FC920645

Overview
NameFC920645
Unique NameFC920645
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:14..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI2_BRANA (Endochitinase CH25 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.107e-55
Identity = 100/181 (55.25%), Postives = 122/181 (67.40%), Query Frame = 1
Query:  163 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            G+L  IISR  F+D+L +RND  CPARGFYTYDAFI AAK+FP FG +G+   R +EIAAFF QT HETTGGW  AP G Y+WGYCF  E +P S YC  +  +PC     YYGRGP+QL+WNYNY +C                 + DPV++ ++AIWFWMT Q PKPSCH VI  +W+P
Sbjct:   69 GDLSGIISRSQFDDMLKHRNDNACPARGFYTYDAFINAAKSFPGFGTTGDTATRKKEIAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPSSNYCSPSAEWPCASGKSYYGRGPMQLSWNYNYGQC--GRAIGSDLLNNPDLVSNDPVIAFKAAIWFWMTPQSPKPSCHAVIVGQWQP 247          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIB_ARATH (Basic endochitinase B OS=Arabidopsis thaliana GN=CHI-B PE=1 SV=3)

HSP 1 Score: 215.698 bits (548), Expect = 1.888e-55
Identity = 99/181 (54.70%), Postives = 122/181 (67.40%), Query Frame = 1
Query:  163 GELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            G+L  IIS   F+D+L +RND  CPARGFYTY+AFI AAK+FP FG +G+   R +E+AAFF QT HETTGGW  AP G Y+WGYCF  E +P S YC  +  +PC    +YYGRGP+QL+WNYNY  C                 A D V++ ++AIWFWMTAQPPKPSCH VI  +W+P
Sbjct:   84 GDLSGIISSSQFDDMLKHRNDAACPARGFYTYNAFITAAKSFPGFGTTGDTATRKKEVAAFFGQTSHETTGGWATAPDGPYSWGYCFKQEQNPASDYCEPSATWPCASGKRYYGRGPMQLSWNYNYGLC--GRAIGVDLLNNPDLVANDAVIAFKAAIWFWMTAQPPKPSCHAVIAGQWQP 262          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIT_PHAVU (Endochitinase OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 106/199 (53.27%), Postives = 129/199 (64.82%), Query Frame = 1
Query:  109 CGSGVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL--NYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            CG G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E + PS YC+    +PC    +YYGRGPIQ++WNYNY +C                 ATD V+S +SA+WFWMTAQ PKPS H+VIT  W P
Sbjct:   58 CGPG--CQSQCGGPSPAPTDLSALISRSTFDQMLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSTYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC--GRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTP 251          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 101/177 (57.06%), Postives = 124/177 (70.06%), Query Frame = 1
Query:  175 KIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            KIISR MF+ +L +RN+  CPA+GFYTYDAF+ AAK+FP+FG +G+  +R RE+AAF  QT HETTGGW  AP G YAWGYCF+ E +P S YC  +  YPC  GK YYGRGP+QL+WNYNY  C                 ATD VLS ++A+WFWMT Q PKPSCH+V+T  W+P
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPLQLSWNYNYGPC--GEALRVNLLGNPDLVATDRVLSFKTALWFWMTPQAPKPSCHDVLTGRWQP 178          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.221e-55
Identity = 103/200 (51.50%), Postives = 127/200 (63.50%), Query Frame = 1
Query:  109 CGSGV-VCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCRG--KYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            CG+    CG       +  G++G++I+R MF D+L +RN+  CP +GFYTYDAFI AAKAFP FG +G+ T R REIAAF AQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KYYGRGPIQ+++NYNY +                  ATD V+S ++A WFWMT Q PKPSCH VIT  W P
Sbjct:   44 CGNTADYCGSGCQSQCSSTGDIGQLITRSMFNDMLKHRNEGSCPGKGFYTYDAFIAAAKAFPGFGTTGDTTTRKREIAAFLAQTSHETTGGWASAPDGPYAWGYCYLREQGSPGAYCVPSAQWPCAAGRKYYGRGPIQISYNYNYGQA--GKAIGVDLVNNPDLVATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTP 241          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.207e-55
Identity = 109/192 (56.77%), Postives = 124/192 (64.58%), Query Frame = 1
Query:  130 GERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPC-RGKYY-GRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            G  D G   D G L  II +  F+ LL +RND RCPA GFYTY+AFI AAK FP FGN+G++ MR REIAAF  QT HETTGGW DAP G YAWGYC++ EI+   PYC  + NY C  GK Y GRGPIQL+WNYNY  C                  TDPV+S ++AIWFWM  Q PKPSCH VIT  W P
Sbjct:   76 GGDDGGGDGDDGYLSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNYGLC--GDDLKLPLLQEPELVETDPVISFKTAIWFWMKPQSPKPSCHAVITGNWTP 264          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI5_PHAVU (Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.372e-55
Identity = 107/204 (52.45%), Postives = 130/204 (63.73%), Query Frame = 1
Query:  109 CGS-----GVVCGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNL--NYPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            CGS     G  C  +  G      +L  +ISR  F+ +L +RND  CPA+GFYTYDAFI AAKA+P+FGN+G+   R REIAAF  QT HETTGGW  AP G YAWGYCF+ E + PS YC+    +PC    +YYGRGPIQ++WNYNY +C                 ATD V+S +SA+WFWMTAQ PKPS H+VIT  W P
Sbjct:   50 CGSTTDYCGKDCQSQCGGPSPAPTDLSALISRSTFDQVLKHRNDGACPAKGFYTYDAFIAAAKAYPSFGNTGDTATRKREIAAFLGQTSHETTGGWATAPDGPYAWGYCFVRERN-PSAYCSATPQFPCAPGQQYYGRGPIQISWNYNYGQC--GRAIGVDLLNKPDLVATDSVISFKSALWFWMTAQSPKPSSHDVITSRWTP 250          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.088e-54
Identity = 106/201 (52.74%), Postives = 129/201 (64.18%), Query Frame = 1
Query:  109 CGSGVVCGERDTGHGTD--GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            CG G  C  +  G  T   GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+S +SA+WFWMT Q PKPSCH+VI   W+P
Sbjct:   54 CGPGN-CQSQCPGGPTPPGGGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQP 251          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.561e-54
Identity = 100/182 (54.95%), Postives = 122/182 (67.03%), Query Frame = 1
Query:  160 GGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTGGWRDAPGGEYAWGYCFISEISPPSPYCNLN--YPCR--GKYYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            GG+LG IIS  MF+ +L +RND  C  +GFY+Y+AFI AA++FP FG SG+ T R REIAAFFAQT HETTGGW  AP G YAWGYC++ E   P  YC  +  +PC    KY+GRGPIQ++ NYNY  C                 ATDPV+S +SA+WFWMT Q PKPSCH+VI   W+P
Sbjct:   77 GGDLGSIISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPC--GRAIGVDLLNNPDLVATDPVISFKSALWFWMTPQSPKPSCHDVIIGRWQP 256          
BLAST of FC920645 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.353e-53
Identity = 106/195 (54.36%), Postives = 129/195 (66.15%), Query Frame = 1
Query:  127 CGERDTGHGTDGGELGKIISREMFEDLLPYRNDVRCPARGFYTYDAFIEAAKAFPAFGNSGNETMRTREIAAFFAQTGHETTG--GWRDAPGGEYAWGYCFISEISPPSPYC--NLNYPCR-GK-YYGRGPIQLTWNYNYLRCXXXXXXXXXXXXXXXXXATDPVLSXQSAIWFWMTAQPPKPSCHEVITDEWKP 693
            C  + +G G D G L  +I+RE F+ +L +RND  CPARGFYTYDAFI AAK+FPAF  +G++  R RE+AAF AQT HETTG  GW  AP G Y WGYC+  E++ P+ YC  + NYPC  GK Y+GRGP+QLTWNYNY +C                 ATDP +S +SA WFWMT Q PKPSCH+VI   W P
Sbjct:   58 CQSQCSGSGGDTGGLDSLITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWA-APDGPYTWGYCYNRELN-PADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNYGQC--GRAIGVDLLNNPDLLATDPTISFKSAFWFWMTPQSPKPSCHDVIIGAWSP 248          
The following BLAST results are available for this feature:
BLAST of FC920645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI2_BRANA1.107e-5555.25Endochitinase CH25 OS=Brassica napus PE=2 SV=1[more]
CHIB_ARATH1.888e-5554.70Basic endochitinase B OS=Arabidopsis thaliana GN=C... [more]
CHIT_PHAVU3.221e-5553.27Endochitinase OS=Phaseolus vulgaris PE=1 SV=1[more]
CHIT_CARPA3.221e-5557.06Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHIB_VITVI3.221e-5551.50Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI6_POPTR4.207e-5556.77Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI5_PHAVU9.372e-5552.45Endochitinase CH5B OS=Phaseolus vulgaris PE=3 SV=1[more]
CHI2_TOBAC2.088e-5452.74Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC3.561e-5454.95Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_THECC1.353e-5354.36Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC32011B10EF RVDevelop1 Citrus clementina cDNA clone C32011B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920645 ID=FC920645; Name=FC920645; organism=Citrus clementina; type=EST; length=693bp
AGCAGAGGATAATTTCTTCATAACTGTTGCTTTCAAATGAGGCTTATTGC
GTCCTTACTAGTTTTCTCTCTAGTTTTATCTTTCGTACTAGGAGGCTCAG
CACGGAATTGTGGAAGCGGCGTTGTGTGCGGTGAACGTGATACCGGCCAC
GGGACGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGA
AGACTTGCTTCCGTATAGAAATGATGTACGATGCCCTGCCAGAGGCTTCT
ACACTTATGATGCTTTTATAGAGGCAGCCAAAGCTTTTCCAGCCTTTGGT
AACTCTGGAAATGAAACCATGCGTACAAGAGAAATTGCTGCCTTTTTTGC
CCAAACTGGCCATGAAACTACTGGGGGATGGCGCGATGCACCTGGTGGAG
AATATGCTTGGGGATATTGCTTTATAAGCGAAATTAGCCCTCCGTCCCCC
TACTGTAATCTTAACTATCCATGTCGAGGGAAGTACTATGGCCGAGGTCC
AATTCAACTCACTTGGAATTACAATTACTTACGGTGCGGAGAAGACCTAG
GGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCTTGCTACTGATCCA
GTACTATCATTNCAGTCAGCAATCTGGTTCTGGATGACCGCACAGCCACC
AAAGCCATCATGCCACGAAGTCATTACCGACGAATGGAAACCA
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