FC919336

Overview
NameFC919336
Unique NameFC919336
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
PCRcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC919336_ssr142 microsatellite FC919336_ssr142:142..153. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig4178 contig Ccv1_Contig4178:906..1507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 415.616 bits (1067), Expect = 9.456e-116
Identity = 199/200 (99.50%), Postives = 200/200 (100.00%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQR+FYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT
Sbjct:  289 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 488          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 2.867e-88
Identity = 150/200 (75.00%), Postives = 176/200 (88.00%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IAR IT RNTAG +N QAVALRSGSDLSVFY+CSFE YQDTLYVHS R+FYR+CD+YGTVDFIFGNAA VLQNCNIFAR+P ++TNT+TAQGR+DPNQ+TGIIIHN RVTAASDL+PV  S KT+LGRPW+QYSRTV++KT LDSLI+P GW+EW G+FAL TL+YAE+ NTGPG+ST+ RV W G+ VL S S+ S+FT
Sbjct:  291 IARGITFRNTAGASNEQAVALRSGSDLSVFYQCSFEAYQDTLYVHSNRQFYRDCDVYGTVDFIFGNAAAVLQNCNIFARRPRSKTNTITAQGRSDPNQNTGIIIHNSRVTAASDLRPVLGSTKTYLGRPWRQYSRTVFMKTSLDSLIDPRGWLEWDGNFALKTLFYAEFQNTGPGASTSGRVTWPGFRVLGSASEASKFT 490          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 4.150e-79
Identity = 138/201 (68.66%), Postives = 164/201 (81.59%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IAR I+  N AGP+ HQAVALRSG+D S FY+CSF GYQDTLYVHS R+FY ECD+YGT+DFIFGNAA VLQ CN++ARKP  N+ N  TAQGR DPNQ+TGI I NC+V AA+DL PV SS KT+LGRPWK+YSRTV++ + ++SLI+PAGW+EWSGDFAL TLYY EY NTGPGS+T  RV W GY V T+ ++V QFT
Sbjct:   98 IARGISFENYAGPSKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYSECDVYGTIDFIFGNAAAVLQKCNLYARKPNENQKNIFTAQGRDDPNQNTGISILNCKVAAAADLIPVLSSFKTYLGRPWKEYSRTVFLLSQMESLIDPAGWLEWSGDFALTTLYYREYKNTGPGSNTTARVTWPGYAVTTNETEVIQFT 298          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME7_ARATH (Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1)

HSP 1 Score: 293.508 bits (750), Expect = 5.420e-79
Identity = 133/201 (66.17%), Postives = 161/201 (80.10%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +A +IT RNTAGP  HQAVALRSG+D S+FY CSFE YQDTLY HS R+FYRECD+YGTVDFIFGNAAVV QNCN++ RKP PN+ N +TAQGR+DPNQ+TG  I NC +  A DL     +VKT+LGRPWK+YSRTVY+++++D  + P GW EW+GDFAL+TLYYAEY NTGPGS+T NRV W GYHV+ S +  + FT
Sbjct:  356 VAVNITFRNTAGPEKHQAVALRSGADFSIFYSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVFQNCNLYPRKPMPNQFNAITAQGRSDPNQNTGTSIQNCTIKPADDLVSSNYTVKTYLGRPWKEYSRTVYMQSYIDGFVEPVGWREWNGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYHVINS-TDAANFT 555          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME38_ARATH (Putative pectinesterase/pectinesterase inhibitor 38 OS=Arabidopsis thaliana GN=PME38 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 8.652e-77
Identity = 133/200 (66.50%), Postives = 157/200 (78.50%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            + RDITIRNTAGP NHQAVALRS SD+SVFYRCS EGYQDTLYVHS R+F+RECDIYGTVDFIFGNAA VLQNC IFAR PPN  NT+TAQ R +PNQ+TGI+IHN  V  A  ++     VKT+LGRPW+ Y+RTV I T+LD+LI P GW++W    AL+TLYY EY N+GPGS T NRV W G+HV++   +  +FT
Sbjct:  255 VGRDITIRNTAGPENHQAVALRSNSDMSVFYRCSIEGYQDTLYVHSGRQFFRECDIYGTVDFIFGNAAAVLQNCRIFARNPPNGVNTITAQSRFNPNQTTGIVIHNSVVKGAPGVQ--LGGVKTYLGRPWRSYARTVVIGTYLDTLIEPNGWIDWDNVTALSTLYYGEYQNSGPGSGTENRVDWAGFHVISDIQEAREFT 452          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME20_ARATH (Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2)

HSP 1 Score: 286.189 bits (731), Expect = 8.652e-77
Identity = 134/201 (66.67%), Postives = 158/201 (78.61%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            I  +ITIRNTAGP   QAVALRSG DLSVFY CSFE YQDTLY HS R+FYRECD+YGTVDFIFGNAAVVLQNCN++ R+P   ++N +TAQGRTDPNQ+TG  IH C +  A DL     +VKT+LGRPWK+YSRTV ++T++D  + P+GW  WSGDFAL+TLYYAEY NTGPGS T NRV W GYHV+ + +  S FT
Sbjct:  337 IGVNITIRNTAGPTKGQAVALRSGGDLSVFYSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVLQNCNLYPRQPRKGQSNEVTAQGRTDPNQNTGTAIHGCTIRPADDLATSNYTVKTYLGRPWKEYSRTVVMQTYIDGFLEPSGWNAWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINA-TDASNFT 536          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME41_ARATH (Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 1.130e-76
Identity = 130/201 (64.68%), Postives = 162/201 (80.60%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +A ++T RNTAGP  HQAVA+RS +DLS+FY CSFE YQDTLY HS R+FYRECDIYGTVDFIFGNAAVV Q+CN++ R+P  N+ N +TAQGRTDPNQ+TGI IHNC +  A DL     +VKT+LGRPWK+YSRTV++++++D ++ P GW EW+GDFAL+TLYYAEY NTG GSST +RV W GYHV+ S +  + FT
Sbjct:  350 VAVNMTFRNTAGPEKHQAVAMRSSADLSIFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQDCNLYPRQPMQNQFNAITAQGRTDPNQNTGISIHNCTIKPADDLVSSNYTVKTYLGRPWKEYSRTVFMQSYIDEVVEPVGWREWNGDFALSTLYYAEYNNTGSGSSTTDRVVWPGYHVINS-TDANNFT 549          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 6.417e-72
Identity = 126/201 (62.69%), Postives = 157/201 (78.11%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPN-RTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            +ARDIT +NTAGP+ HQAVALR G+DLS FY C    YQDTLYVHS R+F+  C I GTVDFIFGNAA VLQNC+I ARKP + + N +TAQGRTDPNQ+TGI+I   R+ A SDLKPVQ S  T+LGRPWK+YSRTV +++ +  LI+PAGW EW G+FALNTL+Y E+ N+G G+ T+ RVKW+G+ V+TS ++   FT
Sbjct:  362 LARDITFQNTAGPSKHQAVALRVGADLSAFYNCDMLAYQDTLYVHSNRQFFVNCLIAGTVDFIFGNAAAVLQNCDIHARKPNSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLKPVQGSFPTYLGRPWKEYSRTVIMQSSITDLIHPAGWHEWDGNFALNTLFYGEHQNSGAGAGTSGRVKWKGFRVITSATEAQAFT 562          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.438e-71
Identity = 125/201 (62.19%), Postives = 156/201 (77.61%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKPPN-RTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQSSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IARDIT  N AGP  HQAVALR G+D +V YRC+  GYQDTLYVHS R+F+RECDIYGTVDFIFGNAAVVLQNC+I+ARKP + + NT+TAQ R DPNQ+TGI IH  RV AASDL+    S +T+LGRPWK +SRTVY+ +++   ++  GW+EW+  FAL+TLYY EY+N+GPGS    RV W GY V+ S ++ ++FT
Sbjct:  374 IARDITFENWAGPAKHQAVALRIGADHAVIYRCNIIGYQDTLYVHSNRQFFRECDIYGTVDFIFGNAAVVLQNCSIYARKPMDFQKNTITAQNRKDPNQNTGISIHASRVLAASDLQATNGSTQTYLGRPWKLFSRTVYMMSYIGGHVHTRGWLEWNTTFALDTLYYGEYLNSGPGSGLGQRVSWPGYRVINSTAEANRFT 574          
BLAST of FC919336 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 7.095e-71
Identity = 125/202 (61.88%), Postives = 152/202 (75.25%), Query Frame = -1
Query:    3 IARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRRFYRECDIYGTVDFIFGNAAVVLQNCNIFARKP-PNRTNTLTAQGRTDPNQSTGIIIHNCRVTAASDLKPVQ-SSVKTFLGRPWKQYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFT 602
            IARDIT  NTAGP  HQAVALRS SDLSVFYRC+  GYQDTLY H+ R+FYR+C I GTVDFIFG+A VV QNC I A+K  PN+ N++TAQGR DPN+ TGI I  C +TA SDL+    +S  T+LGRPWK YSRTV +++FL ++I P GW+EW+GDFALN+L+Y EYMN GPG+   +RVKW GY V    +Q   +T
Sbjct:  297 IARDITFENTAGPEKHQAVALRSDSDLSVFYRCNIRGYQDTLYTHTMRQFYRDCKISGTVDFIFGDATVVFQNCQILAKKGLPNQKNSITAQGRKDPNEPTGISIQFCNITADSDLEAASVNSTPTYLGRPWKLYSRTVIMQSFLSNVIRPEGWLEWNGDFALNSLFYGEYMNYGPGAGLGSRVKWPGYQVFNESTQAKNYT 498          
The following BLAST results are available for this feature:
BLAST of FC919336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME2_CITSI9.456e-11699.50Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME17_ARATH2.867e-8875.00Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME_ACTDE4.150e-7968.66Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME7_ARATH5.420e-7966.17Probable pectinesterase/pectinesterase inhibitor 7... [more]
PME38_ARATH8.652e-7766.50Putative pectinesterase/pectinesterase inhibitor 3... [more]
PME20_ARATH8.652e-7766.67Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME41_ARATH1.130e-7664.68Probable pectinesterase/pectinesterase inhibitor 4... [more]
PME1_CITSI6.417e-7262.69Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME34_ARATH2.438e-7162.19Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME_PRUPE7.095e-7161.88Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]

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Properties
Property NameValue
Genbank descriptionC16000A09SK PCR Citrus clementina cDNA clone C16000A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC919336 ID=FC919336; Name=FC919336; organism=Citrus clementina; type=EST; length=602bp
TCGGTGAACTGGCTAACCTGGGACGGACTGGTAAGAACGTGATAGCCACG
CCACTTGACTCTGTTAGCAGTTGAAGAACCCGGGCCAGTGTTCATATACT
CAGCATAATACAGTGTATTCAAAGCAAAATCACCACTCCATTCCATCCAT
CCAGCGGGGTTTATCAAGCTGTCAAGGAAGGTCTTGATATAAACGGTTCG
CGAGTACTGCTTCCAGGGCCTCCCAAGGAACGTCTTAACGGAGCTTTGAA
CAGGCTTCAAGTCGGAAGCAGCAGTGACCCTACAGTTGTGAATAATGATT
CCAGTGCTCTGGTTAGGGTCGGTTCTGCCTTGTGCGGTGAGAGTGTTGGT
CCTGTTGGGGGGTTTGCGCGCAAATATGTTGCAGTTTTGTAACACAACCG
CAGCGTTACCAAATATGAAATCCACTGTCCCATAAATGTCACACTCTCTG
TAGAATCGACGCTGTGAATGAACGTAGAGGGTGTCCTGGTATCCTTCAAA
GCTGCATCTGTAGAAAACTGAGAGATCCGACCCGGAACGCAGTGCCACCG
CCTGGTGATTGTTTGGACCCGCAGTGTTGCGGATTGTTATGTCACGAGCA
AT
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