPQ---GGQSRP-----YGDRPQGGQGRPYGDRPQGGQGRHYGDRP-QGGQGR 318          
BLAST of FC878469 vs. ExPASy Swiss-Prot
Match: KRA62_MOUSE (Keratin-associated protein 6-2 OS=Mus musculus GN=Krtap6-2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.511e-11
Identity = 68/149 (45.64%), Postives = 74/149 (49.66%), Query Frame = 1
Query:  460 YGSGYGKRPESEEYGSGYGRKPDSEVHGSGYGRRPESGE-SGFGGRTESEYG---GSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGSKPEFESGYGRKPEYESGYGSKHDDGVGYGSKPHESGYG 894
            YG GYG       YGSGYG    S  +G GYG     G  SG+G  + S YG   GS YG    Y SGYG    Y SGYG   GY SGYG    + SGYG    Y SGYG    + SGYG    Y SGYGS +  G G G      GYG
Sbjct:   12 YGCGYGSG-----YGSGYGCGSGSG-YGCGYGSGYGCGYGSGYGCGSGSGYGCGYGSGYGCG--YGSGYGCG--YGSGYGC--GYGSGYGCG--YGSGYGCG--YGSGYGCG--YGSGYGCG--YGSGYGSGYGSGYGSGC---GCGYG 137          

HSP 2 Score: 70.0922 bits (170), Expect = 1.973e-11
Identity = 78/175 (44.57%), Postives = 81/175 (46.29%), Query Frame = 1
Query:  394 YGSGRPESEYASGYAKRPDSQE---YGSGYGKRPESEEYGSGYGRKPDSEVHGSGYGRRPESGESGFGGRTESEYG---GSAYGRKPEYESGYGQKPEYESGYGGKPGYESGYGSKPEFESGYGRKPEYESGYGSKPEFESGYGRKPEYESGYGSKHDDGVGYGSKPHES--GYG 894
            YGSG     Y SGY     S     YGSGYG       YGSGYG    S  +G GYG       SG+G    S YG   GS YG    Y SGYG    Y SGYG   GY SGYG    + SGYG    Y SGYG      SGYG      SGYGS    G GYGS       GYG
Sbjct:   16 YGSG-----YGSGYGCGSGSGYGCGYGSGYGCG-----YGSGYGCGSGSG-YGCGYG-------SGYGCGYGSGYGCGYGSGYGCG--YGSGYGCG--YGSGYGC--GYGSGYGC--GYGSGYG--CGYGSGYG------SGYG------SGYGS--GCGCGYGSYYRSGCCGYG 148          
BLAST of FC878469 vs. ExPASy Swiss-Prot
Match: FUS_BOVIN (RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.497e-11
Identity = 74/235 (31.49%), Postives = 99/235 (42.13%), Query Frame = 1
Query:  355 AYGFQPGMGRPE----PYG-------------SGRPESEYA--------SGYAKRPDSQEYGS--GYGKRPESEE-YGS-----GYGRKP---------DSEVHGSGYGRRPESG----ESGFGGRTESEYGGSAYGRKPEYE--SGYGQKPEYESGYGGKPGYESGYG-SKPEFESGYGRKPEYESGYGSKPEFESGYGRKPEYESGYGSKHDDGVGY-----GSKPHESGYGR 897
            AY  QPG G  +    PYG             SG  +S Y+        +GY+ +   Q Y S  GYG    S+  YG      GYG++P          S    SGYG+ P+ G    +SG+GG+ +S      YG++  Y    GYGQ+ +Y S  GG  G    YG  +P   SG G       GYG++ +   GYG   +   G G     G GY     G +P   G GR
Sbjct:   16 AYPTQPGQGYSQQSNQPYGQQSYGGYGQSTDTSGYGQSSYSGSYGQTQNTGYSTQSAPQGYSSAGGYGSSQSSQSSYGQQSSYPGYGQQPAPSGTSGSYGSSSQSSGYGQ-PQGGGYGQQSGYGGQQQS------YGQQQSYNPPQGYGQQSQYNSSGGGGGGGGGSYGQDQPSMSSGGG-----GGGYGNQDQ-SGGYGGGQQDRGGRG--RGGGGGYNRSSGGYEPRGRGGGR 235          
The following BLAST results are available for this feature:
BLAST of FC878469 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
Y5957_ARATH2.231e-4745.30Uncharacterized protein At5g39570 OS=Arabidopsis t... [more]
IF2_CLOPH1.194e-1629.41Translation initiation factor IF-2 OS=Clostridium ... [more]
HORN_HUMAN3.975e-1232.40Hornerin OS=Homo sapiens GN=HRNR PE=1 SV=2[more]
IF2_DESRM1.157e-1132.29Translation initiation factor IF-2 OS=Desulfotomac... [more]
KRA62_MOUSE1.511e-1145.64Keratin-associated protein 6-2 OS=Mus musculus GN=... [more]
FUS_BOVIN7.497e-1131.49RNA-binding protein FUS OS=Bos taurus GN=FUS PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA56DA03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56DA03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878469 ID=FC878469; Name=FC878469; organism=Citrus clementina; type=EST; length=901bp
CAAAATCGCGATCGGAACAGAGAAACAATGCCGTACTACGCTGACAATGA
CGATGACGTTACTGATTTCGACGATTACGATCCAACACCCTACGATGGTG
GATACGACATCACTTTGACTTACGGCCGTCCTCTGCCACCGTCCGATGAG
ACTTGTTACCCATCATCGTCGGCGTCAGATGGTGACTTCGACTACGCTCG
TCCCAAGTTCTCGTCGCACTCGGAGCCTTCAGCCTACGCTGACGAAGCTC
TCAATAACGAGTACAGCTCCTACGCCCGACCAAAGCCTCGTCCCGGTTTC
GTACCCGGGTCAGGGGGTGGGTCGGGTTATGGAGGAAGGCCCCAGCCGCA
GCCGGCTTATGGGTTTCAGCCTGGAATGGGAAGGCCCGAACCTTATGGGT
CGGGGAGGCCCGAATCTGAATATGCTTCTGGGTATGCGAAGAGGCCTGAT
TCGCAGGAATATGGATCTGGGTACGGAAAGAGACCCGAGTCGGAGGAATA
TGGATCTGGGTACGGCAGGAAACCTGATTCCGAGGTGCATGGCTCTGGAT
ATGGGCGGAGACCGGAGTCGGGTGAATCCGGATTTGGTGGTAGGACTGAG
TCCGAGTATGGAGGATCAGCGTATGGACGAAAACCCGAATATGAGTCCGG
TTATGGCCAGAAACCGGAATATGAATCTGGCTATGGTGGAAAACCAGGGT
ACGAGTCTGGATATGGAAGCAAACCCGAATTTGAATCCGGATATGGTAGG
AAACCCGAGTACGAGTCTGGGTATGGCAGCAAGCCGGAATTTGAATCCGG
CTATGGTAGGAAACCCGAGTATGAGTCTGGCTACGGGAGTAAGCATGATG
ATGGGGTCGGCTATGGGAGTAAGCCCCATGAATCTGGCTATGGGCGTAAA
C
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