FC917884
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC917884 vs. ExPASy Swiss-Prot
Match: HNRPQ_HUMAN (Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2) HSP 1 Score: 172.17 bits (435), Expect = 3.626e-42 Identity = 92/287 (32.06%), Postives = 166/287 (57.84%), Query Frame = 1 Query: 31 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 885 P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y + YG Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYG 435
BLAST of FC917884 vs. ExPASy Swiss-Prot
Match: HNRPQ_RAT (Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 4.736e-42 Identity = 92/287 (32.06%), Postives = 166/287 (57.84%), Query Frame = 1 Query: 31 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 885 P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y + YG Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYG 345
BLAST of FC917884 vs. ExPASy Swiss-Prot
Match: HNRPQ_MOUSE (Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus GN=Syncrip PE=1 SV=2) HSP 1 Score: 171.785 bits (434), Expect = 4.736e-42 Identity = 92/287 (32.06%), Postives = 166/287 (57.84%), Query Frame = 1 Query: 31 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTYPPHLGYG 885 P G+E+++G IP D +D+L + G + ++R+M +G +GYAFVTF TKE A +A++ N+ E++ GK I + A +RLF+G++P++ ++ + + +K+ G+ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + + ++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y F+HF ER A+KA++ +++G+ ++ AKP DQK +++A N Y + YG Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLERV--------KKLKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP-PDQKRKERKAQRQAAKNQMYDDYYYYG 435
BLAST of FC917884 vs. ExPASy Swiss-Prot
Match: HNRPR_HUMAN (Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR PE=1 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 2.351e-41 Identity = 90/280 (32.14%), Postives = 166/280 (59.29%), Query Frame = 1 Query: 31 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTSGGSNSQKSALNPTY 864 P G+EV++G IP D +D+L + G + ++R+M SG+ +GYAF+TF KE A +A++ +S E++ GK + + A +RLF+G++P+N ++++ + +K+ G++ + L P + +NRGF F+EY +H A +R+++ + K K+ N TV WADP + ++VK L+V+NL +T++ L++ F+ GK+ +V ++ Y FVHF +R +A+KA+ EI+G+ ++ LAKP D+K +++++ + Y Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERV--------KKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKP-PDKKRKERQAARQASRSTAY 431
BLAST of FC917884 vs. ExPASy Swiss-Prot
Match: RBM47_PONAB (RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2) HSP 1 Score: 152.525 bits (384), Expect = 2.973e-36 Identity = 90/286 (31.47%), Postives = 155/286 (54.20%), Query Frame = 1 Query: 31 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP------QADQKTSGGSNSQKSALNPTY 864 P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK LYV+NL + T+D +K+ F G+ + K ++ Y FVHF R A+ A+ N E++G L+ +LAKP QK + G + ++A P+Y Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGGAAEAAQQPSY 345
BLAST of FC917884 vs. ExPASy Swiss-Prot
Match: RBM47_HUMAN (RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=1) HSP 1 Score: 152.525 bits (384), Expect = 2.973e-36 Identity = 90/286 (31.47%), Postives = 155/286 (54.20%), Query Frame = 1 Query: 31 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP------QADQKTSGGSNSQKSALNPTY 864 P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK LYV+NL + T+D +K+ F G+ + K ++ Y FVHF R A+ A+ N E++G L+ +LAKP QK + G + ++A P+Y Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAARGGGAAEAAQQPSY 345
BLAST of FC917884 vs. ExPASy Swiss-Prot
Match: RBM47_CANFA (RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 8.652e-36 Identity = 91/287 (31.71%), Postives = 157/287 (54.70%), Query Frame = 1 Query: 31 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS-------GGSNSQKSALNPTY 864 P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFVT+ K A +A+ ELN+ E++ G+ + + RLFIG +P+ +++ + + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK LYV+NL + T+D +K+ F G+ + K ++ Y FVHFA R A+ A+ + E++G L+ +LAKP ++ S GG ++ +A P Y Sbjct: 69 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKKIRD---YAFVHFASREDAVLAMNSLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGAAEAAAPQPGY 348
BLAST of FC917884 vs. ExPASy Swiss-Prot
Match: RBM47_MOUSE (RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 2.517e-35 Identity = 89/288 (30.90%), Postives = 156/288 (54.17%), Query Frame = 1 Query: 31 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQKSALNPTY 864 P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++ + + K+ GV+++ + + +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK LYV+NL + T++ +K+ F G+ + K ++ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S GG +++ A P+Y Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKKSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSY 347
BLAST of FC917884 vs. ExPASy Swiss-Prot
Match: RBM47_RAT (RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1) HSP 1 Score: 149.058 bits (375), Expect = 3.288e-35 Identity = 89/288 (30.90%), Postives = 155/288 (53.82%), Query Frame = 1 Query: 31 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADPR-NAESSAASQVKALYVKNLPKDITQDRLKELFAHHGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKPQADQKTS--------GGSNSQKSALNPTY 864 P G EV++G IP D +D+L +++G + E+R+M D G+ +GYAFV + K A +A+ ELN+ E++ G+ + + RLFIG +P+ ++ + + K+ GV+++ + + +NRGFAF+EY +H A +R+K+ + +L + V WA+P + + VK LYV+NL + T++ +K F G+ + K ++ Y FVHF R A+ A+ N E++G L+ +LAKP ++ S GG +++ A P+Y Sbjct: 67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQTVKILYVRNLMIETTEETIKRSF---GQFNPGCVERVKKIRD---YAFVHFTSREDAVHAMNNLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGGSAEAVAQQPSY 347
BLAST of FC917884 vs. ExPASy Swiss-Prot
Match: RBM46_DANRE (Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 5.608e-35 Identity = 86/261 (32.95%), Postives = 150/261 (57.47%), Query Frame = 1 Query: 31 PPHGSEVYLGGIPHDASDDDLRHFCKSIGEVTEVRIMKGKDSGEAKGYAFVTFRTKELASQAIEELNSCELK-GKKIKCSAAQAKHRLFIGNVPRNWGEDDMRKAVTKIGPGVISIELVKDPQNANQNRGFAFIEYYNHACAEYSRQKMSNPKFKLDDNAPTVSWADP-RNAESSAASQVKALYVKNLPKDITQDRLKELFAH--HGKITKVVIPPAKPGQERSRYGFVHFAERSSAMKALKNTEKYEIDGQVLDCSLAKP 801 PP G EV++G IP D +D+L + G + E R+M + SGE +GYAFV + T+E A +AI+ L++ E++ GK I + RLFIG++P++ ++++++ + K+ GV+ + + + +NRGFAF+EY +H A +R+K+ F+L + V WA+P + + +V+ LYV+NL T++ L+ F+ G + +V ++ + Y F+HF R A+ AL++ IDG ++ +LAKP Sbjct: 41 PPRGREVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMM-EFSGENRGYAFVMYTTREKAQRAIQLLDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETMQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERV--------KKLTDYAFIHFYNREDALTALESMNGKVIDGSPIEVTLAKP 292 The following BLAST results are available for this feature:
BLAST of FC917884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 82
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Sequences
The
following sequences are available for this feature:
EST sequence >FC917884 ID=FC917884; Name=FC917884; organism=Citrus clementina; type=EST; length=892bpback to top |