FC878488
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1B1_ARATH (PRA1 family protein B1 OS=Arabidopsis thaliana GN=PRA1B1 PE=1 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 6.097e-46 Identity = 100/193 (51.81%), Postives = 116/193 (60.10%), Query Frame = 3 Query: 57 MATPATLPISNXXXXXXXXXXXXXXXXXXXXFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 635 MATP TLP++N FR F SRLS+SIR G SQRR W+EL+DR++M+RP+SL +A SRIRKNL+YFKVNYV G W+FLYLFRPSDQP+V+FGRTFSDRE GSLL SALM+G AIVC HGAF VP+DLFLDEQEP N Sbjct: 1 MATPPTLPVTNQQAVQSQPPINTPA------FRTFFSRLSTSIRDGLSQRRPWTELIDRSSMARPESLTDALSRIRKNLAYFKVNYVAIVSLVLAFSLFSHPLSLLVLIGLLGGWMFLYLFRPSDQPLVVFGRTFSDRETLLALVLSTIVVVFMTSVGSLLTSALMIGVAIVCVHGAFVVPDDLFLDEQEPAN 187
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1B3_ARATH (PRA1 family protein B3 OS=Arabidopsis thaliana GN=PRA1B3 PE=1 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 1.040e-45 Identity = 104/193 (53.89%), Postives = 114/193 (59.07%), Query Frame = 3 Query: 57 MATPATLPISNXXXXXXXXXXXXXXXXXXXXFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 635 MA P TLPIS+ FR FLSRLSSSIR SQRR W ELVDR+A+SRP+SL +AYSRIR+NL YFKVNYVT AWIFLYLFRPSDQP+V+ GRTFSDRE GSLL SALM+G IVC HGAFRVPEDLFLD+QEP N Sbjct: 2 MANPPTLPISDHSGGGSQSQQPVSTPA----FRTFLSRLSSSIRQSLSQRRPWLELVDRSAISRPESLTDAYSRIRRNLPYFKVNYVTIVSLVLALSLLSHPFSLLVLLCLFCAWIFLYLFRPSDQPLVVLGRTFSDRETLGVLVILTIVVVFLTSVGSLLTSALMIGFGIVCLHGAFRVPEDLFLDDQEPAN 190
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1B2_ARATH (PRA1 family protein B2 OS=Arabidopsis thaliana GN=PRA1B2 PE=1 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 1.406e-42 Identity = 95/192 (49.48%), Postives = 113/192 (58.85%), Query Frame = 3 Query: 60 ATPATLPISNXXXXXXXXXXXXXXXXXXXXFRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPIN 635 ++PA LP++N FR FLSRLSSS+R SQRR W ELVDR++ +RPDSL +++SRIRKNL+YFKVNY G+W+FLYLFR SDQP+VLFGR+FSDRE GSLL SAL +G AIVC HGAFRVP+DLFLDEQEP N Sbjct: 3 SSPAILPVTNQQAATQSQPPINSHA-----FRTFLSRLSSSLRESLSQRRPWLELVDRSSFARPDSLTDSFSRIRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRSFSDRETLLGLVLTTIVVVFMTSVGSLLTSALTIGIAIVCLHGAFRVPDDLFLDEQEPAN 189
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1B4_ARATH (PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.931e-40 Identity = 78/160 (48.75%), Postives = 106/160 (66.25%), Query Frame = 3 Query: 150 FRAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEP 629 FR F+++++ +++ G S+RR W+EL DR+A+S+P+S+++A RIRKN SYFKVNY+T +W+FLYLFRP+DQP+VLFGRTFSDRE GS+L+SA+M+G A++CAHGAFR PEDLFLDEQEP Sbjct: 36 FRNFINQITETVKNGLSKRRPWAELADRSALSKPESISDAAVRIRKNYSYFKVNYLTVATAIVGFSLVTHPFSLVFLLCLLASWLFLYLFRPTDQPIVLFGRTFSDRETLGCLILFSIFVIFLTDVGSVLVSAMMIGVALICAHGAFRAPEDLFLDEQEP 195
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1B5_ARATH (PRA1 family protein B5 OS=Arabidopsis thaliana GN=PRA1B5 PE=1 SV=1) HSP 1 Score: 144.821 bits (364), Expect = 6.992e-34 Identity = 72/158 (45.57%), Postives = 98/158 (62.03%), Query Frame = 3 Query: 153 RAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQE 626 RAF++ ++ ++ G S+ R WSEL+DR+A ++PDSL+EA +R RKN SYF+VNYV +W+FLYLFRPSD+P++LFGR+FS+ E GS+LISALM+G A +C HGAFR P+DLFLDEQ+ Sbjct: 37 RAFVNGVTETVCGGLSRSRPWSELLDRSAFTKPDSLSEAGTRFRKNSSYFRVNYVCIVALILGFSLLAHPFSLILLLCLAASWLFLYLFRPSDRPLILFGRSFSEYETLGGLILSTIAVIFFTSVGSVLISALMIGIATICVHGAFRAPDDLFLDEQD 194
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1B6_ARATH (PRA1 family protein B6 OS=Arabidopsis thaliana GN=PRA1B6 PE=1 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 3.837e-32 Identity = 73/160 (45.62%), Postives = 92/160 (57.50%), Query Frame = 3 Query: 153 RAFLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQEPI 632 R LSR+ +++R+ + R W+ELVDR+A SRP SL+EA SR+RKN SYF+ NY+T +W+FLY FRP+DQP+V+ GRTFSD E GSLL+S L VG V HGAFR PEDLFL+EQE I Sbjct: 27 RVLLSRVLATVRHASADARPWAELVDRSAFSRPPSLSEATSRVRKNFSYFRANYITLVAILLAASLLTHPFALFLLASLAASWLFLYFFRPADQPLVIGGRTFSDLETLGILCLSTVVVMFMTSVGSLLMSTLAVGIMGVAIHGAFRAPEDLFLEEQEAI 186
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1F3_ARATH (PRA1 family protein F3 OS=Arabidopsis thaliana GN=PRA1F3 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 3.054e-13 Identity = 46/154 (29.87%), Postives = 66/154 (42.86%), Query Frame = 3 Query: 162 LSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQ 623 LSR I+ G + RR W + D +M P +++A++RI+ NL+YF++NY WIFLY R D+P+ LF DR ++ AL+ GA +V H R EDLFLDE+ Sbjct: 22 LSRAKHRIKAGLATRRAWRVMFDFHSMGLPHGVSDAFTRIKTNLAYFRMNYAIVVLIVIFFSLIWHPTSLIVFTVLVVVWIFLYFLR--DEPIKLFRFQIDDRTVLIVLSVLTVVLLLLTNATFNIVGALVTGAVLVLIHSVVRKTEDLFLDEE 173
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1F2_ARATH (PRA1 family protein F2 OS=Arabidopsis thaliana GN=PRA1F2 PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.989e-13 Identity = 45/155 (29.03%), Postives = 66/155 (42.58%), Query Frame = 3 Query: 159 FLSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQ 623 ++SR I+ G + RR W + D +M+ P +A SRI+ NL YF+ NY WIFLY R D+P+V+FG DR S ++ +L+ A +V H A R ++LFLDE+ Sbjct: 21 YISRAKHRIKSGLATRRPWKSMFDFESMTLPHGFFDAISRIKTNLGYFRANYAIGVLFILFLSLLYHPTSLIVLSILVVFWIFLYFLR--DEPLVVFGYQIDDRTVLIGLSVLTVVMLLLTHATSNILGSLLTAAVLVLIHAAVRRSDNLFLDEE 173
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PRA1E_ARATH (PRA1 family protein E OS=Arabidopsis thaliana GN=PRA1E PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.676e-11 Identity = 40/139 (28.78%), Postives = 62/139 (44.60%), Query Frame = 3 Query: 207 RHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQ 623 R W E++D +A+S P EA + ++ N+SYF+ NY WI LY R ++ +V+ G+ D+ G ++ +L++G IV AHGAFR +DLFLDE+ Sbjct: 48 RPWREILDLSALSLPRGYDEAMAHLKHNISYFRGNYALAVLAIVFLGLIYHPMSMIAFIVVFIGWILLYFSRDANDSIVISGKEVDDKIVLVLLSLVTVLALVYTDVGENVLVSLIIGLLIVGAHGAFRNTDDLFLDEE 186
BLAST of FC878488 vs. ExPASy Swiss-Prot
Match: PR1F4_ARATH (PRA1 family protein F4 OS=Arabidopsis thaliana GN=PRA1F4 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.859e-11 Identity = 43/154 (27.92%), Postives = 63/154 (40.91%), Query Frame = 3 Query: 162 LSRLSSSIRYGFSQRRHWSELVDRTAMSRPDSLAEAYSRIRKNLSYFKVNYVTXXXXXXXXXXXXXXXXXXXXXXXXGAWIFLYLFRPSDQPVVLFGRTFSDREXXXXXXXXXXXXXXXXXXGSLLISALMVGAAIVCAHGAFRVPEDLFLDEQ 623 +SR I+ G + RR W + D + P +++ +SRI+ NL+YF+ NY WIFLY R D P+ +F DR +++ALM GA +V H R +DLFLDE+ Sbjct: 22 ISRAKQRIKDGLATRRSWRVMFDLHSTGLPHGVSDVFSRIKTNLAYFRSNYAIVILNVIFFSLIWHPTSLIVFTGLVFLWIFLYFLR--DVPLKVFRFQIDDRAVLIGLSVITIVLLLLTNATFNIVAALMAGAVLVLIHAVIRKTDDLFLDEE 173 The following BLAST results are available for this feature:
BLAST of FC878488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878488 ID=FC878488; Name=FC878488; organism=Citrus clementina; type=EST; length=968bpback to top |