FC878488

Overview
NameFC878488
Unique NameFC878488
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length968
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878488_ssr101 microsatellite FC878488_ssr101:101..115. BLAST: Citrus ESTs to Prunus persica proteins V1
FC878488_ssr895 microsatellite FC878488_ssr895:895..909. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2382 contig Ccv1_Contig2382:1..968. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1B1_ARATH (PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 6.097e-46
Identity = 100/193 (51.81%), Postives = 116/193 (60.10%), Query Frame = 3
Query:   57 MATPATLPISNXXXXXXXXXXXXXXXXXXXXFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 635
            MATP TLP++N                    FR F SRLS+SIR G SQRR W+EL+DR++M+RP+SL +A SRIRKNL+YFKVNYV                         G W+FLYLFRPSDQP+V+FGRTFSDRE                  GSLL SALM+G AIVC HGAF VP+DLFLDEQEP N
Sbjct:    1 MATPPTLPVTNQQAVQSQPPINTPA------FRTFFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPAN 187          
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1B3_ARATH (PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.040e-45
Identity = 104/193 (53.89%), Postives = 114/193 (59.07%), Query Frame = 3
Query:   57 MATPATLPISNXXXXXXXXXXXXXXXXXXXXFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 635
            MA P TLPIS+                    FR FLSRLSSSIR   SQRR W ELVDR+A+SRP+SL +AYSRIR+NL YFKVNYVT                         AWIFLYLFRPSDQP+V+ GRTFSDRE                  GSLL SALM+G  IVC HGAFRVPEDLFLD+QEP N
Sbjct:    2 MANPPTLPISDHSGGGSQSQQPVSTPA----FRTFLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPAN 190          
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1B2_ARATH (PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.406e-42
Identity = 95/192 (49.48%), Postives = 113/192 (58.85%), Query Frame = 3
Query:   60 ATPATLPISNXXXXXXXXXXXXXXXXXXXXFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 635
            ++PA LP++N                    FR FLSRLSSS+R   SQRR W ELVDR++ +RPDSL +++SRIRKNL+YFKVNY                          G+W+FLYLFR SDQP+VLFGR+FSDRE                  GSLL SAL +G AIVC HGAFRVP+DLFLDEQEP N
Sbjct:    3 SSPAILPVTNQQAATQSQPPINSHA-----FRTFLSRLSSSLRESLSQRRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEPAN 189          
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1B4_ARATH (PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.931e-40
Identity = 78/160 (48.75%), Postives = 106/160 (66.25%), Query Frame = 3
Query:  150 FRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEP 629
            FR F+++++ +++ G S+RR W+EL DR+A+S+P+S+++A  RIRKN SYFKVNY+T                         +W+FLYLFRP+DQP+VLFGRTFSDRE                  GS+L+SA+M+G A++CAHGAFR PEDLFLDEQEP
Sbjct:   36 FRNFINQITETVKNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDEQEP 195          
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1B5_ARATH (PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.992e-34
Identity = 72/158 (45.57%), Postives = 98/158 (62.03%), Query Frame = 3
Query:  153 RAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQE 626
            RAF++ ++ ++  G S+ R WSEL+DR+A ++PDSL+EA +R RKN SYF+VNYV                          +W+FLYLFRPSD+P++LFGR+FS+ E                  GS+LISALM+G A +C HGAFR P+DLFLDEQ+
Sbjct:   37 RAFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLFLDEQD 194          
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1B6_ARATH (PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.837e-32
Identity = 73/160 (45.62%), Postives = 92/160 (57.50%), Query Frame = 3
Query:  153 RAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPI 632
            R  LSR+ +++R+  +  R W+ELVDR+A SRP SL+EA SR+RKN SYF+ NY+T                         +W+FLY FRP+DQP+V+ GRTFSD E                  GSLL+S L VG   V  HGAFR PEDLFL+EQE I
Sbjct:   27 RVLLSRVLATVRHASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLVAILLAASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEEQEAI 186          
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1F3_ARATH (PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.054e-13
Identity = 46/154 (29.87%), Postives = 66/154 (42.86%), Query Frame = 3
Query:  162 LSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQ 623
            LSR    I+ G + RR W  + D  +M  P  +++A++RI+ NL+YF++NY                            WIFLY  R  D+P+ LF     DR                      ++ AL+ GA +V  H   R  EDLFLDE+
Sbjct:   22 LSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLR--DEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEE 173          
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1F2_ARATH (PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.989e-13
Identity = 45/155 (29.03%), Postives = 66/155 (42.58%), Query Frame = 3
Query:  159 FLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQ 623
            ++SR    I+ G + RR W  + D  +M+ P    +A SRI+ NL YF+ NY                            WIFLY  R  D+P+V+FG    DR                    S ++ +L+  A +V  H A R  ++LFLDE+
Sbjct:   21 YISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLR--DEPLVVFGYQIDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEE 173          
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PRA1E_ARATH (PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.676e-11
Identity = 40/139 (28.78%), Postives = 62/139 (44.60%), Query Frame = 3
Query:  207 RHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQ 623
            R W E++D +A+S P    EA + ++ N+SYF+ NY                            WI LY  R ++  +V+ G+   D+                   G  ++ +L++G  IV AHGAFR  +DLFLDE+
Sbjct:   48 RPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEE 186          
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1F4_ARATH (PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.859e-11
Identity = 43/154 (27.92%), Postives = 63/154 (40.91%), Query Frame = 3
Query:  162 LSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQ 623
            +SR    I+ G + RR W  + D  +   P  +++ +SRI+ NL+YF+ NY                            WIFLY  R  D P+ +F     DR                      +++ALM GA +V  H   R  +DLFLDE+
Sbjct:   22 ISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLR--DVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEE 173          
The following BLAST results are available for this feature:
BLAST of FC878488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PR1B1_ARATH6.097e-4651.81PRA1 family protein B1 OS=Arabidopsis thaliana GN=... [more]
PR1B3_ARATH1.040e-4553.89PRA1 family protein B3 OS=Arabidopsis thaliana GN=... [more]
PR1B2_ARATH1.406e-4249.48PRA1 family protein B2 OS=Arabidopsis thaliana GN=... [more]
PR1B4_ARATH2.931e-4048.75PRA1 family protein B4 OS=Arabidopsis thaliana GN=... [more]
PR1B5_ARATH6.992e-3445.57PRA1 family protein B5 OS=Arabidopsis thaliana GN=... [more]
PR1B6_ARATH3.837e-3245.63PRA1 family protein B6 OS=Arabidopsis thaliana GN=... [more]
PR1F3_ARATH3.054e-1329.87PRA1 family protein F3 OS=Arabidopsis thaliana GN=... [more]
PR1F2_ARATH3.989e-1329.03PRA1 family protein F2 OS=Arabidopsis thaliana GN=... [more]
PRA1E_ARATH1.676e-1128.78PRA1 family protein E OS=Arabidopsis thaliana GN=P... [more]
PR1F4_ARATH2.859e-1127.92PRA1 family protein F4 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA10CA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA10CA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878488 ID=FC878488; Name=FC878488; organism=Citrus clementina; type=EST; length=968bp
TTCTTTCGCAGCATTGTAATTTCTCCACGCGCCACCACTAATCACACGCG
CCACCAATGGCCACTCCAGCGACGCTCCCAATCTCAAACCCTCAGACCAA
CACCACCACCACCACAACTCAAACCCAAGCACCCATCGCCACGCCCGCCT
TCCGCGCGTTCCTGTCACGCCTCTCCTCTTCGATCCGTTATGGCTTCTCT
CAGAGACGCCACTGGTCCGAACTCGTTGACCGAACCGCCATGTCCCGACC
CGACTCCTTAGCCGAAGCGTACTCTCGGATCCGAAAGAACCTCTCCTACT
TCAAGGTCAATTACGTAACTTTACTCGGCCTCGTACTCGCATTCTCTCTC
CTGTCCCATCCTTTCTCTCTCCTCGTCCTGCTCTGCCTCCTAGGCGCTTG
GATCTTCCTCTACCTCTTCCGCCCTTCCGATCAACCCGTGGTCCTCTTTG
GCCGTACGTTTTCCGACCGCGAAACGCTCGGCGCTCTTGTCGTTTTGACT
ATCGTTGTCGTGTTCTTGACCAGCGTCGGATCCTTGTTGATCTCAGCGTT
GATGGTCGGAGCTGCGATCGTGTGTGCGCATGGTGCGTTTAGGGTTCCTG
AGGATCTGTTTTTGGACGAGCAAGAGCCCATCAATTCCGGATTCCTGTCG
TTCCTCGGTGGCGCCGCATCCGCCGCTGCCCCCTCGGTTGCGGCACGTGT
CTGAAATGACTCGCCGGATCGTCAATGATCAAGCGAGAATGTGGTCAAGA
AATGGAAGGAACAGGTAGAAAGGTGCTGATTGAACCTCATTTAGTCATAT
TAAAGTAAATGCAACTGATANGATTTCTGTAATTAGATCTCATATTTGAA
ATCTACTAAGGCACATGCTCGATATGCAGCAACAGTATTGAATGAATTTA
ATTTAATTTTCGGGCATTTTGATTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAA
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