FC921277
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL13_ARATH (Squamosa promoter-binding-like protein 13 OS=Arabidopsis thaliana GN=SPL13 PE=2 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16 Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 2 Query: 527 KRARVPGNGT-QIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694 KR R G GT Q+P CLVDGC +D CR+YH+RHKVC++HSKTP VTI+G +QRFC Sbjct: 86 KRTRGNGVGTNQMPICLVDGCDSDFSNCREYHKRHKVCDVHSKTPVVTINGHKQRFC 142
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL18_ORYSJ (Squamosa promoter-binding-like protein 18 OS=Oryza sativa subsp. japonica GN=SPL18 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.575e-16 Identity = 37/50 (74.00%), Postives = 38/50 (76.00%), Query Frame = 2 Query: 545 GNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694 G G Q PSC VDGC ADL K RDYHRRHKVCE HSKTP V + GRE RFC Sbjct: 107 GGGGQCPSCAVDGCKADLSKHRDYHRRHKVCEPHSKTPVVVVSGREMRFC 156
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL16_ORYSJ (Squamosa promoter-binding-like protein 16 OS=Oryza sativa subsp. japonica GN=SPL16 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15 Identity = 35/46 (76.09%), Postives = 36/46 (78.26%), Query Frame = 2 Query: 557 QIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694 Q PSC VDGC DL KCRDYHRRHKVCE HSKTP V + GRE RFC Sbjct: 114 QCPSCAVDGCKEDLSKCRDYHRRHKVCEAHSKTPLVVVSGREMRFC 159
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL2_ORYSJ (Squamosa promoter-binding-like protein 2 OS=Oryza sativa subsp. japonica GN=SPL2 PE=2 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14 Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = 2 Query: 527 KRARVPGNGTQ--IPSCLVDGCTADLGKC-RDYHRRHKVCELHSKTPQVTIHGREQRFC 694 KRAR G G Q +P+C V+GC ADL KC RDYHRRHKVCE HSKT VT+ G++QRFC Sbjct: 77 KRARA-GQGQQAAVPACSVEGCAADLSKCVRDYHRRHKVCEAHSKTAVVTVAGQQQRFC 134
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL19_ORYSJ (Putative squamosa promoter-binding-like protein 19 OS=Oryza sativa subsp. japonica GN=SPL19 PE=3 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14 Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 2 Query: 545 GNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694 G G +C VDGC +DL +CRDYHRRHKVCE H+KTP V + G+EQRFC Sbjct: 85 GGGGGAEACSVDGCRSDLSRCRDYHRRHKVCEAHAKTPVVVVAGQEQRFC 134
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL10_ARATH (Squamosa promoter-binding-like protein 10 OS=Arabidopsis thaliana GN=SPL10 PE=2 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.514e-12 Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 2 Query: 527 KRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694 K+ + G Q+P C +DGC DL +DYHR+H+VCE HSK P+V + G E+RFC Sbjct: 162 KKTKSCGQSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFC 217
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL12_ORYSJ (Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. japonica GN=SPL12 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11 Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 2 Query: 527 KRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694 K+ +V TQ C V+GC DL R+YHR+HKVCE HSK P+V + G E+RFC Sbjct: 166 KKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFC 221
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL12_ORYSI (Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11 Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 2 Query: 527 KRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694 K+ +V TQ C V+GC DL R+YHR+HKVCE HSK P+V + G E+RFC Sbjct: 166 KKMKVSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFC 221
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL6_ORYSJ (Squamosa promoter-binding-like protein 6 OS=Oryza sativa subsp. japonica GN=SPL6 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11 Identity = 30/56 (53.57%), Postives = 36/56 (64.29%), Query Frame = 2 Query: 527 KRARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694 K+ RV G P+C V+GCTADL RDYHRRHKVCE+H+K + QRFC Sbjct: 138 KKIRVQGGSPSGPACQVEGCTADLTGVRDYHRRHKVCEMHAKATTAVVGNTVQRFC 193
BLAST of FC921277 vs. ExPASy Swiss-Prot
Match: SPL11_ARATH (Squamosa promoter-binding-like protein 11 OS=Arabidopsis thaliana GN=SPL11 PE=2 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 2.186e-11 Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 2 Query: 530 RARVPGNGTQIPSCLVDGCTADLGKCRDYHRRHKVCELHSKTPQVTIHGREQRFC 694 ++++ G +P C +DGC DL + YHR+HKVCE HSK P+V++ G E+RFC Sbjct: 162 KSKLCGQSMPVPRCQIDGCELDLSSAKGYHRKHKVCEKHSKCPKVSVSGLERRFC 216 The following BLAST results are available for this feature:
BLAST of FC921277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921277 ID=FC921277; Name=FC921277; organism=Citrus clementina; type=EST; length=696bpback to top |