FC920731

Overview
NameFC920731
Unique NameFC920731
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14185 contig Ccv1_Contig14185:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920731 vs. ExPASy Swiss-Prot
Match: YH75_SCHPO (Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe GN=SPBC16G5.05c PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 48/133 (36.09%), Postives = 72/133 (54.14%), Query Frame = 2
Query:  263 LQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP-PDMQCKDKFLLQGVVASPGATAK-----DITPEMFNREAGHHVEECKLRVLYVAPPRPPSPVHEGSEEGSSPRASVSDNGN 643
            + + N     V FKVKTT PK YCVRPN+G + P+ST +V V +Q+ KE P PD +C+DKFL+Q +      T+      +   EM   + G  + + K+R +Y +  +PP    +  E  S+    VS  G+
Sbjct:   23 ISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQAMKEEPAPDFKCRDKFLIQSMAIGDADTSNVENYHEFWTEM--EKQGRSIFDRKIRCVY-STKQPPQSADKQVENTSTSNPPVSVEGS 152          
BLAST of FC920731 vs. ExPASy Swiss-Prot
Match: YDFC_SCHPO (Uncharacterized protein C17C9.12 OS=Schizosaccharomyces pombe GN=SPAC17C9.12 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = 2
Query:  227 FPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAP-PDMQCKDKFLLQGVVASPGATAKDITPEMFNREAGHHVEECKLRVLYVAPP 568
            FP  L + + C L+L N     + FKVKTT PK+YCVRPN G +   S   V V +Q     P P  +C+DKFL+Q     P     DI  +++ + +  ++ E K+R +Y   P
Sbjct:   11 FPRPLTRLVKCDLELRNTAPYPIGFKVKTTAPKQYCVRPNGGRIEANSAVSVEVILQPLDHEPAPGTKCRDKFLVQSTELKPELQGMDIA-DIWTQVSKANISERKIRCVYSEGP 124          
BLAST of FC920731 vs. ExPASy Swiss-Prot
Match: VAPB_RAT (Vesicle-associated membrane protein-associated protein B OS=Rattus norvegicus GN=Vapb PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 44/136 (32.35%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  179 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNREAGHHVEECKLRVLYVAPPRPPSP 583
            M    ++L++EPQ EL+F       ++ +L+L N TD  V FKVKTT P++YCVRPN+GV+   ++ +V V +Q   +  P+ + K KF++Q + A P  +  +    ++       + + KLR ++  P     P
Sbjct:    1 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGVIDAGASLNVSVMLQ-PFDYDPNEKSKHKFMVQSMFAPPDTSDME---AVWKEAKPEDLMDSKLRCVFELPAENAKP 132          
BLAST of FC920731 vs. ExPASy Swiss-Prot
Match: VAPB_MOUSE (Vesicle-associated membrane protein-associated protein B OS=Mus musculus GN=Vapb PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 44/136 (32.35%), Postives = 75/136 (55.15%), Query Frame = 2
Query:  179 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNREAGHHVEECKLRVLYVAPPRPPSP 583
            M    ++L++EPQ EL+F       ++ +L+L N TD  V FKVKTT P++YCVRPN+GV+   ++ +V V +Q   +  P+ + K KF++Q + A P  +  +    ++       + + KLR ++  P     P
Sbjct:    1 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTVPRRYCVRPNSGVIDAGASLNVSVMLQ-PFDYDPNEKSKHKFMVQSMFAPPDTSDME---AVWKEAKPEDLMDSKLRCVFELPAENAKP 132          
BLAST of FC920731 vs. ExPASy Swiss-Prot
Match: VAPA_PONAB (Vesicle-associated membrane protein-associated protein A OS=Pongo abelii GN=VAPA PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 47/153 (30.72%), Postives = 79/153 (51.63%), Query Frame = 2
Query:  212 PQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNREAGHHVEECKLRVLYVAP----------PRPPSPVHEGSEEGSSPRA-SVSDN 637
            P +L+F       ++ +L+L N +D  V FKVKTT P++YCVRPN+G++ P ST  V V +Q   +  P+ + K KF++Q + A P  +  +    ++       + + KLR ++  P          P    P++   ++G  P+  SVS N
Sbjct:   20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNTSDME---AVWKEAKPDELMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLN 168          
BLAST of FC920731 vs. ExPASy Swiss-Prot
Match: VAPA_HUMAN (Vesicle-associated membrane protein-associated protein A OS=Homo sapiens GN=VAPA PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 47/153 (30.72%), Postives = 79/153 (51.63%), Query Frame = 2
Query:  212 PQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNREAGHHVEECKLRVLYVAP----------PRPPSPVHEGSEEGSSPRA-SVSDN 637
            P +L+F       ++ +L+L N +D  V FKVKTT P++YCVRPN+G++ P ST  V V +Q   +  P+ + K KF++Q + A P  +  +    ++       + + KLR ++  P          P    P++   ++G  P+  SVS N
Sbjct:   20 PTDLKFKGPFTDVVTTNLKLRNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSTVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNTSDME---AVWKEAKPDELMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPMPKPHSVSLN 168          
BLAST of FC920731 vs. ExPASy Swiss-Prot
Match: VP33_APLCA (Vesicle-associated membrane protein/synaptobrevin-binding protein OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12
Identity = 49/136 (36.03%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  179 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQG------VVASPGATAKDITPEMFNREAGHHVEECKLRVLYVAP 565
            M S  + L +EP  EL+F       ++  L+LSN TD  + FKVKTT PK+YCVRPN+G++ P+++  V V +Q     P +   K KF++Q       VV S     KD  PE         + + KLR ++  P
Sbjct:    1 MASHEQALILEPAGELRFKGPFTDVVTADLKLSNPTDRRICFKVKTTAPKRYCVRPNSGILEPKTSIAVAVMLQPFNYDPNEKN-KHKFMVQSMYAPDHVVESQELLWKDAPPE--------SLMDTKLRCVFEMP 127          
BLAST of FC920731 vs. ExPASy Swiss-Prot
Match: VAPA_RAT (Vesicle-associated membrane protein-associated protein A OS=Rattus norvegicus GN=Vapa PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 2
Query:  212 PQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNREAGHHVEECKLRVLYVAP----------PRPPSPVHEGSEEGSSPRA-SVSDN 637
            P +L+F       ++ +L+L N +D  V FKVKTT P++YCVRPN+GV+ P S   V V +Q   +  P+ + K KF++Q + A P  +  +    ++       + + KLR ++  P          P    P++   ++G  P+  SVS N
Sbjct:   20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGVIDPGSIVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNISDME---AVWKEAKPDELMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPLPKPHSVSLN 168          
BLAST of FC920731 vs. ExPASy Swiss-Prot
Match: VAPA_MOUSE (Vesicle-associated membrane protein-associated protein A OS=Mus musculus GN=Vapa PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 46/153 (30.07%), Postives = 78/153 (50.98%), Query Frame = 2
Query:  212 PQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPGATAKDITPEMFNREAGHHVEECKLRVLYVAP----------PRPPSPVHEGSEEGSSPRA-SVSDN 637
            P +L+F       ++ +L+L N +D  V FKVKTT P++YCVRPN+G++ P S   V V +Q   +  P+ + K KF++Q + A P  +  +    ++       + + KLR ++  P          P    P++   ++G  P+  SVS N
Sbjct:   20 PSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQ-PFDYDPNEKSKHKFMVQTIFAPPNISDME---AVWKEAKPDELMDSKLRCVFEMPNENDKLNDMEPSKAVPLNASKQDGPLPKPHSVSLN 168          
BLAST of FC920731 vs. ExPASy Swiss-Prot
Match: VAPB_PIG (Vesicle-associated membrane protein-associated protein B OS=Sus scrofa GN=VAPB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 46/141 (32.62%), Postives = 75/141 (53.19%), Query Frame = 2
Query:  179 MMSTGELLNIEPQ-ELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQSQKEAPPDMQCKDKFLLQGVVASPG-----ATAKDITPEMFNREAGHHVEECKLRVLYVAPPRPPSP 583
            M    ++L++EPQ EL+F       ++ +L+L N TD  V FKVKTT P++YCVRPN+G++   ++ +V V +Q   +  P+ + K KF++Q + A        A  K+  PE         + + KLR ++  P     P
Sbjct:    1 MAKVEQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAGASINVSVMLQ-PFDYDPNEKSKHKFMVQSMFAPADTSDMEAAWKEAKPE--------DLMDSKLRCVFELPAENDKP 132          
The following BLAST results are available for this feature:
BLAST of FC920731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YH75_SCHPO1.801e-1436.09Vesicle-associated membrane protein-associated pro... [more]
YDFC_SCHPO1.992e-1336.52Uncharacterized protein C17C9.12 OS=Schizosaccharo... [more]
VAPB_RAT1.291e-1232.35Vesicle-associated membrane protein-associated pro... [more]
VAPB_MOUSE1.686e-1232.35Vesicle-associated membrane protein-associated pro... [more]
VAPA_PONAB1.686e-1230.72Vesicle-associated membrane protein-associated pro... [more]
VAPA_HUMAN1.686e-1230.72Vesicle-associated membrane protein-associated pro... [more]
VP33_APLCA4.906e-1236.03Vesicle-associated membrane protein/synaptobrevin-... [more]
VAPA_RAT6.407e-1230.72Vesicle-associated membrane protein-associated pro... [more]
VAPA_MOUSE8.368e-1230.07Vesicle-associated membrane protein-associated pro... [more]
VAPB_PIG1.427e-1132.62Vesicle-associated membrane protein-associated pro... [more]

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Properties
Property NameValue
Genbank descriptionC32012C12EF RVDevelop1 Citrus clementina cDNA clone C32012C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920731 ID=FC920731; Name=FC920731; organism=Citrus clementina; type=EST; length=740bp
GCTCTCTCTGTCATTTAATTCGCCGTCGTTTCTTTGAATCTCTCTTTCTA
TCTTGTCTTTCGCCTGCCCACTCGTGGCTAGCTAGAATTTTCCTTTCCGC
CGGCACCGGGACTACTTTCCCTTGCCGGAAACTGCCAGTTACTTTCTATC
TCCAGCCCCAACCTAAATCGTTTGCGTCATGATGAGTACTGGCGAGCTTC
TCAACATCGAACCTCAGGAGCTTCAATTTCCTTTTGAATTGAGGAAGCAG
ATCTCGTGCTCTCTACAGTTATCAAATAAGACAGATAATTATGTGGCTTT
CAAGGTTAAAACGACAAATCCAAAGAAGTATTGTGTTAGGCCCAACACTG
GCGTGGTCTTGCCGAGGTCTACATGTGATGTTATAGTTACAATGCAATCG
CAAAAGGAGGCCCCACCAGACATGCAATGCAAAGACAAGTTCTTACTTCA
GGGTGTGGTTGCCAGTCCTGGAGCCACAGCTAAAGATATTACTCCAGAGA
TGTTCAATAGGGAGGCGGGTCATCATGTTGAAGAGTGCAAACTGAGGGTT
CTTTATGTGGCTCCACCTCGGCCTCCATCTCCAGTTCACGAAGGATCAGA
AGAAGGTTCTTCACCGAGGGCATCAGTTTCGGATAATGGGAATTTCAGTG
CTTCCGAATTTTCAGCCGCTGCTTCAAGAGCTTTGTTGAGCATATGAGCC
GCAGATAGTCACAGAGGCAAGGCTCTCATTCAAGCTAACT
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