FC878493

Overview
NameFC878493
Unique NameFC878493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length804
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7268 contig Ccv1_Contig7268:9..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878493 vs. ExPASy Swiss-Prot
Match: HMT2_ARATH (Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1)

HSP 1 Score: 365.925 bits (938), Expect = 1.443e-100
Identity = 183/246 (74.39%), Postives = 207/246 (84.15%), Query Frame = 3
Query:   60 DFLRQSGGAAVIDGGLATELERHGADLNDPLWSAKCLLTSPHLIRQVHLDYLEAGADILISASYQATIQGFEAKGFSREESETMLRRSVEIAREARDMYFERCSKSSCDSVTDDRILKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIXXXXXXXXXXXXNIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTLPDLLVG 797
            DFL+Q+GG AVIDGGLATE ERHGADLNDPLWSAKCL+TSPHLI  VHLDYLEAGADI+ SASYQATIQGFEAKGFSREESE++L++SVEIA EAR+ Y+++C  SS     DD+ILK RPILVAASVGSYGAYLADGSEYSG YGD+IT+E LKDFHRRR+QVL ES  DLIAFETIPNKI            ++KIP WFSFNSKDGVNVVSGDS+ EC SIAE+C++VV+VGINCT P  + G
Sbjct:   11 DFLKQTGGYAVIDGGLATEFERHGADLNDPLWSAKCLVTSPHLIHTVHLDYLEAGADIISSASYQATIQGFEAKGFSREESESLLKKSVEIATEARNSYYDKCGTSSS---MDDKILKKRPILVAASVGSYGAYLADGSEYSGIYGDSITLEKLKDFHRRRLQVLAESGADLIAFETIPNKIEAQAFADLLEEGDVKIPGWFSFNSKDGVNVVSGDSIKECISIAENCEKVVAVGINCTPPRFIEG 253          
BLAST of FC878493 vs. ExPASy Swiss-Prot
Match: SMTA_ASTBI (Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 2.304e-98
Identity = 176/242 (72.73%), Postives = 201/242 (83.06%), Query Frame = 3
Query:   57 TDFLRQSGGAAVIDGGLATELERHGADLNDPLWSAKCLLTSPHLIRQVHLDYLEAGADILISASYQATIQGFEAKGFSREESETMLRRSVEIAREARDMYFERCSKSSCDSVTDDRILKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIXXXXXXXXXXXXNIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTLP 782
            TDFL Q+G AAVI GGL TEL+RHGADLNDPLWSAKCLL+ PHLIRQVHLDYLE GADI+I+ASYQATIQGF+AKGFS EE E +LRRSVEIAREARD+Y++RC++SS D+  D RILK RPIL+A SVGSYGAYLADGSE+SGNYGDAI  ETLKDFHRR+VQ+L +S  DL+AFE +PNK+            NI  PAWF+F SKDG NVVSGDS+ EC SIAESC +VV+VGINCT P
Sbjct:    7 TDFLHQAGRAAVIAGGLGTELQRHGADLNDPLWSAKCLLSCPHLIRQVHLDYLENGADIIITASYQATIQGFKAKGFSDEEGEALLRRSVEIAREARDLYYQRCAESSSDNGDDSRILKQRPILIAGSVGSYGAYLADGSEFSGNYGDAIKSETLKDFHRRKVQILADSGVDLLAFEAVPNKLEAQAYADLLEEENIITPAWFAFTSKDGNNVVSGDSIEECGSIAESCDKVVAVGINCTPP 248          
BLAST of FC878493 vs. ExPASy Swiss-Prot
Match: HMT3_ARATH (Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2)

HSP 1 Score: 330.102 bits (845), Expect = 8.775e-90
Identity = 161/242 (66.53%), Postives = 195/242 (80.58%), Query Frame = 3
Query:   57 TDFLRQSGGAAVIDGGLATELERHGADLNDPLWSAKCLLTSPHLIRQVHLDYLEAGADILISASYQATIQGFEAKGFSREESETMLRRSVEIAREARDMYFERCSKSSCDSVTDDRILKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIXXXXXXXXXXXXNIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTLP 782
            TDFL + GG AV+DGG ATEL+RHGAD+NDPLWSAKCL+TSPHL+ +VHLDYLE+GA+I+I+ASYQATIQGF AKG S  E+E +LRRSVEI  EAR++++ RC+K S D     +  + RPILVAASVGSYGAYLADGSEYSG YGD+++ ETLKDFHRRRVQ+L +S  DLIAFETIPNK+            +I IPAWFSF SKDGV+V  GDS++ECA +A+SCK VV++GINCT P
Sbjct:   14 TDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLESGANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAGKASR-RPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAFETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVADSCKNVVAIGINCTAP 254          
BLAST of FC878493 vs. ExPASy Swiss-Prot
Match: HMT2_MAIZE (Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 5.886e-86
Identity = 159/241 (65.98%), Postives = 194/241 (80.50%), Query Frame = 3
Query:   75 SGGAAVIDGGLATELERHGADLNDPLWSAKCLLTSPHLIRQVHLDYLEAGADILISASYQATIQGFEAKGFSREESETMLRRSVEIAREARDMYFERCSKSSCDSVTDDRILKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIXXXXXXXXXXXXNIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTLPDLLVG 797
            +GG  V+DGGLATELE +GADLNDPLWSAKCLL+SPHLIR+VH+DYLEAGA+I+I+ASYQATIQGFE+KGFS+E+SE +L +SVEIA EAR+M+ +   + S         ++H P+LVAAS+GSYGAYLADGSEYSG+YG+A T E LKDFHRRR+QVL E+ PDLIAFETIPNK+            NI IPAWFSFNSKDGV++VSGDSL+EC +IA+ C +V +VGINCT P  + G
Sbjct:   20 AGGRLVLDGGLATELEANGADLNDPLWSAKCLLSSPHLIRKVHMDYLEAGANIIITASYQATIQGFESKGFSKEQSENLLTKSVEIALEAREMFLKEHLEKSTP-------IQH-PVLVAASLGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAEAYVELLEECNINIPAWFSFNSKDGVHIVSGDSLIECTTIADKCAKVGAVGINCTPPRFIHG 252          
BLAST of FC878493 vs. ExPASy Swiss-Prot
Match: HMT3_MAIZE (Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 6.508e-85
Identity = 158/241 (65.56%), Postives = 194/241 (80.50%), Query Frame = 3
Query:   75 SGGAAVIDGGLATELERHGADLNDPLWSAKCLLTSPHLIRQVHLDYLEAGADILISASYQATIQGFEAKGFSREESETMLRRSVEIAREARDMYFERCSKSSCDSVTDDRILKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIXXXXXXXXXXXXNIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTLPDLLVG 797
            +GG  V+DGGLATELE +GADLNDPLWSAKCLL+SPHLIR+VH+DYLEAGA+I+I+ASYQATIQGFE+KGFS+E+SE +L +SV+IA EAR+M+ +   + S         ++H PILVAA++GSYGAYLADGSEYSG+YG+A T E LKDFHRRR+QVL E+ PDLIAFETIPNK+            NI IP+W SFNSKDGV+VVSGDSL+ECA+IA+ C +V +VGINCT P  + G
Sbjct:   20 AGGRLVLDGGLATELEANGADLNDPLWSAKCLLSSPHLIRKVHMDYLEAGANIIITASYQATIQGFESKGFSKEQSENLLTKSVQIALEAREMFLKEHLEKSTP-------IQH-PILVAAALGSYGAYLADGSEYSGDYGEAGTKEFLKDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEECNINIPSWLSFNSKDGVHVVSGDSLIECATIADKCAKVGAVGINCTPPRFIHG 252          
BLAST of FC878493 vs. ExPASy Swiss-Prot
Match: HMT4_MAIZE (Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 2.315e-82
Identity = 151/245 (61.63%), Postives = 187/245 (76.33%), Query Frame = 3
Query:   63 FLRQSGGAAVIDGGLATELERHGADLNDPLWSAKCLLTSPHLIRQVHLDYLEAGADILISASYQATIQGFEAKGFSREESETMLRRSVEIAREARDMYFERCSKSSCDSVTDDRILKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIXXXXXXXXXXXXNIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTLPDLLVG 797
            F+R++GG AV+DGGL TELE HGADL+D LWSAKCL ++PHLIR+VHLDYLEAGAD++ISASYQATI+GF+++GFSR+ESE +LRRSV +A+EAR ++     +SS             P LVAASVGSYGAY ADGSEYSG+YG ++T E LK+FHRRR+QVL  + PDLIAFETIPNK+             I+IPAWFSF SKDGVN  SGD + ECA++A+SC RV +VG+NCT P  + G
Sbjct:   17 FVREAGGCAVVDGGLGTELEAHGADLHDALWSAKCLASAPHLIRKVHLDYLEAGADVIISASYQATIEGFQSRGFSRDESEELLRRSVHVAQEARRVFAAEGDRSSRRG--------RPPALVAASVGSYGAYRADGSEYSGDYGKSMTKEDLKNFHRRRLQVLAGAGPDLIAFETIPNKLEAQVYAELLEENGIRIPAWFSFTSKDGVNAASGDPINECAAVADSCPRVDAVGVNCTAPRFIHG 253          
BLAST of FC878493 vs. ExPASy Swiss-Prot
Match: HMT1_MAIZE (Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.914e-70
Identity = 132/250 (52.80%), Postives = 173/250 (69.20%), Query Frame = 3
Query:   60 DFLRQSGGAAVIDGGLATELERHGADLNDPLWSAKCLLTSPHLIRQVHLDYLEAGADILISASYQATIQGFEAKGFSREESETMLRRSVEIAREARDMYFERCSKSSCDSVTDDRILKHRPI----LVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIXXXXXXXXXXXXNIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTLPDLLVG 797
            D + ++GG AVIDGG AT+LE  GAD+NDPLWSA CL+T PHL+++VH+ YLEAGAD++IS+SYQATI GF A+G S  E+E +LR SV++A EARD +++              + K +PI    LVAAS+GSYGAYLADGSEYSG+YG  IT E LKDFHRRR+QVL  + PDLIAFE IPN++             ++IP+W  F+S DG N+ SG+S  +C  I  + ++V  VG+NCT P  + G
Sbjct:    6 DLVARAGGCAVIDGGFATQLEALGADINDPLWSAACLITRPHLVKEVHMQYLEAGADVIISSSYQATIPGFIARGMSVAEAEDLLRTSVKLANEARDEFWK------------STLRKSKPIYNRALVAASIGSYGAYLADGSEYSGSYGADITAEKLKDFHRRRLQVLASAGPDLIAFEAIPNQMEAQALVELLEEEKVQIPSWICFSSVDGKNLCSGESFADCLKILNASEKVAVVGVNCTPPQFIEG 243          
BLAST of FC878493 vs. ExPASy Swiss-Prot
Match: HMT1_ARATH (Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1 PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 2.247e-69
Identity = 129/244 (52.87%), Postives = 173/244 (70.90%), Query Frame = 3
Query:   60 DFLRQSGGAAVIDGGLATELERHGADLNDPLWSAKCLLTSPHLIRQVHLDYLEAGADILISASYQATIQGFEAKGFSREESETMLRRSVEIAREARDMYFERCSKSSCDSVTDDRILKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIXXXXXXXXXXXXNIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCTLPDLL 791
            D +++ GG AV+DGG AT+LE HGA +NDPLWSA  L+ +P LI++VH++YLEAGADI++++SYQATI GF ++G S EESE++L++SVE+A EARD ++E+ SK S  S        +   LVAAS+GSYGAYLADGSEYSG+YG+ ++++ LKDFHRRR+QVLVE+ PDL+AFETIPNK+             ++IPAW  F S DG    SG+S  EC         + +VGINC  P  +
Sbjct:   12 DLIKKCGGCAVVDGGFATQLEIHGAAINDPLWSAVSLIKNPELIKRVHMEYLEAGADIVVTSSYQATIPGFLSRGLSIEESESLLQKSVELAVEARDRFWEKVSKVSGHS--------YNRALVAASIGSYGAYLADGSEYSGHYGENVSLDKLKDFHRRRLQVLVEAGPDLLAFETIPNKLEAQACVELLEEEKVQIPAWICFTSVDGEKAPSGESFEECLEPLNKSNNIYAVGINCAPPQFI 247          
BLAST of FC878493 vs. ExPASy Swiss-Prot
Match: HMT_BACSU (Homocysteine S-methyltransferase ybgG OS=Bacillus subtilis GN=ybgG PE=4 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.754e-49
Identity = 104/229 (45.41%), Postives = 149/229 (65.07%), Query Frame = 3
Query:   90 VIDGGLATELERHGADLNDPLWSAKCLLTSPHLIRQVHLDYLEAGADILISASYQATIQGFEAKGFSREESETMLRRSVEIAREARDMYFERCSKSSCDSVTDDRILKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIXXXXXXXXXXXXNIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINCT 776
            V+DG +ATELER G +LND LWSAK L+  P LI+QVH DY  AGAD  I+ASYQ+T +GF A+G S  E+  ++  SV IA EARD ++         S+ ++R+ + +PI +AAS+G YGAYLADGSEY GNY  AI+ + L +FHR R++ L+E+  D++A ETIP  +              +  AW SF++KDG+++  G    +CAS  +  +++ ++GINCT
Sbjct:   15 VLDGAMATELERKGCNLNDSLWSAKILMEEPELIKQVHTDYFAAGADCAITASYQSTFEGFAARGLSEAEARRLIELSVSIAAEARDEFW---------SLEENRLNRPKPI-IAASIGPYGAYLADGSEYRGNY--AISEDELIEFHRPRMKALIEAGADVLACETIP-CLTEAKAIVRLLKEFPETYAWISFSAKDGLHISDGTPAADCASWLDEHRQIAALGINCT 230          
BLAST of FC878493 vs. ExPASy Swiss-Prot
Match: MMUM_ECOLI (Homocysteine S-methyltransferase OS=Escherichia coli (strain K12) GN=mmuM PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.793e-42
Identity = 96/228 (42.11%), Postives = 135/228 (59.21%), Query Frame = 3
Query:   90 VIDGGLATELERHGADLNDPLWSAKCLLTSPHLIRQVHLDYLEAGADILISASYQATIQGFEAKGFSREESETMLRRSVEIAREARDMYFERCSKSSCDSVTDDRILKHRPILVAASVGSYGAYLADGSEYSGNYGDAITVETLKDFHRRRVQVLVESAPDLIAFETIPNKIXXXXXXXXXXXXNIKIPAWFSFNSKDGVNVVSGDSLLECASIAESCKRVVSVGINC 773
            ++DG +ATELE  G +L D LWSAK L+ +P LIR+VHLDY  AGA   I+ASYQAT  GF A+G    +S+ ++ +SVE+AR+AR+ Y     ++               +LVA SVG YGAYLADGSEY G+Y    +VE  + FHR RV+ L+++  DL+A ET+PN                +  AWFSF  +D  ++  G  L +  ++     +VV++GINC
Sbjct:   18 LLDGAMATELEARGCNLADSLWSAKVLVENPELIREVHLDYYRAGAQCAITASYQATPAGFAARGLDEAQSKALIGKSVELARKAREAYLAENPQAG-------------TLLVAGSVGPYGAYLADGSEYRGDY--HCSVEAFQAFHRPRVEALLDAGADLLACETLPN-FSEIEALAELLTAYPRARAWFSFTLRDSEHLSDGTPLRDVVALLAGYPQVVALGINC 229          
The following BLAST results are available for this feature:
BLAST of FC878493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
HMT2_ARATH1.443e-10074.39Homocysteine S-methyltransferase 2 OS=Arabidopsis ... [more]
SMTA_ASTBI2.304e-9872.73Selenocysteine methyltransferase OS=Astragalus bis... [more]
HMT3_ARATH8.775e-9066.53Homocysteine S-methyltransferase 3 OS=Arabidopsis ... [more]
HMT2_MAIZE5.886e-8665.98Homocysteine S-methyltransferase 2 OS=Zea mays GN=... [more]
HMT3_MAIZE6.508e-8565.56Homocysteine S-methyltransferase 3 OS=Zea mays GN=... [more]
HMT4_MAIZE2.315e-8261.63Homocysteine S-methyltransferase 4 OS=Zea mays GN=... [more]
HMT1_MAIZE5.914e-7052.80Homocysteine S-methyltransferase 1 OS=Zea mays GN=... [more]
HMT1_ARATH2.247e-6952.87Homocysteine S-methyltransferase 1 OS=Arabidopsis ... [more]
HMT_BACSU5.754e-4945.41Homocysteine S-methyltransferase ybgG OS=Bacillus ... [more]
MMUM_ECOLI1.793e-4242.11Homocysteine S-methyltransferase OS=Escherichia co... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ5YP10RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ5YP10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878493 ID=FC878493; Name=FC878493; organism=Citrus clementina; type=EST; length=804bp
TTGAGTTCAGTTTAGCGACTTACTTACTCCTCCAATCCATGTCGTCTTCC
TTAATGACGGACTTTCTAAGGCAGTCGGGCGGCGCCGCCGTGATTGACGG
CGGACTTGCGACGGAGCTCGAACGACACGGTGCTGACCTCAACGATCCTT
TGTGGAGCGCCAAGTGCCTTCTCACTTCCCCTCACCTCATTCGCCAGGTA
CACCTTGACTACCTGGAAGCTGGTGCAGATATTTTAATTTCGGCTTCGTA
TCAGGCGACGATTCAGGGGTTTGAAGCAAAAGGCTTCTCTAGAGAAGAAA
GTGAAACCATGCTTAGAAGAAGTGTGGAAATTGCTCGTGAGGCACGGGAT
ATGTATTTTGAGAGGTGTAGCAAAAGTTCTTGCGATAGTGTTACCGATGA
TAGGATTCTCAAACATCGCCCAATACTAGTTGCTGCATCTGTTGGGAGCT
ATGGCGCATATTTGGCTGATGGATCTGAATACAGTGGAAATTATGGTGAT
GCAATCACGGTGGAAACACTGAAAGATTTTCATCGCAGAAGAGTTCAGGT
CCTGGTGGAATCTGCTCCTGACCTGATTGCATTTGAAACAATTCCAAATA
AGATAGAAGCACAGGCTTATGCCGAGCTCTTAGAGGAAGAAAACATAAAA
ATTCCTGCTTGGTTTTCTTTCAACTCAAAAGATGGTGTCAATGTTGTTAG
TGGCGATTCTTTGCTTGAATGTGCCTCAATTGCTGAATCTTGCAAACGAG
TAGTTTCTGTGGGAATTAACTGCACCCTCCCAGATTTATTAGTGGGCTGA
TATT
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