FC916152

Overview
NameFC916152
Unique NameFC916152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length885
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC916152_ssr33 microsatellite FC916152_ssr33:33..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig3455 contig Ccv1_Contig3455:1..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC916152 vs. ExPASy Swiss-Prot
Match: YHCM_ECOLI (Uncharacterized protein yhcM OS=Escherichia coli (strain K12) GN=yhcM PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.733e-16
Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  494 PLVEYERRIIAGELLDGDVRQLGTLEELQRLYDELVESADACKLDRYSSSEKSGRSRWLWSRLLPQSSYSPVKGLYLYGGVGTGKTMLMDLFFYQLPCNWRKKRIHFHDFMLNVHSRLQKHKGVSDPLEV 883
            P  +Y + +  G     DV Q   +  L+ +Y EL+ S          +S    R   LW +    + ++PV+GLY++GGVG GKT LMDLF+  LP   RK+R+HFH FML VH  L   +G +DPLE+
Sbjct:    6 PTSQYLKALNEGSHQPDDV-QKEAVSRLEIIYQELINSTPPAP----RTSGLMARVGKLWGKR-EDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLP-GERKQRLHFHRFMLRVHEELTALQGQTDPLEI 128          
BLAST of FC916152 vs. ExPASy Swiss-Prot
Match: YHCM_ECO57 (Uncharacterized protein yhcM OS=Escherichia coli O157:H7 GN=yhcM PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.733e-16
Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  494 PLVEYERRIIAGELLDGDVRQLGTLEELQRLYDELVESADACKLDRYSSSEKSGRSRWLWSRLLPQSSYSPVKGLYLYGGVGTGKTMLMDLFFYQLPCNWRKKRIHFHDFMLNVHSRLQKHKGVSDPLEV 883
            P  +Y + +  G     DV Q   +  L+ +Y EL+ S          +S    R   LW +    + ++PV+GLY++GGVG GKT LMDLF+  LP   RK+R+HFH FML VH  L   +G +DPLE+
Sbjct:    6 PTSQYLKALNEGSHQPDDV-QKEAVSRLEIIYQELINSTPPAP----RTSGLMARVGKLWGKR-EDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLP-GERKQRLHFHRFMLRVHEELTALQGQTDPLEI 128          
BLAST of FC916152 vs. ExPASy Swiss-Prot
Match: LACE1_HUMAN (Lactation elevated protein 1 OS=Homo sapiens GN=LACE1 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.109e-14
Identity = 54/140 (38.57%), Postives = 78/140 (55.71%), Query Frame = 2
Query:  440 TDAAASASIGEVHRAAAGPLVEYERRIIAGELLDGDVRQLGTLEELQRLYDELVESADACKLDRYSSSEKSGRSRWLWSRLLPQSSYSPVKGLYLYGGVGTGKTMLMDLFFYQLPCNWRKKRIHFHDFMLNVHSRLQKHK 859
            T  A S +  +      GPL  Y+  I A EL D D  Q   ++ LQ+L+++L          +  + E  G    L+S+L  +S   P +GLY+YG VGTGKTM+MD+F+  +    RKKR+HFH FML+VH R+ + K
Sbjct:   57 TPTATSETYLKALAVCHGPLDHYDFLIKAHELKD-DEHQRRVIQCLQKLHEDL----------KGYNIEAEG----LFSKLFSRSK--PPRGLYVYGDVGTGKTMVMDMFYAYVEMK-RKKRVHFHGFMLDVHKRIHRLK 178          
BLAST of FC916152 vs. ExPASy Swiss-Prot
Match: AFG1_YEAST (Protein AFG1 OS=Saccharomyces cerevisiae GN=AFG1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.196e-13
Identity = 54/133 (40.60%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  494 PLVEYERRIIAGELLDGDVRQLGTLEELQRLYDELVESADACKLDRYSSSEKSGRSRWL------WSRLLPQS--SYSPV--------KGLYLYGGVGTGKTMLMDLFFYQLPCNWRKKRIHFHDFMLNVHSR 844
            PL EY+R +  G+L D D  Q G +  L  LYD LV+          +  +  G   WL      +SR  P++  +Y  V        +G+YLYG VG GKTMLMDLF+  +P +  KKRIHFH FM  VH R
Sbjct:   36 PLQEYDRLVKLGKLRD-DTYQRGIISSLGDLYDSLVKYVPPVVKTPNAVDQVGG---WLNGLKSVFSRGKPKNIGAYVDVSKIGNSIPRGVYLYGDVGCGKTMLMDLFYTTIPNHLTKKRIHFHQFMQYVHKR 164          
BLAST of FC916152 vs. ExPASy Swiss-Prot
Match: LACE1_RAT (Lactation elevated protein 1 OS=Rattus norvegicus GN=Lace1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 51/137 (37.23%), Postives = 76/137 (55.47%), Query Frame = 2
Query:  449 AASASIGEVHRAAAGPLVEYERRIIAGELLDGDVRQLGTLEELQRLYDELVESADACKLDRYSSSEKSGRSRWLWSRLLPQSSYSPVKGLYLYGGVGTGKTMLMDLFFYQLPCNWRKKRIHFHDFMLNVHSRLQKHK 859
            AAS +         GPL  Y+  I A EL + D  Q   ++ LQ+L ++L          +  + E+ G    L+S+L  ++   P KGLY+YG VGTGKTM+MD+F+  +     K+R+HFH FML+VH R+ + K
Sbjct:   60 AASEAHSRALAVCHGPLAHYDFLIKAQELKN-DEHQRRVVQCLQKLQEDL----------KGYNIEEGG----LFSKLFSRNK--PPKGLYVYGDVGTGKTMVMDMFYEYVEVK-SKRRVHFHGFMLDVHKRIHRLK 178          
BLAST of FC916152 vs. ExPASy Swiss-Prot
Match: LACE1_MOUSE (Lactation elevated protein 1 OS=Mus musculus GN=Lace1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 50/123 (40.65%), Postives = 72/123 (58.54%), Query Frame = 2
Query:  491 GPLVEYERRIIAGELLDGDVRQLGTLEELQRLYDELVESADACKLDRYSSSEKSGRSRWLWSRLLPQSSYSPVKGLYLYGGVGTGKTMLMDLFFYQLPCNWRKKRIHFHDFMLNVHSRLQKHK 859
            GPL  Y+  I + EL + D  Q   ++ LQ+L ++L          +  S E+ G    L+S+L  ++   P KGLY+YG VGTGKTM+MD+F+  +    RKKR+HFH FML+VH R+   K
Sbjct:   74 GPLDHYDFLIKSQELRE-DEHQRRVVQCLQKLQEDL----------KGYSIEEGG----LFSKLFSRNK--PPKGLYVYGDVGTGKTMVMDMFYAYVETK-RKKRVHFHGFMLDVHRRIHHLK 178          
BLAST of FC916152 vs. ExPASy Swiss-Prot
Match: LACE1_DANRE (Lactation elevated protein 1 homolog OS=Danio rerio GN=lace1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.846e-12
Identity = 40/86 (46.51%), Postives = 51/86 (59.30%), Query Frame = 2
Query:  602 ESADACKLDRYSSSEKSGRSRWLWSRLLPQSSYSPVKGLYLYGGVGTGKTMLMDLFFYQLPCNWRKKRIHFHDFMLNVHSRLQKHK 859
            E+ + C+ D   S+EK  +           S   P +G Y+YG VGTGKTMLMDL FY    N RKKR+HF+ FML+VH R+ K K
Sbjct:  124 ETVNICRPDENVSNEKEDQQE-------ESSKPHPPQGYYIYGNVGTGKTMLMDL-FYSFVENRRKKRVHFNGFMLDVHRRIHKLK 201          
The following BLAST results are available for this feature:
BLAST of FC916152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
YHCM_ECOLI5.733e-1639.23Uncharacterized protein yhcM OS=Escherichia coli (... [more]
YHCM_ECO575.733e-1639.23Uncharacterized protein yhcM OS=Escherichia coli O... [more]
LACE1_HUMAN4.109e-1438.57Lactation elevated protein 1 OS=Homo sapiens GN=LA... [more]
AFG1_YEAST1.196e-1340.60Protein AFG1 OS=Saccharomyces cerevisiae GN=AFG1 P... [more]
LACE1_RAT1.012e-1237.23Lactation elevated protein 1 OS=Rattus norvegicus ... [more]
LACE1_MOUSE1.012e-1240.65Lactation elevated protein 1 OS=Mus musculus GN=La... [more]
LACE1_DANRE3.846e-1246.51Lactation elevated protein 1 homolog OS=Danio reri... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA27DD03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA27DD03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC916152 ID=FC916152; Name=FC916152; organism=Citrus clementina; type=EST; length=885bp
CAAATATTATCGGAACCTCTTACATCAACCTCCTCTCTCTCTCTCTCTCT
CTCTCTCTCTGTCTCGCTCCGAAAACATAGCCTCGATTTACAATAAACAA
ATAAATGTATTTTTTATAATTAATTATTTCTTCAGCTATTTGATTCTCCT
CAATTTCTCGTCTTCAATCCGGCCGGCTCAGCTCGATCCGGACTGTTGCT
TTTAATTGCGTCCAATCACAAGCGACCGACTGTTTTGATTGACGATGAGG
AGAATTGCGGGATCTGCTCGCTACTTTCGATCAGCTCTGTGGCATCGCAA
ATTTGATTATTGGAGTAGTTTTACGACAAGGCCCAAGGATTTGACAGAGA
ATTATCATAATTGTGCTTACGGGGTTACTAATAATGCTGAAATTGAAAGT
TTTTTACGTTCAAAATTTATGGTCTCAAGAGCTCTGTCAACGGATGCTGC
TGCTAGCGCTTCCATTGGAGAAGTACATAGAGCAGCTGCAGGGCCTCTTG
TGGAGTATGAGCGAAGAATTATCGCGGGTGAGCTTTTGGATGGTGACGTC
CGTCAGTTAGGAACGTTAGAAGAACTTCAAAGACTATATGATGAGCTTGT
TGAATCAGCTGATGCCTGTAAGTTAGATCGCTATTCATCTTCTGAGAAAT
CTGGAAGGAGTCGGTGGCTGTGGTCACGTTTACTGCCACAATCTTCATAC
TCACCTGTCAAAGGATTGTACCTTTATGGGGGAGTAGGGACTGGGAAAAC
AATGTTGATGGACCTATTTTTTTATCAATTGCCCTGCAATTGGAGAAAGA
AGAGGATCCATTTTCATGACTTCATGTTGAATGTCCACAGCCGCTTGCAA
AAGCACAAGGGTGTATCAGATCCGCTTGAAGTTGT
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