FC921277

Overview
NameFC921277
Unique NameFC921277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921277_ssr75 microsatellite FC921277_ssr75:75..104. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL13_ARATH (Squamosa promoter-binding-like protein 13 OS=Arabidopsis thaliana GN=SPL13 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 2
Query:  527 KRARVPGNGT-QIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            KR R  G GT Q+P CLVDGC +D   CR+YH+RHKVC++HSKTP VTI+G +QRFC
Sbjct:   86 KRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFC 142          
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL18_ORYSJ (Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica GN=SPL18 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16
Identity = 37/50 (74.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:  545 GNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            G G Q PSC VDGC ADL K RDYHRRHKVCE HSKTP V + GRE RFC
Sbjct:  107 GGGGQCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFC 156          
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL16_ORYSJ (Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica GN=SPL16 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 35/46 (76.09%), Postives = 36/46 (78.26%), Query Frame = 2
Query:  557 QIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            Q PSC VDGC  DL KCRDYHRRHKVCE HSKTP V + GRE RFC
Sbjct:  114 QCPSCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFC 159          
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL2_ORYSJ (Squamosa promoter-binding-like protein 2 OS=Oryza sativa subsp. japonica GN=SPL2 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  527 KRARVPGNGTQ--IPSCLVDGCTADLGKC-RDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            KRAR  G G Q  +P+C V+GC ADL KC RDYHRRHKVCE HSKT  VT+ G++QRFC
Sbjct:   77 KRARA-GQGQQAAVPACSVEGCAADLSKCVRDYHRRHKVCEAHSKTAVVTVAGQQQRFC 134          
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL19_ORYSJ (Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japonica GN=SPL19 PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 2
Query:  545 GNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            G G    +C VDGC +DL +CRDYHRRHKVCE H+KTP V + G+EQRFC
Sbjct:   85 GGGGGAEACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFC 134          
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL10_ARATH (Squamosa promoter-binding-like protein 10 OS=Arabidopsis thaliana GN=SPL10 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 2
Query:  527 KRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            K+ +  G   Q+P C +DGC  DL   +DYHR+H+VCE HSK P+V + G E+RFC
Sbjct:  162 KKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFC 217          
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL12_ORYSJ (Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. japonica GN=SPL12 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 2
Query:  527 KRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            K+ +V    TQ   C V+GC  DL   R+YHR+HKVCE HSK P+V + G E+RFC
Sbjct:  166 KKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFC 221          
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL12_ORYSI (Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 2
Query:  527 KRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            K+ +V    TQ   C V+GC  DL   R+YHR+HKVCE HSK P+V + G E+RFC
Sbjct:  166 KKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFC 221          
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL6_ORYSJ (Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 2
Query:  527 KRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            K+ RV G     P+C V+GCTADL   RDYHRRHKVCE+H+K     +    QRFC
Sbjct:  138 KKIRVQGGSPSGPACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFC 193          
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL11_ARATH (Squamosa promoter-binding-like protein 11 OS=Arabidopsis thaliana GN=SPL11 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 2
Query:  530 RARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694
            ++++ G    +P C +DGC  DL   + YHR+HKVCE HSK P+V++ G E+RFC
Sbjct:  162 KSKLCGQSMPVPRCQIDGCELDLSSAKGYHRKHKVCEKHSKCPKVSVSGLERRFC 216          
The following BLAST results are available for this feature:
BLAST of FC921277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
SPL13_ARATH6.566e-1664.91Squamosa promoter-binding-like protein 13 OS=Arabi... [more]
SPL18_ORYSJ8.575e-1674.00Squamosa promoter-binding-like protein 18 OS=Oryza... [more]
SPL16_ORYSJ1.120e-1576.09Squamosa promoter-binding-like protein 16 OS=Oryza... [more]
SPL2_ORYSJ2.112e-1466.10Squamosa promoter-binding-like protein 2 OS=Oryza ... [more]
SPL19_ORYSJ3.603e-1464.00Putative squamosa promoter-binding-like protein 19... [more]
SPL10_ARATH1.514e-1250.00Squamosa promoter-binding-like protein 10 OS=Arabi... [more]
SPL12_ORYSJ1.281e-1151.79Squamosa promoter-binding-like protein 12 OS=Oryza... [more]
SPL12_ORYSI1.281e-1151.79Squamosa promoter-binding-like protein 12 OS=Oryza... [more]
SPL6_ORYSJ1.674e-1153.57Squamosa promoter-binding-like protein 6 OS=Oryza ... [more]
SPL11_ARATH2.186e-1147.27Squamosa promoter-binding-like protein 11 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC32103B07EF RVDevelopN Citrus clementina cDNA clone C32103B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921277 ID=FC921277; Name=FC921277; organism=Citrus clementina; type=EST; length=696bp
GGAGAGAAGACTCGCAATGACTATTTTCTTTACCATTCATGGTTACCTAA
TTACCTTCTAGCTTTTACGTGCGTTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCAGACAGCGTTTGTATCTGAATACATTATCCAAAAATCTCTTGCAGT
CTTTGCTTCTTGTTCTGCTACTGAGGAAGCACTAGCTGCAGCAAGTAGTT
TAGAGCTAGCAAAAGCTTTTTGATTGGACTTTTTTCTTGCTATTGGGAAT
AGAGGATTCTCTTGTGAATTGCCTCTTATGTGGTTGATTTGTGGGATTCT
CAGGAGTTGAGCGTGAGGAGATAAAAAAGAAGTACAGGAAAATGTTCCAT
AGGACAATCTCTTGGAAGATGCTGTTCTCCTAATTGCTTTAGTTGCTGGG
TCCAGTAGCGATTGCTTTGTGGACTTAAAGCTCGGAATAGTTAGGTTGAC
TTGGAGGACAAGTTAGAAAATAGAACTTGAGTATTCTGAGGAGTCTTTGA
TGGAATCATCACCATCTGGTTCTTCAAAGAGAGCCAGAGTGCCTGGCAAT
GGCACCCAAATTCCTTCTTGCTTGGTTGATGGATGCACAGCTGACCTTGG
TAAATGCCGAGACTATCATAGACGCCATAAAGTTTGTGAGCTTCATTCTA
AGACCCCCCAAGTAACTATTCACGGTCGGGAACAGCGATTTTGCCA
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