FC921104

Overview
NameFC921104
Unique NameFC921104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length592
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.593e-50
Identity = 92/101 (91.09%), Postives = 99/101 (98.02%), Query Frame = 3
Query:  117 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLPGD 419
            HESINNRLALVMKSGKYTLGYKTVL+SLR+SKGKLII++NNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKY+RV CLSI+DPGDSDI K+LPGD
Sbjct:   11 HESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLPGD 111          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.290e-49
Identity = 91/102 (89.22%), Postives = 98/102 (96.08%), Query Frame = 3
Query:  117 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLPGDH 422
            HESIN+RLALVMKSGK+TLGYKTVL SLR++KGKLII++NNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRV CLSIID GDSDI KS+PGDH
Sbjct:   11 HESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGDH 112          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.618e-48
Identity = 89/101 (88.12%), Postives = 97/101 (96.04%), Query Frame = 3
Query:  117 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLPGD 419
            HE IN+RLALVMKSGKYTLGYK+VL+SLR SKGKLI++S NCPPLR+SEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSI+DPGDSDI KS+PGD
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIPGD 111          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 6.171e-48
Identity = 89/101 (88.12%), Postives = 98/101 (97.03%), Query Frame = 3
Query:  117 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLPGD 419
            HE IN+RLALVMKSGKYTLGYK+VL+SLR+SKGKLI++S+NCPPLR+SEIEYYAMLAKVGVHHYN NNVDLGTACGKYFRVSCLSI+DPGDSDI KSLPGD
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLPGD 111          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.375e-47
Identity = 88/101 (87.13%), Postives = 98/101 (97.03%), Query Frame = 3
Query:  117 HESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLPGD 419
            HE IN+RLALVMKSGKYTLGYK+VL+SLR+SKGKLI++S+NCPPLR+SEIEYYAMLAKVGVH YNGNNVDLGTACGKYFRVSCLSI+DPGDSDI K+LPGD
Sbjct:   11 HEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLPGD 111          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_MAIZE (60S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 7.061e-44
Identity = 82/100 (82.00%), Postives = 93/100 (93.00%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLPGD 419
            ++INN+L LVMKSGKYTLGYKTVLR+LR SK KL+I++NNCPPLRKSEIEYYAMLAKV VHH++GNNVDLGTACGKYFRV CLSIIDPGDSDI K+ PG+
Sbjct:   12 DNINNKLQLVMKSGKYTLGYKTVLRTLRNSKSKLVIIANNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKTTPGE 111          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_ORYSJ (60S ribosomal protein L30 OS=Oryza sativa subsp. japonica GN=RPL30 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.332e-42
Identity = 81/96 (84.38%), Postives = 90/96 (93.75%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKS 407
            ++INN+L LVMKSGKYTLGYKTVLR+LR SK KL+I+SNNCPPLRKSEIEYYAMLAKV VHH++GNNVDLGTACGKYFRV CLSIIDPGDSDI K+
Sbjct:   12 DNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_WHEAT (60S ribosomal protein L30 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.628e-40
Identity = 77/93 (82.80%), Postives = 88/93 (94.62%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDI 398
            E+INN+L LVMKSGKYTLGYKTVL++LR+S GKLIIL+NNCPPLRKSEIE YAMLAK+ VHH++GNNVDLGTACGKY+RV CLSI+DPGDSDI
Sbjct:   12 ENINNKLQLVMKSGKYTLGYKTVLKTLRSSLGKLIILANNCPPLRKSEIETYAMLAKISVHHFHGNNVDLGTACGKYYRVCCLSILDPGDSDI 104          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_RAT (60S ribosomal protein L30 OS=Rattus norvegicus GN=Rpl30 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.990e-38
Identity = 73/98 (74.49%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLP 413
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDI +S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
BLAST of FC921104 vs. ExPASy Swiss-Prot
Match: RL30_OPHHA (60S ribosomal protein L30 OS=Ophiophagus hannah GN=RPL30 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 1.990e-38
Identity = 73/98 (74.49%), Postives = 85/98 (86.73%), Query Frame = 3
Query:  120 ESINNRLALVMKSGKYTLGYKTVLRSLRTSKGKLIILSNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIIDPGDSDITKSLP 413
            ESIN+RL LVMKSGKY LGYK  L+ +R  K KL+IL+NNCP LRKSEIEYYAMLAK GVHHY+GNN++LGTACGKY+RV  L+IIDPGDSDI +S+P
Sbjct:   12 ESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMP 109          
The following BLAST results are available for this feature:
BLAST of FC921104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL30_LUPLU6.593e-5091.0960S ribosomal protein L30 OS=Lupinus luteus GN=RPL... [more]
RL30_EUPES7.290e-4989.2260S ribosomal protein L30 OS=Euphorbia esula GN=RP... [more]
RL302_ARATH3.618e-4888.1260S ribosomal protein L30-2 OS=Arabidopsis thalian... [more]
RL301_ARATH6.171e-4888.12Putative 60S ribosomal protein L30-1 OS=Arabidopsi... [more]
RL303_ARATH1.375e-4787.1360S ribosomal protein L30-3 OS=Arabidopsis thalian... [more]
RL30_MAIZE7.061e-4482.0060S ribosomal protein L30 OS=Zea mays GN=RPL30 PE=... [more]
RL30_ORYSJ1.332e-4284.3860S ribosomal protein L30 OS=Oryza sativa subsp. j... [more]
RL30_WHEAT1.628e-4082.8060S ribosomal protein L30 OS=Triticum aestivum PE=... [more]
RL30_RAT1.990e-3874.4960S ribosomal protein L30 OS=Rattus norvegicus GN=... [more]
RL30_OPHHA1.990e-3874.4960S ribosomal protein L30 OS=Ophiophagus hannah GN... [more]

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Properties
Property NameValue
Genbank descriptionC32101B07EF RVDevelopN Citrus clementina cDNA clone C32101B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921104 ID=FC921104; Name=FC921104; organism=Citrus clementina; type=EST; length=592bp
GGGTGCGGCGTCTCCTCTTCTAGGGCTGGTTTGTTATTTTGCCGCCGCTC
GCGAACTCTTTTTTGGGTGCAACCAAACAATCGAAAATGGTTACAAGCAA
GAAGACAAAGAAGACTCATGAGAGCATCAACAATAGGTTGGCTCTTGTGA
TGAAGAGCGGCAAATACACTCTTGGTTACAAAACTGTTCTTCGATCTCTC
AGGACCTCTAAGGGAAAGTTGATTATTTTGTCAAATAATTGCCCACCGTT
GAGAAAATCAGAGATTGAGTACTATGCTATGCTTGCTAAAGTTGGTGTAC
ACCACTATAATGGAAACAATGTCGATTTGGGAACAGCATGTGGAAAGTAC
TTCCGTGTGTCTTGCTTGAGCATTATTGATCCAGGTGATTCTGATATCAC
CAAGTCACTTCCAGGAGACCACTAAGCCTGATTCAGAGTTAAAACCTGCA
TCTTAGTGATCAGGTTGTTTAGTTGCAGAATGCTGTTTCTCAATTCAAAA
TTTCCTTTGAACATCCTTGAGATGCAGTTTCCTATATACTCCAATTTTGA
ATGTCATGCTGGATATTTTTGTATGTTTCAATTTTTGCATTT
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