FC878490
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878490 vs. ExPASy Swiss-Prot
Match: C3H30_ORYSJ (Zinc finger CCCH domain-containing protein 30 OS=Oryza sativa subsp. japonica GN=Os04g0663200 PE=2 SV=3) HSP 1 Score: 201.445 bits (511), Expect = 5.243e-51 Identity = 92/175 (52.57%), Postives = 126/175 (72.00%), Query Frame = 3 Query: 354 MRGLHKSKRISWAPDVNLCQERLFLSEESPSQIGLGAQDHLQAKSSWLSHSNGVGNDDILPPGFEGGHPPNQFQVNLSEIPLIKWRCPPRFQLDITWQVVAGEESQEVEIENQRERRVLEAVYPRPSAIPPNPSVSMDIEQSQYSDQQTPLIPITPIEDEETA-------LDAPS 857 M G +S+R+SWA NLC+ RLFLSE+SPSQ GL QD+LQAK SWL H+ G +DD LPPGFE P N ++++S+IPLI+W+CPP L+ W +VAGEES+E+EI+N+R LEA+YPRPS IPPNP +S+D++ + Y D +T L+P+ P+ED++ + LD PS Sbjct: 1 MMGSRRSRRVSWASGGNLCKVRLFLSEDSPSQAGLRPQDNLQAKGSWLLHAAGPSSDDSLPPGFESLPPSNDLKIDMSQIPLIRWKCPPHIVLEQDWHIVAGEESREIEIQNERINGALEAIYPRPSNIPPNPFLSLDVKDAHYDDSKTLLVPLIPLEDDDASDQLEGPTLDLPS 175
BLAST of FC878490 vs. ExPASy Swiss-Prot
Match: C3H6_ARATH (Zinc finger CCCH domain-containing protein 6 OS=Arabidopsis thaliana GN=At1g19860 PE=2 SV=1) HSP 1 Score: 197.978 bits (502), Expect = 5.796e-50 Identity = 98/168 (58.33%), Postives = 123/168 (73.21%), Query Frame = 3 Query: 354 MRGLHKSKRISWAPDVNLCQERLFLSEESPSQIGLGAQDHLQAKSSWLSHSNGVGNDDILPPGFEGGHPPNQFQVNLSEIPLIKWRCPPRFQLDITWQVVAGEESQEVEIENQRERRVLEAVYPRPSAIPPNPSVSMDIEQSQYSDQQTPLIPITPIEDEETALDAPS 857 MR LHK R+SW PD LCQ RLF+SE+SPSQ+G +QDHLQAKS SH + DD LPPGF G N+ Q+ LS+IPLIKW+C + LD W+VVAG+ES+EVE +N+RE RVLEA YP S+IPPNPSV D+E S + DQQT +IPI P+ED++ A+D+ S Sbjct: 1 MRALHK--RVSWPPDFKLCQVRLFISEDSPSQVGSESQDHLQAKSPLASHPS----DDNLPPGFGGPFSANESQIKLSDIPLIKWKCSVQILLDREWKVVAGDESKEVEAQNERELRVLEAFYPGASSIPPNPSVPADVEDSHHDDQQTIVIPILPVEDDDIAMDSAS 162
BLAST of FC878490 vs. ExPASy Swiss-Prot
Match: C3H45_ARATH (Zinc finger CCCH domain-containing protein 45 OS=Arabidopsis thaliana GN=At3g51180 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.536e-26 Identity = 68/156 (43.59%), Postives = 89/156 (57.05%), Query Frame = 3 Query: 369 KSKRISWAPDVNLCQERLFLSEESPSQIGLGAQDHLQAKSSWLSHSNGVGNDDILPPGFEGGHPPNQFQVNLSEIPLIKW-RCPPRFQLDITWQVVAGEESQEVEIENQRERRVLEAVYPRPSAIPPNPSVSMDIEQSQYSDQQTPLIPITPIEDE 833 K R+SW P LCQ ++F +E+SP+ + Q H S+ + LPPGFEG H + N+S IP IKW R PP+F ++ TW V G S E + EN R +VLEA+YP SAIP PSVS +E + D +TP I +TPIEDE Sbjct: 8 KKPRVSWPPGPKLCQVKVFRTEDSPANVASQPQRH--------SYPSRKPRGPDLPPGFEGNH--YAVKPNVSNIPRIKWKRPPPKFSVNDTWLVGCGGGSSEWQNENLRISKVLEAIYPHRSAIPSRPSVSPAVEAECFDDSKTPAIRLTPIEDE 153
BLAST of FC878490 vs. ExPASy Swiss-Prot
Match: C3H68_ARATH (Zinc finger CCCH domain-containing protein 68 OS=Arabidopsis thaliana GN=At5g66270 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 2.538e-21 Identity = 63/158 (39.87%), Postives = 83/158 (52.53%), Query Frame = 3 Query: 369 KSKRISWAPDVNLCQERLFLSEESPSQIGLGAQDHLQAKSSWLSHSNGVGNDDILPPGFEGGHPPNQFQVNLSEIPLIKWRCPPRFQLDITWQVVAGEESQEVEIENQRERRVLEAVYPRPSAIPPNPSVSMDIEQSQYSDQQTPLIPITPIEDEETA 842 K R+SWA D LCQ +LFLS++ P ++ SN LPPGFE + + S IP IKW+ PP F LD V +G +S E EN R +VLEA YP S IP PS+++ +E+ Y D +TP IP+T +EDE A Sbjct: 6 KKGRVSWASDSMLCQVKLFLSDDCPVKVA----------------SN-------LPPGFEATDYATKRII--SHIPRIKWKRPPLFVLDDALLVGSGGKSIETRSENLRISKVLEAFYPHRSVIPSRPSLTLAVEEEHYDDGKTPNIPLTHVEDERDA 138 The following BLAST results are available for this feature:
BLAST of FC878490 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878490 ID=FC878490; Name=FC878490; organism=Citrus clementina; type=EST; length=862bpback to top |