FC878490

Overview
NameFC878490
Unique NameFC878490
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5855 contig Ccv1_Contig5855:1..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878490 vs. ExPASy Swiss-Prot
Match: C3H30_ORYSJ (Zinc finger CCCH domain-containing protein 30 OS=Oryza sativa subsp. japonica GN=Os04g0663200 PE=2 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 5.243e-51
Identity = 92/175 (52.57%), Postives = 126/175 (72.00%), Query Frame = 3
Query:  354 MRGLHKSKRISWAPDVNLCQERLFLSEESPSQIGLGAQDHLQAKSSWLSHSNGVGNDDILPPGFEGGHPPNQFQVNLSEIPLIKWRCPPRFQLDITWQVVAGEESQEVEIENQRERRVLEAVYPRPSAIPPNPSVSMDIEQSQYSDQQTPLIPITPIEDEETA-------LDAPS 857
            M G  +S+R+SWA   NLC+ RLFLSE+SPSQ GL  QD+LQAK SWL H+ G  +DD LPPGFE   P N  ++++S+IPLI+W+CPP   L+  W +VAGEES+E+EI+N+R    LEA+YPRPS IPPNP +S+D++ + Y D +T L+P+ P+ED++ +       LD PS
Sbjct:    1 MMGSRRSRRVSWASGGNLCKVRLFLSEDSPSQAGLRPQDNLQAKGSWLLHAAGPSSDDSLPPGFESLPPSNDLKIDMSQIPLIRWKCPPHIVLEQDWHIVAGEESREIEIQNERINGALEAIYPRPSNIPPNPFLSLDVKDAHYDDSKTLLVPLIPLEDDDASDQLEGPTLDLPS 175          
BLAST of FC878490 vs. ExPASy Swiss-Prot
Match: C3H6_ARATH (Zinc finger CCCH domain-containing protein 6 OS=Arabidopsis thaliana GN=At1g19860 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 5.796e-50
Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 3
Query:  354 MRGLHKSKRISWAPDVNLCQERLFLSEESPSQIGLGAQDHLQAKSSWLSHSNGVGNDDILPPGFEGGHPPNQFQVNLSEIPLIKWRCPPRFQLDITWQVVAGEESQEVEIENQRERRVLEAVYPRPSAIPPNPSVSMDIEQSQYSDQQTPLIPITPIEDEETALDAPS 857
            MR LHK  R+SW PD  LCQ RLF+SE+SPSQ+G  +QDHLQAKS   SH +    DD LPPGF G    N+ Q+ LS+IPLIKW+C  +  LD  W+VVAG+ES+EVE +N+RE RVLEA YP  S+IPPNPSV  D+E S + DQQT +IPI P+ED++ A+D+ S
Sbjct:    1 MRALHK--RVSWPPDFKLCQVRLFISEDSPSQVGSESQDHLQAKSPLASHPS----DDNLPPGFGGPFSANESQIKLSDIPLIKWKCSVQILLDREWKVVAGDESKEVEAQNERELRVLEAFYPGASSIPPNPSVPADVEDSHHDDQQTIVIPILPVEDDDIAMDSAS 162          
BLAST of FC878490 vs. ExPASy Swiss-Prot
Match: C3H45_ARATH (Zinc finger CCCH domain-containing protein 45 OS=Arabidopsis thaliana GN=At3g51180 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.536e-26
Identity = 68/156 (43.59%), Postives = 89/156 (57.05%), Query Frame = 3
Query:  369 KSKRISWAPDVNLCQERLFLSEESPSQIGLGAQDHLQAKSSWLSHSNGVGNDDILPPGFEGGHPPNQFQVNLSEIPLIKW-RCPPRFQLDITWQVVAGEESQEVEIENQRERRVLEAVYPRPSAIPPNPSVSMDIEQSQYSDQQTPLIPITPIEDE 833
            K  R+SW P   LCQ ++F +E+SP+ +    Q H        S+ +       LPPGFEG H     + N+S IP IKW R PP+F ++ TW V  G  S E + EN R  +VLEA+YP  SAIP  PSVS  +E   + D +TP I +TPIEDE
Sbjct:    8 KKPRVSWPPGPKLCQVKVFRTEDSPANVASQPQRH--------SYPSRKPRGPDLPPGFEGNH--YAVKPNVSNIPRIKWKRPPPKFSVNDTWLVGCGGGSSEWQNENLRISKVLEAIYPHRSAIPSRPSVSPAVEAECFDDSKTPAIRLTPIEDE 153          
BLAST of FC878490 vs. ExPASy Swiss-Prot
Match: C3H68_ARATH (Zinc finger CCCH domain-containing protein 68 OS=Arabidopsis thaliana GN=At5g66270 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.538e-21
Identity = 63/158 (39.87%), Postives = 83/158 (52.53%), Query Frame = 3
Query:  369 KSKRISWAPDVNLCQERLFLSEESPSQIGLGAQDHLQAKSSWLSHSNGVGNDDILPPGFEGGHPPNQFQVNLSEIPLIKWRCPPRFQLDITWQVVAGEESQEVEIENQRERRVLEAVYPRPSAIPPNPSVSMDIEQSQYSDQQTPLIPITPIEDEETA 842
            K  R+SWA D  LCQ +LFLS++ P ++                 SN       LPPGFE      +  +  S IP IKW+ PP F LD    V +G +S E   EN R  +VLEA YP  S IP  PS+++ +E+  Y D +TP IP+T +EDE  A
Sbjct:    6 KKGRVSWASDSMLCQVKLFLSDDCPVKVA----------------SN-------LPPGFEATDYATKRII--SHIPRIKWKRPPLFVLDDALLVGSGGKSIETRSENLRISKVLEAFYPHRSVIPSRPSLTLAVEEEHYDDGKTPNIPLTHVEDERDA 138          
The following BLAST results are available for this feature:
BLAST of FC878490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
C3H30_ORYSJ5.243e-5152.57Zinc finger CCCH domain-containing protein 30 OS=O... [more]
C3H6_ARATH5.796e-5058.33Zinc finger CCCH domain-containing protein 6 OS=Ar... [more]
C3H45_ARATH1.536e-2643.59Zinc finger CCCH domain-containing protein 45 OS=A... [more]
C3H68_ARATH2.538e-2139.87Zinc finger CCCH domain-containing protein 68 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA56DA07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA56DA07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878490 ID=FC878490; Name=FC878490; organism=Citrus clementina; type=EST; length=862bp
CACATATTGAAAACGGCAGAGCATAGAATACGGAGGATCTAGGGTTTCCT
GGGATCTCTCCGTTACTAGTAATTGCTCAATACAGATATTTATAAATCTA
TTTATCTGATCACTTTTTGTGCCTCTCCAATTCGATCTTTTACAATTCTT
TTTAAGTTATTAGGGTTTTCAAAAATCAGCAAGGTATTTAAAATTCAGTA
GTGATAAAGAGTCTAGCTAGGCTTTCGAATCGGAGATATATTTCAAAAAA
AAAATCTTCAATTGAAAACTGCTACAACTACTACTTGCATTATATAACAT
TTACTGAGAATCGAAGCTGGAAAGAAGTTATTTTTGAGAAATATTGTCCA
AATATGCGAGGATTGCACAAATCGAAAAGGATTTCTTGGGCACCAGATGT
AAATCTTTGTCAGGAAAGGCTGTTTTTGTCTGAGGAGTCTCCTTCACAAA
TTGGATTAGGTGCCCAAGATCACCTTCAAGCAAAATCATCATGGTTGTCC
CATTCAAATGGCGTTGGCAATGATGACATTCTTCCTCCTGGTTTTGAAGG
AGGTCATCCCCCAAACCAGTTCCAAGTTAACTTGTCTGAAATTCCCCTAA
TCAAATGGAGATGTCCTCCCAGGTTCCAGTTGGACATTACTTGGCAAGTT
GTTGCTGGGGAGGAAAGCCAAGAAGTGGAGATTGAAAATCAAAGAGAAAG
AAGAGTGCTTGAAGCAGTTTATCCGCGCCCATCTGCCATTCCTCCAAACC
CCTCTGTTTCTATGGACATAGAGCAGTCACAATACAGTGATCAGCAAACT
CCTTTGATACCCATTACTCCCATTGAAGATGAAGAAACAGCCTTAGATGC
GCCATCTGGTTT
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