FC917087

Overview
NameFC917087
Unique NameFC917087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length943
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC917087_ssr594 microsatellite FC917087_ssr594:594..605. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4593 contig Ccv1_Contig4593:1..943. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC917087 vs. ExPASy Swiss-Prot
Match: CHIA_MOUSE (Acidic mammalian chitinase OS=Mus musculus GN=Chia PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 6.986e-15
Identity = 51/155 (32.90%), Postives = 74/155 (47.74%), Query Frame = 1
Query:  394 AAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPNTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN----DQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAV 846
            A Y P    F    I+    TH+ YAF   + N  ++     +   L +    L+ +NS +K              F+ M ST + R  FI S I+  R+YGFDG+DLDWE+P +     QD     +L K+ R +  QEA  +N   L++TAAV
Sbjct:   32 AQYRPGLGSFKPDDINPCLCTHLIYAFAGMQNN--EITTIEWNDVTLYKAFNDLKNRNSKLKTLLAIGGWNFGTAPFTTMVSTSQNRQTFITSVIKFLRQYGFDGLDLDWEYPGSRGSPPQDKHLFTVLVKEMREAFEQEAIESNRPRLMVTAAV 184          
BLAST of FC917087 vs. ExPASy Swiss-Prot
Match: CHIA_RAT (Acidic mammalian chitinase OS=Rattus norvegicus GN=Chia PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.124e-15
Identity = 51/155 (32.90%), Postives = 74/155 (47.74%), Query Frame = 1
Query:  394 AAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPNTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN----DQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAV 846
            A Y P    F    I+    TH+ YAF   + N  ++     +   L +    L+ +NS +K              F+ M ST + R  FI S I+  R+YGFDG+DLDWE+P +     QD     +L K+ R +  QEA  +N   L++TAAV
Sbjct:   32 AQYRPGLGSFKPDDINPCLCTHLIYAFAGMQNN--QITTIEWNDVTLYKAFNDLKNRNSKLKTLLAIGGWNFGTAPFTTMVSTSQNRQTFITSVIKFLRQYGFDGLDLDWEYPGSRGSPPQDKHLFTVLVKELREAFEQEAIESNRPRLMVTAAV 184          
BLAST of FC917087 vs. ExPASy Swiss-Prot
Match: CHIA_BOVIN (Acidic mammalian chitinase OS=Bos taurus GN=CHIA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.556e-14
Identity = 50/155 (32.26%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  394 AAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPNTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFP----ANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAV 846
            A Y P    F   +ID    TH+ YAF     +  ++     +   L      L+ +NS +K              F+ M +T E R  FI+S I+   +YGFDG+D DWE+P    +  QD     +L ++ R +  QEA+ TN   LL+TAAV
Sbjct:   32 AQYRPGLGSFKPDNIDPCLCTHLIYAFA--GMSNSEITTIEWNDVALYSSFNDLKKKNSQLKILLAIGGWNFGTAPFTAMVATPENRKTFISSVIKFLHQYGFDGLDFDWEYPGFRGSPSQDKHLFTVLVQETREAFEQEAKQTNKPRLLVTAAV 184          
BLAST of FC917087 vs. ExPASy Swiss-Prot
Match: CHIA_HUMAN (Acidic mammalian chitinase OS=Homo sapiens GN=CHIA PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.528e-14
Identity = 50/155 (32.26%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  394 AAYWPSFNDFPASSIDTSYFTHIYYAFLLPEPNTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN----DQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAV 846
            A Y P    F   +ID    TH+ YAF   + N  ++     +   L +    L+ +NS +K              F+ M ST E R  FI S I+  R+Y FDG+D DWE+P +     QD     +L ++ R +  QEA+  N   L++TAAV
Sbjct:   32 AQYRPGLGRFMPDNIDPCLCTHLIYAFAGRQNN--EITTIEWNDVTLYQAFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAV 184          
BLAST of FC917087 vs. ExPASy Swiss-Prot
Match: CHIT_CAEEL (Probable endochitinase OS=Caenorhabditis elegans GN=cht-1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.485e-12
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = 1
Query:  544 VGTLRVQNSHIKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPANDQDMSNLALLFKQWRTSINQEARITNTSPLLLTAAV 846
            V  L+V ++ +K             +F  MA++  +R +FI+S I   R +GFDG+D+DWE+P+   DM+N   L K+ + +   EA  T    LL+TAAV
Sbjct:  119 VNKLKVTDTQLKTLLSFGGWSFGTALFQGMAASSASRKVFIDSAITFVRTWGFDGIDIDWEYPSGATDMANYVALVKELKAACESEAGSTGKDRLLVTAAV 219          
BLAST of FC917087 vs. ExPASy Swiss-Prot
Match: CH3L4_MOUSE (Chitinase-3-like protein 4 OS=Mus musculus GN=Chi3l4 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.535e-12
Identity = 45/151 (29.80%), Postives = 73/151 (48.34%), Query Frame = 1
Query:  406 PSFNDFPASSIDTSYFTHIYYAFLLPEPNTFKLNVTLLDHAKL--LELVGTLRVQNSHIKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN----DQDMSNLALLFKQWRTSINQEARITNTSPLLLTA 840
            P+   F   +ID    TH+ YAF   + N     +T L    L   E +  L+ +N+ +K           P  FS M ST + R  FI S I   R+Y FDG++LDW++P +     +D    ++L ++ R +  +E+ + +   LLLT+
Sbjct:   36 PTEGSFKPGNIDPCLCTHLIYAFAGMKNN----EITYLSEQDLRDYEALNGLKDRNTELKTLLAIGGWKFGPAPFSSMVSTPQNRQTFIKSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLVQEMRKAFEEESTLNHIPRLLLTS 182          
BLAST of FC917087 vs. ExPASy Swiss-Prot
Match: CHIT1_HUMAN (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 45/146 (30.82%), Postives = 64/146 (43.84%), Query Frame = 1
Query:  421 FPASSIDTSYFTHIYYAFLLPEPNTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAND----QDMSNLALLFKQWRTSINQEARITNTSPLLLTAAV 846
            F    +D S  TH+ YAF        +L+ T  +   L +    L+  N  +K              F+ M +T   R  F+NS I   RKY FDG+DLDWE+P +      D      L +    +  QEA+ +    LLL+AAV
Sbjct:   41 FLPKDLDPSLCTHLIYAFA--GMTNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAV 184          
BLAST of FC917087 vs. ExPASy Swiss-Prot
Match: CH3L3_MOUSE (Chitinase-3-like protein 3 OS=Mus musculus GN=Chi3l3 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.233e-11
Identity = 45/149 (30.20%), Postives = 72/149 (48.32%), Query Frame = 1
Query:  406 PSFNDFPASSIDTSYFTHIYYAFLLPEPNTFKLNVTLLDHAKLLELVGTLRVQNSHIKXXXXXXXXXXDPNVFSKMASTKETRAIFINSTIEIARKYGFDGVDLDWEFPAN----DQDMSNLALLFKQWRTSINQEARITNTSPLLLTA 840
            P    F   +ID    TH+ YAF   + N  ++  T     +  E +  L+ +N+ +K           P  FS M ST + R IFI S I   R+Y FDG++LDW++P +     +D    ++L K+ R +  +E+   +   LLLT+
Sbjct:   36 PIEGSFKPGNIDPCLCTHLIYAFAGMQNN--EITYTHEQDLRDYEALNGLKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQYPGSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTS 182          
The following BLAST results are available for this feature:
BLAST of FC917087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CHIA_MOUSE6.986e-1532.90Acidic mammalian chitinase OS=Mus musculus GN=Chia... [more]
CHIA_RAT9.124e-1532.90Acidic mammalian chitinase OS=Rattus norvegicus GN... [more]
CHIA_BOVIN1.556e-1432.26Acidic mammalian chitinase OS=Bos taurus GN=CHIA P... [more]
CHIA_HUMAN4.528e-1432.26Acidic mammalian chitinase OS=Homo sapiens GN=CHIA... [more]
CHIT_CAEEL2.485e-1235.64Probable endochitinase OS=Caenorhabditis elegans G... [more]
CH3L4_MOUSE5.535e-1229.80Chitinase-3-like protein 4 OS=Mus musculus GN=Chi3... [more]
CHIT1_HUMAN1.233e-1130.82Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV... [more]
CH3L3_MOUSE1.233e-1130.20Chitinase-3-like protein 3 OS=Mus musculus GN=Chi3... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA38CD07RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CD07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC917087 ID=FC917087; Name=FC917087; organism=Citrus clementina; type=EST; length=943bp
AAAATATCAACCATGGCCAAATACAAATTCATGTCACCTATAATTCCAGT
GCTCATCGTTTTCACTTTTGTCAAAGACTGTCACTCAATCTCTACAGCAA
TGCCTCCAGATCATCCTTGGCCAGCCCCAGTACCCCCTTCACCTTCTTAC
ATCGCTGGTCCGGGTATGGATCCTTACACGGAGGTAACCCCATATCCTGT
GGTTCCAGCCTCGGATCCTCACACGGCAGTACCCACATCTCCAGTGGTGC
CCGCCCCGGAATCTTACCTCGCGGTACCTACGATTCCTGAGTTTCCAGCT
CCGAATTTCTCTCCACCCGTATCCGAGCCTGGGCCCACATCACCGGAACC
ATATCCATCCCCCCCGGTTCCACGTCGTTTCAGAGGAATCAAAGCAGCAT
ATTGGCCATCGTTTAATGACTTTCCAGCTTCTTCAATCGACACGTCTTAT
TTCACTCATATTTACTACGCATTCCTCTTGCCTGAGCCGAACACTTTCAA
ACTTAATGTCACTTTATTAGACCACGCAAAATTACTTGAGCTAGTAGGCA
CCCTTCGTGTCCAAAACTCACATATCAAAATTCTTTTATCAATAGGAGGA
GGAGGTAGCGACCCAAATGTGTTCTCCAAAATGGCTAGCACTAAAGAAAC
TCGTGCAATATTCATAAATTCAACAATTGAAATTGCAAGAAAGTATGGTT
TTGATGGTGTTGATTTGGATTGGGAATTTCCAGCTAATGATCAAGATATG
TCAAATCTTGCATTGTTATTTAAACAATGGCGAACATCTATAAATCAAGA
AGCCAGGATCACTAATACTTCACCTCTTTTATTAACTGCAGCGGTATATT
TTGCTTCAAGATTACAATATATGGTGGACCTAGAGGTTATCCTATTGAGG
CAATTAACAAATACATGAAATGGGTTTAGTCAATGTGCTTTGA
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