FC921221

Overview
NameFC921221
Unique NameFC921221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12817 contig Ccv1_Contig12817:137..859. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921221 vs. ExPASy Swiss-Prot
Match: PP351_ARATH (Pentatricopeptide repeat-containing protein At4g35850, mitochondrial OS=Arabidopsis thaliana GN=At4g35850 PE=1 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.158e-77
Identity = 138/207 (66.67%), Postives = 170/207 (82.13%), Query Frame = 2
Query:   59 TGHHKSVGGAL-GRRFFVTSAGAEEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVNSQR 676
            +G ++S+  AL  RR+F +S   EE A+RNYAN+ SEYNT V S+T+QRR +LLRDVYDDM LDGVQPT D+FHS +VGTMKG+RL D FFFR++MKA G  PDV +YN+LIS CGKCKN  +AIR+++EMK+Y+VKPNGQT+VCLLNACA +GQLD VYAIVRDMTAAG GL++FCYAGLITAH NK PR D+ +TKI+E V   +
Sbjct:    9 SGRNRSLVRALVSRRYFASSP--EEIAKRNYANDLSEYNTAVNSVTAQRRHYLLRDVYDDMKLDGVQPTADIFHSFVVGTMKGARLSDAFFFREEMKAMGIAPDVNLYNFLISTCGKCKNGKEAIRVYDEMKRYDVKPNGQTFVCLLNACAVSGQLDLVYAIVRDMTAAGVGLNQFCYAGLITAHLNKQPRPDNLSTKILEFVEQSK 213          
BLAST of FC921221 vs. ExPASy Swiss-Prot
Match: PP132_ARATH (Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana GN=EMB2217 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 54/177 (30.51%), Postives = 82/177 (46.33%), Query Frame = 2
Query:  125 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKII 655
            ++   R    + S ++++V S+    R      VY +M   G +P+  +F SLI    K  +L       D+MK +GF P+  +Y  +I    K    + A+ +F++M+K    P   TY CLL   A +GQ+D    I   MT AG       Y  L+T   NK  R  D A KI+
Sbjct:  337 QQMKERKLRPSFSVFSSLVDSMGKAGRLDTSMKVYMEMQGFGHRPSATMFVSLIDSYAKAGKLDTALRLWDEMKKSGFRPNFGLYTMIIESHAKSGKLEVAMTVFKDMEKAGFLPTPSTYSCLLEMHAGSGQVDSAMKIYNSMTNAGLRPGLSSYISLLTLLANK--RLVDVAGKIL 511          
BLAST of FC921221 vs. ExPASy Swiss-Prot
Match: PP325_ARATH (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 42/159 (26.42%), Postives = 73/159 (45.91%), Query Frame = 2
Query:  125 EEYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 601
            +E   R    +   YNT+++    +++        D+M+  G++P    +  LI G    +++++   F D  K NG LPDV  Y+ +I  C K + +++    F+EM    V+PN   Y  L+ A   +G+L     +  DM   G   +   Y  LI
Sbjct:  542 KEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLI 700          
BLAST of FC921221 vs. ExPASy Swiss-Prot
Match: PP288_ARATH (Pentatricopeptide repeat-containing protein At3g60050 OS=Arabidopsis thaliana GN=At3g60050 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.683e-12
Identity = 42/156 (26.92%), Postives = 71/156 (45.51%), Query Frame = 2
Query:  143 NYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAH 610
            NY      YN ++ SL   +++ L+  VY  M+ DG  P    ++ L+    +  ++       D+M  +GF PD   YN L+ + GK      A+     MK+  + P+   Y  L++  + AG L+     + +M  AG   D  CY  +IT +
Sbjct:  214 NYRPFKHSYNAILNSLLGVKQYKLIEWVYKQMLEDGFSPDVLTYNILLWTNYRLGKMDRFDRLFDEMARDGFSPDSYTYNILLHILGKGNKPLAALTTLNHMKEVGIDPSVLHYTTLIDGLSRAGNLEACKYFLDEMVKAGCRPDVVCYTVMITGY 369          
BLAST of FC921221 vs. ExPASy Swiss-Prot
Match: PP275_ARATH (Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 41/165 (24.85%), Postives = 79/165 (47.88%), Query Frame = 2
Query:  128 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLI-SVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNK 619
            E  R  +  N   + +++     + +    ++V   M   G++P   +F +L+ G     ++ D +   + M+  GF P+V  Y  LI ++C   K  D+A+R+F EM++Y  + +  TY  L++     G +D  Y+++ DM   G    +  Y  ++ AH  K
Sbjct:  226 EDMREKFPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKK 390          
BLAST of FC921221 vs. ExPASy Swiss-Prot
Match: PP190_ARATH (Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.116e-12
Identity = 37/145 (25.52%), Postives = 76/145 (52.41%), Query Frame = 2
Query:  167 YNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLI 601
            YN++   +  + R+ + +  ++ M+ +GV+PTR  ++ ++ G     RL+    F + MK  G  PD A +N +I+   + K  D+A ++F EMK  ++ P+  +Y  ++    A  ++D    I  +M ++G   +   Y+ L+
Sbjct:  223 YNSLFKVILRRGRYMMAKRYFNKMVSEGVEPTRHTYNLMLWGFFLSLRLETALRFFEDMKTRGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSYTTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLL 367          
BLAST of FC921221 vs. ExPASy Swiss-Prot
Match: PP442_ARATH (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 49/184 (26.63%), Postives = 78/184 (42.39%), Query Frame = 2
Query:  128 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVNSQRA 679
            E  +RN   +   Y TVV  + S        ++  +M+  G +P   ++ +LI   ++ SR  D      +MK  G  PD+  YN LI    K K  D+A     EM +  +KPN  TY   ++    A +       V++M   G   +K    GLI  +  K         K+IE  ++ R+
Sbjct:  407 EMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKK--------GKVIEACSAYRS 582          
BLAST of FC921221 vs. ExPASy Swiss-Prot
Match: PP407_ARATH (Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 39/159 (24.53%), Postives = 70/159 (44.03%), Query Frame = 2
Query:  128 EYARRNYANNASEYNTVVTSLTSQRRFFLLRDVYDDMMLDGVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLIT 604
            E  RR Y+ +   YNT++     +  F     ++ +M+  G+ P+   + SLI    K   +     F DQM+  G  P+   Y  L+    +    ++A R+  EM      P+  TY  L+N     G+++   A++ DM   G   D   Y+ +++
Sbjct:  300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLS 458          
BLAST of FC921221 vs. ExPASy Swiss-Prot
Match: PP344_ARATH (Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.832e-11
Identity = 49/174 (28.16%), Postives = 78/174 (44.83%), Query Frame = 2
Query:  155 NASEYNTVVTSLTSQRRFFLLRDVYDDMMLD-GVQPTRDLFHSLIVGTMKGSRLQDTFFFRDQMKANGFLPDVAVYNYLISVCGKCKNSDQAIRIFEEMKKYEVKPNGQTYVCLLNACAAAGQLDPVYAIVRDMTAAGAGLDKFCYAGLITAHTNKIPRADDTATKIIELVNSQ 673
            N   +N V++ L          D+Y D+M D    PT   +  LI G  K  RL +     + M   G  P+ A+YN LI+  GK   +D A  +F+ M K  V+P+ +TY  L++     G++D      +++  +G   D  CY  LI     K  R ++      E+  S+
Sbjct:  854 NTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCY-NLIINGLGKSHRLEEALVLFNEMKTSR 1026          
The following BLAST results are available for this feature:
BLAST of FC921221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PP351_ARATH4.158e-7766.67Pentatricopeptide repeat-containing protein At4g35... [more]
PP132_ARATH1.720e-1430.51Pentatricopeptide repeat-containing protein At1g79... [more]
PP325_ARATH1.232e-1226.42Pentatricopeptide repeat-containing protein At4g19... [more]
PP288_ARATH4.683e-1226.92Pentatricopeptide repeat-containing protein At3g60... [more]
PP275_ARATH6.116e-1224.85Pentatricopeptide repeat-containing protein At3g49... [more]
PP190_ARATH6.116e-1225.52Pentatricopeptide repeat-containing protein At2g37... [more]
PP442_ARATH3.964e-1126.63Pentatricopeptide repeat-containing protein At5g61... [more]
PP407_ARATH6.762e-1124.53Pentatricopeptide repeat-containing protein At5g39... [more]
PP344_ARATH8.832e-1128.16Pentatricopeptide repeat-containing protein At4g31... [more]
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Properties
Property NameValue
Genbank descriptionC32102E11EF RVDevelopN Citrus clementina cDNA clone C32102E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921221 ID=FC921221; Name=FC921221; organism=Citrus clementina; type=EST; length=722bp
GAATTTTTGAAGTCTCTTTTTTATCTAATGCATTAGTCGCTCACTTTTCG
TTTTCCCAACAGGTCACCACAAGTCCGTGGGCGGAGCCCTGGGCCGCCGC
TTCTTCGTGACGTCGGCGGGGGCGGAGGAATACGCCAGGCGAAACTACGC
CAACAACGCCTCCGAATACAACACCGTCGTTACGTCTCTCACTTCTCAGA
GACGGTTCTTCCTTTTGAGGGACGTCTACGATGACATGATGCTCGACGGC
GTGCAGCCCACGCGCGACTTGTTCCACTCGCTGATCGTTGGGACCATGAA
AGGCAGTCGCTTGCAGGACACTTTTTTCTTCAGAGATCAAATGAAAGCCA
ACGGTTTTCTCCCCGACGTTGCTGTGTACAACTATTTGATCTCAGTATGT
GGGAAATGCAAGAATTCTGATCAGGCGATTCGGATATTTGAAGAAATGAA
GAAATACGAAGTGAAGCCAAATGGTCAAACCTATGTCTGTCTACTTAATG
CATGTGCAGCAGCAGGCCAATTAGATCCAGTGTATGCTATTGTCCGTGAT
ATGACTGCAGCTGGTGCTGGTCTGGACAAGTTCTGCTATGCTGGGCTCAT
AACCGCACATACAAACAAGATCCCTAGAGCCGATGATACGGCCACCAAAA
TTATTGAGCTTGTAAACAGTCAAAGGGCTGGTCTTCTGTTGAACATCANG
AAACATGCCGAAATGAATGATG
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