FC918048

Overview
NameFC918048
Unique NameFC918048
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length874
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC918048_ssr426 microsatellite FC918048_ssr426:426..437. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12442 contig Ccv1_Contig12442:35..927. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFRS1_ARATH (Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 9.184e-59
Identity = 117/200 (58.50%), Postives = 136/200 (68.00%), Query Frame = 1
Query:  136 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 735
            MS R SRT+YVGNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ARDAEDAI GRDGY+FDG RLRVELAH                                          SE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT GVVDYT  EDMKYA++KLDDTEFRN ++ G + V+
Sbjct:    1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAH-------GGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTEFRNAFSNGYVRVR 193          
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: RSP3_CAEEL (Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis elegans GN=rsp-3 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 8.636e-41
Identity = 92/188 (48.94%), Postives = 115/188 (61.17%), Query Frame = 1
Query:  142 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            G   + +YVGNLP D+RE EVED+F+KYGRI  +++K   R P + FVEFE+ RDAEDA+R RDGY FDG R+RVE                                             + YRVIV GLP + SWQDLKDHMR AGDVC+A+V+RD  GT GVV++T  ED+KYA+RKLDDT+FR+
Sbjct:    5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEFTR----GVGPRGPGGRPLQDGGDHRGGDFRGGRGGGRGGGPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD--GT-GVVEFTRYEDVKYAVRKLDDTKFRS 184          
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFR1B_DANRE (Splicing factor, arginine/serine-rich 1B OS=Danio rerio GN=sfrs1b PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.128e-40
Identity = 94/182 (51.65%), Postives = 111/182 (60.99%), Query Frame = 1
Query:  160 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  +VED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGGGRGGGGGGGVGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 181          
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFRS1_CHICK (Splicing factor, arginine/serine-rich 1 OS=Gallus gallus GN=SFRS1 PE=1 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 1.473e-40
Identity = 93/182 (51.10%), Postives = 111/182 (60.99%), Query Frame = 1
Query:  160 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFR1A_DANRE (Splicing factor, arginine/serine-rich 1A OS=Danio rerio GN=sfrs1a PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 5.598e-40
Identity = 93/182 (51.10%), Postives = 110/182 (60.44%), Query Frame = 1
Query:  160 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  +VED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+  RDGY++DG RLRVE                                             SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSR----RSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 191          
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFRS1_XENTR (Splicing factor, arginine/serine-rich 1 OS=Xenopus tropicalis GN=sfrs1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.311e-40
Identity = 92/187 (49.20%), Postives = 111/187 (59.36%), Query Frame = 1
Query:  160 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH-----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                                  SEYRV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 201          
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFRS9_MOUSE (Splicing factor, arginine/serine-rich 9 OS=Mus musculus GN=Sfrs9 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.247e-39
Identity = 90/191 (47.12%), Postives = 112/191 (58.64%), Query Frame = 1
Query:  133 EMSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            E  G     IYVGNLPSD+RE ++EDLFYKYGRI +IELK       + FV FE+ RDAEDAI GR+GY++  CRLRVE                                             S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D     G+V+Y   EDM+YA+RKLDDT+FR+
Sbjct:    8 ERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPR----------------------TYGGRGGWPRGARNGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFRS 173          
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFRS1_PONAB (Splicing factor, arginine/serine-rich 1 OS=Pongo abelii GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 2.127e-39
Identity = 91/182 (50.00%), Postives = 110/182 (60.44%), Query Frame = 1
Query:  160 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFRS1_PIG (Splicing factor, arginine/serine-rich 1 OS=Sus scrofa GN=SFRS1 PE=2 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 2.127e-39
Identity = 91/182 (50.00%), Postives = 110/182 (60.44%), Query Frame = 1
Query:  160 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
BLAST of FC918048 vs. ExPASy Swiss-Prot
Match: SFRS1_MOUSE (Splicing factor, arginine/serine-rich 1 OS=Mus musculus GN=Sfrs1 PE=1 SV=3)

HSP 1 Score: 162.925 bits (411), Expect = 2.127e-39
Identity = 91/182 (50.00%), Postives = 110/182 (60.44%), Query Frame = 1
Query:  160 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 705
            IYVGNLP DIR  ++ED+FYKYG I DI+LK     P + FVEFE+ RDAEDA+ GRDGY++DG RLRVE                                             SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT GVV++   EDM YA+RKLD+T+FR+
Sbjct:   18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR--------------SGRGTGRGGGGGGGGGAPRGRYGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFRS 182          
The following BLAST results are available for this feature:
BLAST of FC918048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SFRS1_ARATH9.184e-5958.50Pre-mRNA-splicing factor SF2 OS=Arabidopsis thalia... [more]
RSP3_CAEEL8.636e-4148.94Probable splicing factor, arginine/serine-rich 3 O... [more]
SFR1B_DANRE1.128e-4051.65Splicing factor, arginine/serine-rich 1B OS=Danio ... [more]
SFRS1_CHICK1.473e-4051.10Splicing factor, arginine/serine-rich 1 OS=Gallus ... [more]
SFR1A_DANRE5.598e-4051.10Splicing factor, arginine/serine-rich 1A OS=Danio ... [more]
SFRS1_XENTR7.311e-4049.20Splicing factor, arginine/serine-rich 1 OS=Xenopus... [more]
SFRS9_MOUSE1.247e-3947.12Splicing factor, arginine/serine-rich 9 OS=Mus mus... [more]
SFRS1_PONAB2.127e-3950.00Splicing factor, arginine/serine-rich 1 OS=Pongo a... [more]
SFRS1_PIG2.127e-3950.00Splicing factor, arginine/serine-rich 1 OS=Sus scr... [more]
SFRS1_MOUSE2.127e-3950.00Splicing factor, arginine/serine-rich 1 OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA47CH10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA47CH10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC918048 ID=FC918048; Name=FC918048; organism=Citrus clementina; type=EST; length=874bp
CTCATTTCTCTCTGGAGCTCTCCATCGGAAGCAGCGGTCGTTTTCGGTAA
GGACCGGCGGGTCGTCACGTGGTGGTTCAGCGACGCTTCTCCTGCTCATA
AATCTTGTGAAATTTTATAGTCCTTACCATCAGAAATGAGTGGTCGTTTT
TCTCGTACAATCTATGTTGGCAACCTGCCCTCTGATATAAGAGAATATGA
AGTTGAGGATCTCTTTTACAAGTATGGCCGTATATTGGATATTGAATTAA
AGATCCCCCCTCGCCCGCCATGTTATTGTTTTGTTGAGTTTGAGAATGCT
CGTGATGCCGAAGATGCTATTAGAGGTCGTGATGGCTATAACTTTGATGG
TTGTCGTTTAAGGGTTGAGCTCGCCCATGGTGGTAGTGGTAGAGGTCCAT
CATCAAGTGATCGTCGTGGTGGCTATGGTGGTGGTGGTGCTGGTGGTGCT
GGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTCGTTTTGGCATCTCACG
CCATTCTGAATATCGAGTTATTGTCCGCGGGCTTCCTTCTTCAGCTTCCT
GGCAGGATTTAAAGGATCATATGCGAAAAGCAGGCGATGTTTGTTTTGCT
GAAGTTTCCCGTGATAGTGAGGGGACTTATGGGGTCGTTGATTATACTAA
TCCTGAAGACATGAAATATGCAATTCGGAAACTTGATGACACTGAATTTA
GAAATCCTTGGGCAAGAGGGCGCATAACGGTGAAAAGATACGATCGTAGT
CCATCGAGAAGCCGCAGTAGAAGCCGAAGTAGAAGCCGAAGCAGAAGCAG
AATTGTGCGAAGAAATAGAAGTAAATCATTAGAGCGTTCTGTTTCCAGAT
CAGTGTNCAGATCTATGTCTGCTT
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